CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = A522V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S522A522VnonsyngCagTa578157640.99705923126-23128
S522A522VnonsyngCAgTT578190.0015568223126-23128
S522A522VnonsyngCAgTG578180.0013838423126-23128

Details of the mutation A522V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S522A522VgCagTa57645781All0.001102
S522A522VgCAgTT95781All0.000002
S522A522VgCAgTG85781All0.000002
S522A522VgCagTa28832884AY.250.017341
S522A522VgCAgTT12884AY.250.000006
S522A522VgCagTa431431AY.40.000671
S522A522VgCagTa281281B.1.1.70.000252
S522A522VgCagTa223227B.1.617.20.00084
S522A522VgCAgTG3227B.1.617.20.000011
S522A522VgCAgTT1227B.1.617.20.000004
S522A522VgCagTa187187AY.1030.001161
S522A522VgCagTa178179AY.430.000789
S522A522VgCAgTG1179AY.430.000004
S522A522VgCagTa100101B.1.20.000881
S522A522VgCAgTT1101B.1.20.000009
S522A522VgCagTa8081AY.440.000487
S522A522VgCAgTT181AY.440.000006
S522A522VgCagTa6162B.10.000559
S522A522VgCAgTT162B.10.000009
S522A522VgCagTa5959B.1.36.230.967213
S522A522VgCagTa5757AY.260.001614
S522A522VgCagTa5657B.1.4290.001318
S522A522VgCAgTT157B.1.4290.000024
S522A522VgCagTa4242B.1.1770.000553
S522A522VgCagTa4040AY.39.10.001585
S522A522VgCagTa3737B.1.4270.001868
S522A522VgCagTa2929B.1.428.11
S522A522VgCagTa2929P.10.000457
S522A522VgCagTa2828AY.390.000692
S522A522VgCagTa2727B.1.3510.000803
S522A522VgCagTa2525AY.30.000249
S522A522VgCagTa2525B.1.2580.001664
S522A522VgCagTa2525B.1.3110.006864
S522A522VgCagTa2424B.1.10.000435
S522A522VgCagTa2323AY.98.10.001114
S522A522VgCagTa2222B.1.1.2140.00122
S522A522VgCagTa2121B.1.1.5190.000834
S522A522VgCagTa1920AY.1000.000874
S522A522VgCAgTT120AY.1000.000046
S522A522VgCagTa2020AY.50.000413
S522A522VgCagTa1919B.1.5260.000447
S522A522VgCagTa1818AY.1020.000477
S522A522VgCagTa1818AY.1180.001128
S522A522VgCagTa1717AY.3.10.001449
S522A522VgCagTa1617AY.420.000644
S522A522VgCAgTG117AY.420.00004
S522A522VgCagTa1616AY.470.000498
S522A522VgCagTa1616B.1.2210.001137
S522A522VgCagTa1515AY.1130.002136
S522A522VgCagTa1515AY.140.00132
S522A522VgCagTa1515AY.460.001561
S522A522VgCagTa1515B.580.153061
S522A522VgCagTa1414B.1.4280.014286
S522A522VgCagTa1313AY.1200.000483
S522A522VgCagTa1313AY.270.000841
S522A522VgCagTa1111AY.1190.000388
S522A522VgCagTa1111AY.200.000428
S522A522VgCagTa1010AY.1170.000845
S522A522VgCagTa1010B.1.1.2890.020833
S522A522VgCagTa99AY.290.000142
S522A522VgCagTa99AY.400.008679
S522A522VgCagTa99B.1.1.2220.001836
S522A522VgCagTa99B.1.177.40.0019
S522A522VgCagTa99B.1.2430.000626
S522A522VgCagTa99C.360.008197
S522A522VgCagTa88AY.60.000329
S522A522VgCagTa88AY.750.000448
S522A522VgCagTa88AY.850.003417
S522A522VgCagTa88B0.001022
S522A522VgCagTa88B.1.177.730.00453
S522A522VgCagTa88B.1.360.001167
S522A522VgCagTa88B.1.5960.000697
S522A522VgCagTa88P.1.140.000382
S522A522VgCagTa77AY.4.20.000152
S522A522VgCagTa77AY.5.40.001937
S522A522VgCagTa77AY.820.009498
