CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 475 | A475A | syn | gcC | gcT | 12870 | 12516 | 0.972494 | 22985-22987 | |
S | 475 | A475A | syn | gcC | gcA | 12870 | 344 | 0.0267288 | 22985-22987 | |
S | 475 | A475A | syn | gcC | gcG | 12870 | 10 | 0.000777001 | 22985-22987 |
Details of the mutation A475A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 475 | A475A | gcC | gcT | 12516 | 12870 | All | 0.002394 |
S | 475 | A475A | gcC | gcA | 344 | 12870 | All | 0.000066 |
S | 475 | A475A | gcC | gcG | 10 | 12870 | All | 0.000002 |
S | 475 | A475A | gcC | gcT | 3151 | 3177 | B.1.1.7 | 0.002821 |
S | 475 | A475A | gcC | gcA | 22 | 3177 | B.1.1.7 | 0.00002 |
S | 475 | A475A | gcC | gcG | 4 | 3177 | B.1.1.7 | 0.000004 |
S | 475 | A475A | gcC | gcT | 2151 | 2151 | AY.94 | 0.952191 |
S | 475 | A475A | gcC | gcT | 1523 | 1523 | B.1.351 | 0.045273 |
S | 475 | A475A | gcC | gcT | 874 | 874 | B.1.1.416 | 0.79095 |
S | 475 | A475A | gcC | gcT | 539 | 539 | B.1.619 | 0.469512 |
S | 475 | A475A | gcC | gcT | 496 | 496 | B.1.177.21 | 0.037929 |
S | 475 | A475A | gcC | gcT | 266 | 419 | AY.4 | 0.000414 |
S | 475 | A475A | gcC | gcA | 152 | 419 | AY.4 | 0.000237 |
S | 475 | A475A | gcC | gcG | 1 | 419 | AY.4 | 0.000002 |
S | 475 | A475A | gcC | gcT | 310 | 315 | AY.44 | 0.001887 |
S | 475 | A475A | gcC | gcA | 5 | 315 | AY.44 | 0.00003 |
S | 475 | A475A | gcC | gcT | 255 | 265 | B.1 | 0.002336 |
S | 475 | A475A | gcC | gcA | 8 | 265 | B.1 | 0.000073 |
S | 475 | A475A | gcC | gcG | 2 | 265 | B.1 | 0.000018 |
S | 475 | A475A | gcC | gcT | 206 | 219 | B.1.2 | 0.001814 |
S | 475 | A475A | gcC | gcA | 13 | 219 | B.1.2 | 0.000114 |
S | 475 | A475A | gcC | gcT | 211 | 213 | B.1.177 | 0.002778 |
S | 475 | A475A | gcC | gcA | 2 | 213 | B.1.177 | 0.000026 |
S | 475 | A475A | gcC | gcT | 190 | 198 | P.1 | 0.002993 |
S | 475 | A475A | gcC | gcA | 8 | 198 | P.1 | 0.000126 |
S | 475 | A475A | gcC | gcT | 163 | 164 | B.1.1 | 0.002957 |
S | 475 | A475A | gcC | gcA | 1 | 164 | B.1.1 | 0.000018 |
S | 475 | A475A | gcC | gcT | 146 | 158 | B.1.617.2 | 0.00055 |
S | 475 | A475A | gcC | gcA | 12 | 158 | B.1.617.2 | 0.000045 |
S | 475 | A475A | gcC | gcT | 121 | 122 | AY.75 | 0.006779 |
S | 475 | A475A | gcC | gcA | 1 | 122 | AY.75 | 0.000056 |
S | 475 | A475A | gcC | gcT | 118 | 119 | AY.9.2 | 0.004334 |
S | 475 | A475A | gcC | gcA | 1 | 119 | AY.9.2 | 0.000037 |
S | 475 | A475A | gcC | gcT | 96 | 96 | B.1.399 | 0.185687 |
S | 475 | A475A | gcC | gcT | 71 | 79 | AY.25 | 0.000427 |
S | 475 | A475A | gcC | gcA | 8 | 79 | AY.25 | 0.000048 |
S | 475 | A475A | gcC | gcT | 67 | 67 | B.1.1.214 | 0.003716 |
S | 475 | A475A | gcC | gcT | 58 | 58 | B.1.1.222 | 0.011832 |
S | 475 | A475A | gcC | gcT | 54 | 55 | B.1.234 | 0.007125 |
S | 475 | A475A | gcC | gcA | 1 | 55 | B.1.234 | 0.000132 |
