CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : Mut = A475A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	475	A475A		syn	gcC	gcT	12870	12516	0.972494	22985-22987
S	475	A475A		syn	gcC	gcA	12870	344	0.0267288	22985-22987
S	475	A475A		syn	gcC	gcG	12870	10	0.000777001	22985-22987

Details of the mutation A475A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	475	A475A	gcC	gcT	12516	12870	All	0.002394
S	475	A475A	gcC	gcA	344	12870	All	0.000066
S	475	A475A	gcC	gcG	10	12870	All	0.000002
S	475	A475A	gcC	gcT	3151	3177	B.1.1.7	0.002821
S	475	A475A	gcC	gcA	22	3177	B.1.1.7	0.00002
S	475	A475A	gcC	gcG	4	3177	B.1.1.7	0.000004
S	475	A475A	gcC	gcT	2151	2151	AY.94	0.952191
S	475	A475A	gcC	gcT	1523	1523	B.1.351	0.045273
S	475	A475A	gcC	gcT	874	874	B.1.1.416	0.79095
S	475	A475A	gcC	gcT	539	539	B.1.619	0.469512
S	475	A475A	gcC	gcT	496	496	B.1.177.21	0.037929
S	475	A475A	gcC	gcT	266	419	AY.4	0.000414
S	475	A475A	gcC	gcA	152	419	AY.4	0.000237
S	475	A475A	gcC	gcG	1	419	AY.4	0.000002
S	475	A475A	gcC	gcT	310	315	AY.44	0.001887
S	475	A475A	gcC	gcA	5	315	AY.44	0.00003
S	475	A475A	gcC	gcT	255	265	B.1	0.002336
S	475	A475A	gcC	gcA	8	265	B.1	0.000073
S	475	A475A	gcC	gcG	2	265	B.1	0.000018
S	475	A475A	gcC	gcT	206	219	B.1.2	0.001814
S	475	A475A	gcC	gcA	13	219	B.1.2	0.000114
S	475	A475A	gcC	gcT	211	213	B.1.177	0.002778
S	475	A475A	gcC	gcA	2	213	B.1.177	0.000026
S	475	A475A	gcC	gcT	190	198	P.1	0.002993
S	475	A475A	gcC	gcA	8	198	P.1	0.000126
S	475	A475A	gcC	gcT	163	164	B.1.1	0.002957
S	475	A475A	gcC	gcA	1	164	B.1.1	0.000018
S	475	A475A	gcC	gcT	146	158	B.1.617.2	0.00055
S	475	A475A	gcC	gcA	12	158	B.1.617.2	0.000045
S	475	A475A	gcC	gcT	121	122	AY.75	0.006779
S	475	A475A	gcC	gcA	1	122	AY.75	0.000056
S	475	A475A	gcC	gcT	118	119	AY.9.2	0.004334
S	475	A475A	gcC	gcA	1	119	AY.9.2	0.000037
S	475	A475A	gcC	gcT	96	96	B.1.399	0.185687
S	475	A475A	gcC	gcT	71	79	AY.25	0.000427
S	475	A475A	gcC	gcA	8	79	AY.25	0.000048
S	475	A475A	gcC	gcT	67	67	B.1.1.214	0.003716
S	475	A475A	gcC	gcT	58	58	B.1.1.222	0.011832
S	475	A475A	gcC	gcT	54	55	B.1.234	0.007125