S522A522VgCagTa77B.1.177.80.005267
S522A522VgCagTa66AY.230.000418
S522A522VgCagTa66AY.330.000401
S522A522VgCagTa66B.1.2340.000792
S522A522VgCagTa66B.1.3890.006012
S522A522VgCagTa66B.1.5670.02
S522A522VgCagTa66C.370.000696
S522A522VgCagTa66P.1.170.000971
S522A522VgCagTa55B.1.177.790.01171
S522A522VgCagTa55P.20.000933
S522A522VgCagTa55Q.30.000725
S522A522VgCagTa44AY.1160.001147
S522A522VgCagTa44AY.4.50.00043
S522A522VgCagTa44AY.46.30.003735
S522A522VgCagTa34AY.46.60.000217
S522A522VgCAgTG14AY.46.60.000072
S522A522VgCagTa44AY.600.003752
S522A522VgCagTa44AY.610.000419
S522A522VgCagTa34AY.9.20.00011
S522A522VgCAgTG14AY.9.20.000037
S522A522VgCagTa44B.1.1.250.002274
S522A522VgCagTa44B.1.1.2840.00043
S522A522VgCagTa44B.1.1.2940.005063
S522A522VgCagTa44B.1.1.5230.00625
S522A522VgCagTa44B.1.1600.000125
S522A522VgCagTa44B.1.6370.000292
S522A522VgCagTa44C.36.30.002269
S522A522VgCagTa44P.1.130.003594
S522A522VgCagTa23AY.1100.000225
S522A522VgCAgTG13AY.1100.000113
S522A522VgCagTa33AY.360.000445
S522A522VgCagTa33AY.590.001589
S522A522VgCagTa33AY.650.001599
S522A522VgCagTa33AY.75.10.000541
S522A522VgCagTa33AY.90.000203
S522A522VgCagTa33AY.980.000237
S522A522VgCagTa33B.1.1.1130.020979
S522A522VgCagTa33B.1.1.4320.003797
S522A522VgCagTa33B.1.1.700.001023
S522A522VgCagTa33B.1.177.500.014085
S522A522VgCagTa33B.1.177.720.010169
S522A522VgCagTa33B.1.177.810.000568
S522A522VgCagTa33B.1.220.003953
S522A522VgCagTa33B.1.258.170.000312
S522A522VgCagTa33B.1.438.10.000322
S522A522VgCagTa33B.1.617.10.000387
S522A522VgCagTa33B.1.6210.000266
S522A522VgCagTa33R.10.00027
S522A522VgCagTa22A0.000774
S522A522VgCagTa22A.10.000564
S522A522VgCagTa22AY.1060.00067
S522A522VgCagTa22AY.120.10.000642
S522A522VgCagTa22AY.160.000759
S522A522VgCagTa22AY.350.000466
S522A522VgCagTa22AY.4.30.001684
S522A522VgCagTa22AY.450.000243
S522A522VgCagTa22AY.46.40.000329
S522A522VgCagTa22AY.520.001629
S522A522VgCAgTT12AY.540.000095
S522A522VgCagTa12AY.540.000095
S522A522VgCagTa22AY.910.001461
S522A522VgCagTa22AY.920.000575
S522A522VgCagTa22AY.99.20.000184
S522A522VgCagTa22B.1.1.2690.002706
S522A522VgCagTa22B.1.1100.00905
S522A522VgCagTa22B.1.177.120.000303
S522A522VgCagTa22B.1.177.870.001456
S522A522VgCagTa22B.1.2320.001075
S522A522VgCagTa22B.1.2650.002541
S522A522VgCagTa22B.1.36.380.003284
S522A522VgCagTa22B.1.3960.001411
S522A522VgCagTa22B.1.5170.000854
S522A522VgCagTa22B.1.5610.000794
S522A522VgCagTa22B.1.6090.000959
S522A522VgCagTa22B.400.000729
S522A522VgCagTa22D.20.00015
S522A522VgCagTa22P.1.70.000639
S522A522VgCagTa22Q.80.00033
S522A522VgCagTa110.055556
S522A522VgCagTa11A.2.50.000499
S522A522VgCagTa11AE.80.000489
S522A522VgCagTa11AU.10.001266
S522A522VgCagTa11AY.1110.000183
S522A522VgCagTa11AY.1210.000135
S522A522VgCagTa11AY.16.10.00047
S522A522VgCagTa11AY.300.000396
S522A522VgCagTa11AY.320.000532
S522A522VgCagTa11AY.340.000097
S522A522VgCagTa11AY.380.000499
S522A522VgCagTa11AY.4.40.000409