S | 475 | A475A | gcC | gcT | 53 | 53 | B.1.1.434 | 0.018473 |
S | 475 | A475A | gcC | gcT | 42 | 50 | AY.43 | 0.000186 |
S | 475 | A475A | gcC | gcA | 8 | 50 | AY.43 | 0.000035 |
S | 475 | A475A | gcC | gcT | 48 | 48 | P.1.14 | 0.002294 |
S | 475 | A475A | gcC | gcT | 41 | 41 | C.37 | 0.004759 |
S | 475 | A475A | gcC | gcT | 36 | 36 | B.1.258 | 0.002396 |
S | 475 | A475A | gcC | gcT | 35 | 35 | B.1.311 | 0.00961 |
S | 475 | A475A | gcC | gcT | 33 | 33 | B.1.160 | 0.001029 |
S | 475 | A475A | gcC | gcT | 32 | 32 | B.1.526 | 0.000752 |
S | 475 | A475A | gcC | gcT | 31 | 31 | AY.119 | 0.001095 |
S | 475 | A475A | gcC | gcT | 31 | 31 | B.1.1.519 | 0.001231 |
S | 475 | A475A | gcC | gcA | 28 | 28 | B.1.177.38 | 0.291667 |
S | 475 | A475A | gcC | gcA | 15 | 28 | B.1.36.24 | 0.092593 |
S | 475 | A475A | gcC | gcT | 13 | 28 | B.1.36.24 | 0.080247 |
S | 475 | A475A | gcC | gcT | 28 | 28 | B.1.429 | 0.000659 |
S | 475 | A475A | gcC | gcT | 26 | 26 | AY.120 | 0.000967 |
S | 475 | A475A | gcC | gcT | 24 | 24 | AE.6 | 0.923077 |
S | 475 | A475A | gcC | gcT | 22 | 24 | AY.103 | 0.000137 |
S | 475 | A475A | gcC | gcA | 2 | 24 | AY.103 | 0.000012 |
S | 475 | A475A | gcC | gcT | 24 | 24 | AY.29 | 0.000379 |
S | 475 | A475A | gcC | gcT | 20 | 20 | B.1.400 | 0.00858 |
S | 475 | A475A | gcC | gcT | 20 | 20 | P.1.17 | 0.003235 |
S | 475 | A475A | gcC | gcA | 11 | 19 | AY.102 | 0.000292 |
S | 475 | A475A | gcC | gcT | 8 | 19 | AY.102 | 0.000212 |
S | 475 | A475A | gcC | gcT | 18 | 19 | B.1.596 | 0.001568 |
S | 475 | A475A | gcC | gcA | 1 | 19 | B.1.596 | 0.000087 |
S | 475 | A475A | gcC | gcT | 18 | 18 | B.1.177.44 | 0.009341 |
S | 475 | A475A | gcC | gcT | 18 | 18 | B.1.567 | 0.06 |
S | 475 | A475A | gcC | gcT | 17 | 17 | B.1.177.54 | 0.010309 |
S | 475 | A475A | gcC | gcT | 17 | 17 | B.1.517 | 0.007259 |
S | 475 | A475A | gcC | gcT | 16 | 16 | B.1.177.75 | 0.016649 |
S | 475 | A475A | gcC | gcT | 16 | 16 | B.1.619.1 | 0.010263 |
S | 475 | A475A | gcC | gcT | 15 | 15 | AY.121 | 0.00203 |
S | 475 | A475A | gcC | gcT | 15 | 15 | B.1.221 | 0.001065 |
S | 475 | A475A | gcC | gcT | 14 | 14 | B.1.416 | 0.017766 |
S | 475 | A475A | gcC | gcT | 14 | 14 | B.1.621 | 0.001239 |
S | 475 | A475A | gcC | gcT | 13 | 13 | B.1.177.87 | 0.009461 |
S | 475 | A475A | gcC | gcT | 13 | 13 | B.1.340 | 0.055794 |
S | 475 | A475A | gcC | gcT | 13 | 13 | B.1.369 | 0.003708 |
S | 475 | A475A | gcC | gcT | 12 | 12 | AY.30 | 0.004749 |
S | 475 | A475A | gcC | gcT | 12 | 12 | B.1.1.70 | 0.004093 |
S | 475 | A475A | gcC | gcT | 11 | 11 | AY.3 | 0.000109 |
S | 475 | A475A | gcC | gcT | 11 | 11 | B.1.177.62 | 0.013111 |
S | 475 | A475A | gcC | gcT | 11 | 11 | B.1.466.2 | 0.004304 |
S | 475 | A475A | gcC | gcT | 8 | 10 | AY.39 | 0.000198 |
S | 475 | A475A | gcC | gcA | 2 | 10 | AY.39 | 0.000049 |
