CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = A626A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S626A626AsyngcAgcG4662690.57725323438-23440
S626A626AsyngcAgcT4661630.34978523438-23440
S626A626AsyngcAgcC466340.072961423438-23440

Details of the mutation A626A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S626A626AgcAgcG269466All0.000051
S626A626AgcAgcT163466All0.000031
S626A626AgcAgcC34466All0.000007
S626A626AgcAgcG127148AY.40.000198
S626A626AgcAgcT21148AY.40.000033
S626A626AgcAgcT4242B.1.1.5240.875
S626A626AgcAgcT2539B.1.1.70.000022
S626A626AgcAgcG1439B.1.1.70.000013
S626A626AgcAgcG2737B.10.000247
S626A626AgcAgcC837B.10.000073
S626A626AgcAgcT237B.10.000018
S626A626AgcAgcG2127AY.250.000126
S626A626AgcAgcT627AY.250.000036
S626A626AgcAgcG1421B.1.617.20.000053
S626A626AgcAgcT721B.1.617.20.000026
S626A626AgcAgcG1919R.10.00171
S626A626AgcAgcG1112AY.1030.000068
S626A626AgcAgcC112AY.1030.000006
S626A626AgcAgcT712AY.440.000043
S626A626AgcAgcG412AY.440.000024
S626A626AgcAgcC112AY.440.000006
S626A626AgcAgcT911B.1.20.000079
S626A626AgcAgcG211B.1.20.000018
S626A626AgcAgcT99AY.10.003562
S626A626AgcAgcG59AY.430.000022
S626A626AgcAgcT29AY.430.000009
S626A626AgcAgcC29AY.430.000009
S626A626AgcAgcG67B.1.2210.000426
S626A626AgcAgcC17B.1.2210.000071
S626A626AgcAgcC55AY.500.003997
S626A626AgcAgcC55B.1.1770.000066
S626A626AgcAgcG55B.1.177.160.003322
S626A626AgcAgcT55B.1.5260.000118
S626A626AgcAgcT24B.1.10.000036
S626A626AgcAgcC24B.1.10.000036
S626A626AgcAgcT44B.1.2340.000528
S626A626AgcAgcG44P.10.000063
S626A626AgcAgcC22B.1.1.1610.007067
S626A626AgcAgcC22B.1.1600.000062
S626A626AgcAgcT22B.1.177.810.000379
S626A626AgcAgcT22B.1.6200.001892
S626A626AgcAgcT22B.1.621.10.001012
S626A626AgcAgcT110.055556
S626A626AgcAgcG11AY.1020.000027
S626A626AgcAgcT11AY.1170.000085
S626A626AgcAgcT11AY.1200.000037
S626A626AgcAgcG11AY.130.000161
S626A626AgcAgcG11AY.200.000039
S626A626AgcAgcT11AY.230.00007
S626A626AgcAgcT11AY.3.10.000085
S626A626AgcAgcG11AY.470.000031
S626A626AgcAgcT11AY.670.000464
S626A626AgcAgcT11AY.7.10.000113
S626A626AgcAgcT11B.1.1.2940.001266
S626A626AgcAgcT11B.1.1.3180.000302
S626A626AgcAgcT11B.1.1.3970.002252
S626A626AgcAgcC11B.1.1.4450.037037
S626A626AgcAgcT11B.1.1.5280.004808
S626A626AgcAgcG11B.1.1.880.071429
S626A626AgcAgcC11B.1.177.440.000519
S626A626AgcAgcC11B.1.220.001318
S626A626AgcAgcT11B.1.2360.002053
S626A626AgcAgcG11B.1.3510.00003
S626A626AgcAgcT11B.1.3780.006849
S626A626AgcAgcT11B.1.4270.00005
S626A626AgcAgcG11B.1.4290.000024
S626A626AgcAgcT11B.1.466.20.000391
S626A626AgcAgcG11B.1.5960.000087
S626A626AgcAgcG11B.1.6250.002353
S626A626AgcAgcC11B.1.6270.00202
S626A626AgcAgcG11C.370.000116
S626A626AgcAgcT11P.20.000187
S626A626AgcAgcC11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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