S	475	A475A	gcC	gcA	1	55	B.1.234	0.000132
S	475	A475A	gcC	gcT	53	53	B.1.1.434	0.018473
S	475	A475A	gcC	gcT	42	50	AY.43	0.000186
S	475	A475A	gcC	gcA	8	50	AY.43	0.000035
S	475	A475A	gcC	gcT	48	48	P.1.14	0.002294
S	475	A475A	gcC	gcT	41	41	C.37	0.004759
S	475	A475A	gcC	gcT	36	36	B.1.258	0.002396
S	475	A475A	gcC	gcT	35	35	B.1.311	0.00961
S	475	A475A	gcC	gcT	33	33	B.1.160	0.001029
S	475	A475A	gcC	gcT	32	32	B.1.526	0.000752
S	475	A475A	gcC	gcT	31	31	AY.119	0.001095
S	475	A475A	gcC	gcT	31	31	B.1.1.519	0.001231
S	475	A475A	gcC	gcA	28	28	B.1.177.38	0.291667
S	475	A475A	gcC	gcA	15	28	B.1.36.24	0.092593
S	475	A475A	gcC	gcT	13	28	B.1.36.24	0.080247
S	475	A475A	gcC	gcT	28	28	B.1.429	0.000659
S	475	A475A	gcC	gcT	26	26	AY.120	0.000967
S	475	A475A	gcC	gcT	24	24	AE.6	0.923077
S	475	A475A	gcC	gcT	22	24	AY.103	0.000137
S	475	A475A	gcC	gcA	2	24	AY.103	0.000012
S	475	A475A	gcC	gcT	24	24	AY.29	0.000379
S	475	A475A	gcC	gcT	20	20	B.1.400	0.00858
S	475	A475A	gcC	gcT	20	20	P.1.17	0.003235
S	475	A475A	gcC	gcA	11	19	AY.102	0.000292
S	475	A475A	gcC	gcT	8	19	AY.102	0.000212
S	475	A475A	gcC	gcT	18	19	B.1.596	0.001568
S	475	A475A	gcC	gcA	1	19	B.1.596	0.000087
S	475	A475A	gcC	gcT	18	18	B.1.177.44	0.009341
S	475	A475A	gcC	gcT	18	18	B.1.567	0.06
S	475	A475A	gcC	gcT	17	17	B.1.177.54	0.010309
S	475	A475A	gcC	gcT	17	17	B.1.517	0.007259
S	475	A475A	gcC	gcT	16	16	B.1.177.75	0.016649
S	475	A475A	gcC	gcT	16	16	B.1.619.1	0.010263
S	475	A475A	gcC	gcT	15	15	AY.121	0.00203
S	475	A475A	gcC	gcT	15	15	B.1.221	0.001065
S	475	A475A	gcC	gcT	14	14	B.1.416	0.017766
S	475	A475A	gcC	gcT	14	14	B.1.621	0.001239
S	475	A475A	gcC	gcT	13	13	B.1.177.87	0.009461
S	475	A475A	gcC	gcT	13	13	B.1.340	0.055794
S	475	A475A	gcC	gcT	13	13	B.1.369	0.003708
S	475	A475A	gcC	gcT	12	12	AY.30	0.004749
S	475	A475A	gcC	gcT	12	12	B.1.1.70	0.004093
S	475	A475A	gcC	gcT	11	11	AY.3	0.000109
S	475	A475A	gcC	gcT	11	11	B.1.177.62	0.013111
S	475	A475A	gcC	gcT	11	11	B.1.466.2	0.004304
S	475	A475A	gcC	gcT	8	10	AY.39	0.000198
S	475	A475A	gcC	gcA	2	10	AY.39	0.000049
S	475	A475A	gcC	gcT	10	10	B.1.1.318	0.003018
S	475	A475A	gcC	gcT	10	10	B.1.177.56	0.006676