S522A522VgCagTa11AY.46.20.000635
S522A522VgCagTa11AY.480.000465
S522A522VgCagTa11AY.5.30.000337
S522A522VgCagTa11AY.550.000917
S522A522VgCagTa11AY.620.000436
S522A522VgCagTa11AY.640.000595
S522A522VgCagTa11AY.660.00107
S522A522VgCagTa11AY.70.000196
S522A522VgCagTa11AY.720.001361
S522A522VgCagTa11AY.730.000665
S522A522VgCagTa11AY.740.000116
S522A522VgCagTa11AY.91.10.004065
S522A522VgCagTa11AY.950.000761
S522A522VgCagTa11B.1.1.10.000327
S522A522VgCagTa11B.1.1.100.001115
S522A522VgCagTa11B.1.1.1410.002012
S522A522VgCagTa11B.1.1.1530.001095
S522A522VgCagTa11B.1.1.1700.001247
S522A522VgCagTa11B.1.1.2160.00089
S522A522VgCagTa11B.1.1.2200.001859
S522A522VgCagTa11B.1.1.2530.002506
S522A522VgCagTa11B.1.1.2630.001558
S522A522VgCagTa11B.1.1.2770.000759
S522A522VgCagTa11B.1.1.2880.001916
S522A522VgCagTa11B.1.1.3010.001179
S522A522VgCagTa11B.1.1.3120.001912
S522A522VgCagTa11B.1.1.3540.004386
S522A522VgCagTa11B.1.1.3690.000446
S522A522VgCagTa11B.1.1.3820.035714
S522A522VgCagTa11B.1.1.3980.003226
S522A522VgCagTa11B.1.1.4330.001425
S522A522VgCagTa11B.1.1.5180.006329
S522A522VgCagTa11B.1.1.5250.005464
S522A522VgCagTa11B.1.1.630.000386
S522A522VgCagTa11B.1.1.670.004566
S522A522VgCagTa11B.1.1190.010526
S522A522VgCagTa11B.1.160.250.011111
S522A522VgCagTa11B.1.1640.014925
S522A522VgCagTa11B.1.177.110.001698
S522A522VgCagTa11B.1.177.460.000918
S522A522VgCagTa11B.1.177.480.003125
S522A522VgCagTa11B.1.177.510.004566
S522A522VgCagTa11B.1.177.580.001332
S522A522VgCagTa11B.1.177.60.000977
S522A522VgCagTa11B.1.177.620.001192
S522A522VgCagTa11B.1.177.70.000165
S522A522VgCagTa11B.1.1950.005025
S522A522VgCagTa11B.1.2100.002132
S522A522VgCagTa11B.1.2220.001692
S522A522VgCAgTT11B.1.2390.001221
S522A522VgCagTa11B.1.258.40.003448
S522A522VgCagTa11B.1.3250.006897
S522A522VgCagTa11B.1.3400.004292
S522A522VgCagTa11B.1.3460.001311
S522A522VgCagTa11B.1.3490.000715
S522A522VgCagTa11B.1.351.20.000303
S522A522VgCagTa11B.1.36.170.000494
S522A522VgCagTa11B.1.3690.000285
S522A522VgCagTa11B.1.3980.002976
S522A522VgCagTa11B.1.4390.005917
S522A522VgCagTa11B.1.4530.003236
S522A522VgCagTa11B.1.4620.007246
S522A522VgCagTa11B.1.466.20.000391
S522A522VgCagTa11B.1.4690.00361
S522A522VgCagTa11B.1.5050.004386
S522A522VgCagTa11B.1.5250.000113
S522A522VgCagTa11B.1.5330.009615
S522A522VgCagTa11B.1.5360.02381
S522A522VgCagTa11B.1.5730.006098
S522A522VgCagTa11B.1.5760.000907
S522A522VgCagTa11B.1.6060.006024
S522A522VgCagTa11B.1.621.10.000506
S522A522VgCagTa11B.1.6230.000536
S522A522VgCagTa11B.1.6280.000352
S522A522VgCagTa11B.1.6300.005236
S522A522VgCagTa11B.310.003731
S522A522VgCagTa11B.60.00091
S522A522VgCagTa11C.2.10.006667
S522A522VgCagTa11C.390.018868
S522A522VgCagTa11N.40.004255
S522A522VgCagTa11P.1.10.10.00813
S522A522VgCagTa11P.1.120.000484
S522A522VgCagTa11P.1.150.000232
S522A522VgCagTa11P.1.160.000374
S522A522VgCagTa11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.