S	475	A475A	gcC	gcT	9	10	B.1.36	0.001313
S	475	A475A	gcC	gcA	1	10	B.1.36	0.000146
S	475	A475A	gcC	gcT	10	10	B.1.595	0.00261
S	475	A475A	gcC	gcT	10	10	P.1.15	0.002323
S	475	A475A	gcC	gcT	6	10	P.2	0.00112
S	475	A475A	gcC	gcA	4	10	P.2	0.000747
S	475	A475A	gcC	gcT	9	9	AY.20	0.00035
S	475	A475A	gcC	gcT	9	9	AY.5	0.000186
S	475	A475A	gcC	gcT	9	9	B.1.1.317	0.003705
S	475	A475A	gcC	gcT	9	9	B.1.36.8	0.009
S	475	A475A	gcC	gcT	8	9	D.2	0.0006
S	475	A475A	gcC	gcA	1	9	D.2	0.000075
S	475	A475A	gcC	gcT	9	9	P.7	0.039301
S	475	A475A	gcC	gcT	8	8	B.1.1.28	0.00249
S	475	A475A	gcC	gcT	8	8	B.1.1.420	0.008048
S	475	A475A	gcC	gcT	8	8	B.1.177.72	0.027119
S	475	A475A	gcC	gcT	8	8	C.18	0.020725
S	475	A475A	gcC	gcT	7	7	AE.8	0.003423
S	475	A475A	gcC	gcT	6	7	AY.117	0.000507
S	475	A475A	gcC	gcA	1	7	AY.117	0.000085
S	475	A475A	gcC	gcT	6	7	AY.3.1	0.000512
S	475	A475A	gcC	gcG	1	7	AY.3.1	0.000085
S	475	A475A	gcC	gcT	7	7	AY.9	0.000473
S	475	A475A	gcC	gcT	5	7	B	0.000639
S	475	A475A	gcC	gcA	2	7	B	0.000256
S	475	A475A	gcC	gcT	7	7	B.1.1.284	0.000752
S	475	A475A	gcC	gcT	7	7	B.1.1.294	0.008861
S	475	A475A	gcC	gcT	7	7	B.1.243	0.000487
S	475	A475A	gcC	gcT	7	7	B.1.396	0.00494
S	475	A475A	gcC	gcT	7	7	B.1.525	0.000792
S	475	A475A	gcC	gcT	6	7	Q.8	0.000989
S	475	A475A	gcC	gcA	1	7	Q.8	0.000165
S	475	A475A	gcC	gcA	6	6	AY.55	0.005505
S	475	A475A	gcC	gcT	6	6	AY.6	0.000247
S	475	A475A	gcC	gcT	6	6	B.1.146	0.025424
S	475	A475A	gcC	gcT	6	6	B.1.177.7	0.000989
S	475	A475A	gcC	gcT	6	6	B.1.575	0.00182
S	475	A475A	gcC	gcT	6	6	B.1.575.1	0.014634
S	475	A475A	gcC	gcT	6	6	B.1.637	0.000438
S	475	A475A	gcC	gcA	5	6	C.35	0.00387
S	475	A475A	gcC	gcT	1	6	C.35	0.000774
S	475	A475A	gcC	gcT	5	5	AY.100	0.00023
S	475	A475A	gcC	gcT	5	5	AY.42	0.000201
S	475	A475A	gcC	gcT	5	5	B.1.1.33	0.002104
S	475	A475A	gcC	gcT	5	5	B.1.1.39	0.002548
S	475	A475A	gcC	gcT	5	5	B.1.1.409	0.014164
S	475	A475A	gcC	gcT	5	5	B.1.110.3	0.003592
S	475	A475A	gcC	gcT	4	5	B.1.177.12	0.000607
S	475	A475A	gcC	gcG	1	5	B.1.177.12	0.000152
S	475	A475A	gcC	gcT	5	5	B.1.177.50	0.023474
S	475	A475A	gcC	gcT	5	5	B.1.3	0.013089
S	475	A475A	gcC	gcT	5	5	B.1.497	0.001574
S	475	A475A	gcC	gcT	5	5	B.1.609	0.002397
S	475	A475A	gcC	gcT	5	5	C.36	0.004554
S	475	A475A	gcC	gcT	4	4	AY.118	0.000251
S	475	A475A	gcC	gcT	4	4	B.1.1.413	0.027586
S	475	A475A	gcC	gcT	4	4	B.1.177.73	0.002265
S	475	A475A	gcC	gcT	4	4	B.1.232	0.002149
S	475	A475A	gcC	gcT	4	4	B.1.236	0.008214
S	475	A475A	gcC	gcT	4	4	B.1.241	0.003247
S	475	A475A	gcC	gcT	4	4	B.1.351.2	0.00121
S	475	A475A	gcC	gcT	4	4	B.1.404	0.005208
S	475	A475A	gcC	gcT	4	4	B.1.438.1	0.000429
S	475	A475A	gcC	gcT	3	4	B.1.577	0.002062
S	475	A475A	gcC	gcA	1	4	B.1.577	0.000687
S	475	A475A	gcC	gcT	4	4	B.1.617.1	0.000516
S	475	A475A	gcC	gcT	3	3	A	0.001161
S	475	A475A	gcC	gcT	3	3	A.1	0.000846
S	475	A475A	gcC	gcT	2	3	AY.26	0.000057
S	475	A475A	gcC	gcA	1	3	AY.26	0.000028
S	475	A475A	gcC	gcT	3	3	AY.34	0.000291
S	475	A475A	gcC	gcT	3	3	AY.46	0.000312
S	475	A475A	gcC	gcT	3	3	AY.5.4	0.00083
S	475	A475A	gcC	gcT	3	3	AY.51	0.002727
S	475	A475A	gcC	gcT	3	3	AY.75.1	0.000541
S	475	A475A	gcC	gcT	3	3	AY.85	0.001282
S	475	A475A	gcC	gcT	3	3	AY.98	0.000237
S	475	A475A	gcC	gcT	2	3	AY.98.1	0.000097
S	475	A475A	gcC	gcA	1	3	AY.98.1	0.000048
S	475	A475A	gcC	gcT	3	3	B.1.1.153	0.003286
S	475	A475A	gcC	gcT	3	3	B.1.1.176	0.001318
S	475	A475A	gcC	gcT	2	3	B.1.1.216	0.001781
S	475	A475A	gcC	gcA	1	3	B.1.1.216	0.00089
S	475	A475A	gcC	gcT	2	3	B.1.1.25	0.001137
S	475	A475A	gcC	gcA	1	3	B.1.1.25	0.000569
S	475	A475A	gcC	gcT	2	3	B.1.1.277	0.001517
S	475	A475A	gcC	gcA	1	3	B.1.1.277	0.000759
S	475	A475A	gcC	gcT	2	3	B.1.1.316	0.00185
S	475	A475A	gcC	gcA	1	3	B.1.1.316	0.000925
S	475	A475A	gcC	gcT	3	3	B.1.1.41	0.018987
S	475	A475A	gcC	gcA	3	3	B.1.177.10	0.002634
S	475	A475A	gcC	gcT	3	3	B.1.177.86	0.00055
S	475	A475A	gcC	gcT	3	3	B.1.184	0.176471
S	475	A475A	gcC	gcT	3	3	B.1.240	0.000647
S	475	A475A	gcC	gcT	3	3	B.1.258.17	0.000312
S	475	A475A	gcC	gcT	3	3	B.1.36.29	0.001552
S	475	A475A	gcC	gcT	3	3	B.1.391	0.003382
S	475	A475A	gcC	gcT	3	3	B.1.597	0.013889
S	475	A475A	gcC	gcT	3	3	B.1.621.1	0.001517
S	475	A475A	gcC	gcT	2	3	Q.1	0.000253
S	475	A475A	gcC	gcA	1	3	Q.1	0.000126
S	475	A475A	gcC	gcT	3	3	Q.6	0.019868
S	475	A475A	gcC	gcT	3	3	R.1	0.00027
S	475	A475A	gcC	gcT	2	2	AE.1	0.022727
S	475	A475A	gcC	gcT	2	2	AY.110	0.000225
S	475	A475A	gcC	gcT	2	2	AY.16	0.000759
S	475	A475A	gcC	gcT	2	2	AY.23	0.000139
S	475	A475A	gcC	gcT	2	2	AY.45	0.000243
S	475	A475A	gcC	gcT	2	2	AY.59	0.001059
S	475	A475A	gcC	gcT	2	2	AY.61	0.00021
S	475	A475A	gcC	gcT	2	2	B.1.1.174	0.006757
S	475	A475A	gcC	gcT	2	2	B.1.1.348	0.001592
S	475	A475A	gcC	gcA	2	2	B.1.1.50	0.001358
S	475	A475A	gcC	gcT	2	2	B.1.1.63	0.000772
S	475	A475A	gcC	gcT	2	2	B.1.128	0.001271
S	475	A475A	gcC	gcT	2	2	B.1.139	0.001466
S	475	A475A	gcC	gcT	2	2	B.1.177.35	0.001382
S	475	A475A	gcC	gcT	2	2	B.1.177.55	0.004662
S	475	A475A	gcC	gcT	2	2	B.1.177.57	0.000562
S	475	A475A	gcC	gcT	2	2	B.1.199	0.008264
S	475	A475A	gcC	gcT	2	2	B.1.206	0.001631
S	475	A475A	gcC	gcT	2	2	B.1.222	0.003384
S	475	A475A	gcC	gcG	1	2	B.1.258.4	0.003448
S	475	A475A	gcC	gcT	1	2	B.1.258.4	0.003448
S	475	A475A	gcC	gcT	2	2	B.1.36.17	0.000988
S	475	A475A	gcC	gcT	2	2	B.1.395	0.014085
S	475	A475A	gcC	gcA	2	2	B.1.427	0.000101
S	475	A475A	gcC	gcT	2	2	B.1.428	0.002041
S	475	A475A	gcC	gcT	2	2	B.1.509	0.001732
S	475	A475A	gcC	gcT	2	2	B.1.523	0.004902
S	475	A475A	gcC	gcT	2	2	B.1.530	0.014286
S	475	A475A	gcC	gcT	2	2	B.1.551	0.002581
S	475	A475A	gcC	gcT	2	2	B.1.558	0.009132
S	475	A475A	gcC	gcT	2	2	B.1.576	0.001813
S	475	A475A	gcC	gcT	2	2	B.1.600	0.011696
S	475	A475A	gcC	gcA	1	2	B.3	0.000831
S	475	A475A	gcC	gcT	1	2	B.3	0.000831
S	475	A475A	gcC	gcT	2	2	C.1.2	0.008511
S	475	A475A	gcC	gcT	2	2	P.1.2	0.002312
S	475	A475A	gcC	gcT	1	1	A.2.5	0.000499
S	475	A475A	gcC	gcT	1	1	A.27	0.001656
S	475	A475A	gcC	gcT	1	1	AD.2	0.000219
S	475	A475A	gcC	gcT	1	1	AF.1	0.037037
S	475	A475A	gcC	gcT	1	1	AU.3	0.00211
S	475	A475A	gcC	gcT	1	1	AY.108	0.001103
S	475	A475A	gcC	gcT	1	1	AY.14	0.000088
S	475	A475A	gcC	gcT	1	1	AY.24	0.000431
S	475	A475A	gcC	gcT	1	1	AY.33	0.000067
S	475	A475A	gcC	gcT	1	1	AY.36	0.000148
S	475	A475A	gcC	gcT	1	1	AY.39.1	0.00004
S	475	A475A	gcC	gcT	1	1	AY.4.2	0.000022
S	475	A475A	gcC	gcT	1	1	AY.47	0.000031
S	475	A475A	gcC	gcT	1	1	AY.5.3	0.000337
S	475	A475A	gcC	gcT	1	1	AY.53	0.000288
S	475	A475A	gcC	gcT	1	1	AY.54	0.000095
S	475	A475A	gcC	gcT	1	1	AY.65	0.000533
S	475	A475A	gcC	gcA	1	1	AY.7.1	0.000113
S	475	A475A	gcC	gcT	1	1	AY.70	0.000209
S	475	A475A	gcC	gcT	1	1	AY.74	0.000116
S	475	A475A	gcC	gcT	1	1	AY.90	0.000684
S	475	A475A	gcC	gcA	1	1	B.1.1.1	0.000327
S	475	A475A	gcC	gcT	1	1	B.1.1.10	0.001115
S	475	A475A	gcC	gcT	1	1	B.1.1.141	0.002012
S	475	A475A	gcC	gcT	1	1	B.1.1.170	0.001247
S	475	A475A	gcC	gcT	1	1	B.1.1.196	0.005714
S	475	A475A	gcC	gcT	1	1	B.1.1.207	0.001182
S	475	A475A	gcC	gcT	1	1	B.1.1.237	0.005405
S	475	A475A	gcC	gcT	1	1	B.1.1.251	0.007937
S	475	A475A	gcC	gcT	1	1	B.1.1.253	0.002506
S	475	A475A	gcC	gcT	1	1	B.1.1.273	0.006757
S	475	A475A	gcC	gcT	1	1	B.1.1.274	0.005051
S	475	A475A	gcC	gcT	1	1	B.1.1.282	0.011628
S	475	A475A	gcC	gcT	1	1	B.1.1.286	0.002899
S	475	A475A	gcC	gcT	1	1	B.1.1.291	0.000742
S	475	A475A	gcC	gcT	1	1	B.1.1.297	0.002237
S	475	A475A	gcC	gcT	1	1	B.1.1.302	0.002075
S	475	A475A	gcC	gcT	1	1	B.1.1.306	0.000438
S	475	A475A	gcC	gcT	1	1	B.1.1.312	0.001912
S	475	A475A	gcC	gcT	1	1	B.1.1.335	0.012987
S	475	A475A	gcC	gcT	1	1	B.1.1.366	0.015873
S	475	A475A	gcC	gcT	1	1	B.1.1.369	0.000446
S	475	A475A	gcC	gcT	1	1	B.1.1.404	0.015873
S	475	A475A	gcC	gcT	1	1	B.1.1.412	0.007634
S	475	A475A	gcC	gcT	1	1	B.1.1.432	0.001266
S	475	A475A	gcC	gcT	1	1	B.1.1.437	0.010417
S	475	A475A	gcC	gcT	1	1	B.1.1.44	0.00241
S	475	A475A	gcC	gcT	1	1	B.1.1.46	0.004367
S	475	A475A	gcC	gcT	1	1	B.1.1.464	0.001473
S	475	A475A	gcC	gcT	1	1	B.1.1.486	0.001577
S	475	A475A	gcC	gcA	1	1	B.1.1.512	0.028571
S	475	A475A	gcC	gcT	1	1	B.1.1.523	0.001563
S	475	A475A	gcC	gcT	1	1	B.1.1.57	0.011494
S	475	A475A	gcC	gcT	1	1	B.1.113	0.015625
S	475	A475A	gcC	gcT	1	1	B.1.160.15	0.00495
S	475	A475A	gcC	gcT	1	1	B.1.173	0.026316
S	475	A475A	gcC	gcT	1	1	B.1.177.15	0.000631
S	475	A475A	gcC	gcA	1	1	B.1.177.19	0.001431
S	475	A475A	gcC	gcT	1	1	B.1.177.4	0.000211
S	475	A475A	gcC	gcT	1	1	B.1.177.40	0.005155
S	475	A475A	gcC	gcT	1	1	B.1.177.60	0.000218
S	475	A475A	gcC	gcT	1	1	B.1.177.69	0.001484
S	475	A475A	gcC	gcT	1	1	B.1.177.81	0.000189
S	475	A475A	gcC	gcT	1	1	B.1.182	0.007246
S	475	A475A	gcC	gcT	1	1	B.1.214.2	0.0006
S	475	A475A	gcC	gcT	1	1	B.1.219	0.009434
S	475	A475A	gcC	gcT	1	1	B.1.23	0.006061
S	475	A475A	gcC	gcT	1	1	B.1.237	0.004975
S	475	A475A	gcC	gcT	1	1	B.1.240.2	0.030303
S	475	A475A	gcC	gcT	1	1	B.1.258.11	0.000396
S	475	A475A	gcC	gcT	1	1	B.1.258.3	0.001675
S	475	A475A	gcC	gcT	1	1	B.1.258.7	0.001912
S	475	A475A	gcC	gcT	1	1	B.1.302	0.013333
S	475	A475A	gcC	gcT	1	1	B.1.351.5	0.0006
S	475	A475A	gcC	gcA	1	1	B.1.36.10	0.004785
S	475	A475A	gcC	gcT	1	1	B.1.36.9	0.003215
S	475	A475A	gcC	gcT	1	1	B.1.361	0.001289
S	475	A475A	gcC	gcT	1	1	B.1.362	0.001541
S	475	A475A	gcC	gcT	1	1	B.1.389	0.001002
S	475	A475A	gcC	gcT	1	1	B.1.397	0.004854
S	475	A475A	gcC	gcT	1	1	B.1.398	0.002976
S	475	A475A	gcC	gcT	1	1	B.1.402	0.009804
S	475	A475A	gcC	gcT	1	1	B.1.421	0.007463
S	475	A475A	gcC	gcT	1	1	B.1.433	0.003195
S	475	A475A	gcC	gcT	1	1	B.1.436	0.001029
S	475	A475A	gcC	gcT	1	1	B.1.443	0.004673
S	475	A475A	gcC	gcT	1	1	B.1.446	0.02
S	475	A475A	gcC	gcT	1	1	B.1.456	0.003268
S	475	A475A	gcC	gcT	1	1	B.1.467	0.04
S	475	A475A	gcC	gcT	1	1	B.1.470	0.001404
S	475	A475A	gcC	gcT	1	1	B.1.496	0.125
S	475	A475A	gcC	gcT	1	1	B.1.499	0.00105
S	475	A475A	gcC	gcT	1	1	B.1.513	0.013889
S	475	A475A	gcC	gcA	1	1	B.1.517.1	0.005263
S	475	A475A	gcC	gcT	1	1	B.1.524	0.001406
S	475	A475A	gcC	gcT	1	1	B.1.546	0.003704
S	475	A475A	gcC	gcT	1	1	B.1.565	0.00081
S	475	A475A	gcC	gcT	1	1	B.1.586	0.010989
S	475	A475A	gcC	gcT	1	1	B.1.590	0.004545
S	475	A475A	gcC	gcT	1	1	B.1.612	0.002653
S	475	A475A	gcC	gcT	1	1	B.1.623	0.000536
S	475	A475A	gcC	gcT	1	1	B.1.625	0.002353
S	475	A475A	gcC	gcT	1	1	B.1.628	0.000352
S	475	A475A	gcC	gcT	1	1	B.1.632	0.006711
S	475	A475A	gcC	gcT	1	1	B.1.91	0.002075
S	475	A475A	gcC	gcT	1	1	B.23	0.002924
S	475	A475A	gcC	gcT	1	1	C.16	0.00106
S	475	A475A	gcC	gcT	1	1	C.26	0.007353
S	475	A475A	gcC	gcT	1	1	C.4	0.01
S	475	A475A	gcC	gcT	1	1	L.4	0.05
S	475	A475A	gcC	gcT	1	1	M.1	0.023256
S	475	A475A	gcC	gcT	1	1	N.1	0.016949
S	475	A475A	gcC	gcT	1	1	N.3	0.005814
S	475	A475A	gcC	gcT	1	1	Q.3	0.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.