S | 475 | A475A | gcC | gcT | 10 | 10 | B.1.1.318 | 0.003018 |
S | 475 | A475A | gcC | gcT | 10 | 10 | B.1.177.56 | 0.006676 |
S | 475 | A475A | gcC | gcT | 9 | 10 | B.1.36 | 0.001313 |
S | 475 | A475A | gcC | gcA | 1 | 10 | B.1.36 | 0.000146 |
S | 475 | A475A | gcC | gcT | 10 | 10 | B.1.595 | 0.00261 |
S | 475 | A475A | gcC | gcT | 10 | 10 | P.1.15 | 0.002323 |
S | 475 | A475A | gcC | gcT | 6 | 10 | P.2 | 0.00112 |
S | 475 | A475A | gcC | gcA | 4 | 10 | P.2 | 0.000747 |
S | 475 | A475A | gcC | gcT | 9 | 9 | AY.20 | 0.00035 |
S | 475 | A475A | gcC | gcT | 9 | 9 | AY.5 | 0.000186 |
S | 475 | A475A | gcC | gcT | 9 | 9 | B.1.1.317 | 0.003705 |
S | 475 | A475A | gcC | gcT | 9 | 9 | B.1.36.8 | 0.009 |
S | 475 | A475A | gcC | gcT | 8 | 9 | D.2 | 0.0006 |
S | 475 | A475A | gcC | gcA | 1 | 9 | D.2 | 0.000075 |
S | 475 | A475A | gcC | gcT | 9 | 9 | P.7 | 0.039301 |
S | 475 | A475A | gcC | gcT | 8 | 8 | B.1.1.28 | 0.00249 |
S | 475 | A475A | gcC | gcT | 8 | 8 | B.1.1.420 | 0.008048 |
S | 475 | A475A | gcC | gcT | 8 | 8 | B.1.177.72 | 0.027119 |
S | 475 | A475A | gcC | gcT | 8 | 8 | C.18 | 0.020725 |
S | 475 | A475A | gcC | gcT | 7 | 7 | AE.8 | 0.003423 |
S | 475 | A475A | gcC | gcT | 6 | 7 | AY.117 | 0.000507 |
S | 475 | A475A | gcC | gcA | 1 | 7 | AY.117 | 0.000085 |
S | 475 | A475A | gcC | gcT | 6 | 7 | AY.3.1 | 0.000512 |
S | 475 | A475A | gcC | gcG | 1 | 7 | AY.3.1 | 0.000085 |
S | 475 | A475A | gcC | gcT | 7 | 7 | AY.9 | 0.000473 |
S | 475 | A475A | gcC | gcT | 5 | 7 | B | 0.000639 |
S | 475 | A475A | gcC | gcA | 2 | 7 | B | 0.000256 |
S | 475 | A475A | gcC | gcT | 7 | 7 | B.1.1.284 | 0.000752 |
S | 475 | A475A | gcC | gcT | 7 | 7 | B.1.1.294 | 0.008861 |
S | 475 | A475A | gcC | gcT | 7 | 7 | B.1.243 | 0.000487 |
S | 475 | A475A | gcC | gcT | 7 | 7 | B.1.396 | 0.00494 |
S | 475 | A475A | gcC | gcT | 7 | 7 | B.1.525 | 0.000792 |
S | 475 | A475A | gcC | gcT | 6 | 7 | Q.8 | 0.000989 |
S | 475 | A475A | gcC | gcA | 1 | 7 | Q.8 | 0.000165 |
S | 475 | A475A | gcC | gcA | 6 | 6 | AY.55 | 0.005505 |
S | 475 | A475A | gcC | gcT | 6 | 6 | AY.6 | 0.000247 |
S | 475 | A475A | gcC | gcT | 6 | 6 | B.1.146 | 0.025424 |
S | 475 | A475A | gcC | gcT | 6 | 6 | B.1.177.7 | 0.000989 |
S | 475 | A475A | gcC | gcT | 6 | 6 | B.1.575 | 0.00182 |
S | 475 | A475A | gcC | gcT | 6 | 6 | B.1.575.1 | 0.014634 |
S | 475 | A475A | gcC | gcT | 6 | 6 | B.1.637 | 0.000438 |
S | 475 | A475A | gcC | gcA | 5 | 6 | C.35 | 0.00387 |
S | 475 | A475A | gcC | gcT | 1 | 6 | C.35 | 0.000774 |
S | 475 | A475A | gcC | gcT | 5 | 5 | AY.100 | 0.00023 |
S | 475 | A475A | gcC | gcT | 5 | 5 | AY.42 | 0.000201 |
S | 475 | A475A | gcC | gcT | 5 | 5 | B.1.1.33 | 0.002104 |
S | 475 | A475A | gcC | gcT | 5 | 5 | B.1.1.39 | 0.002548 |
S | 475 | A475A | gcC | gcT | 5 | 5 | B.1.1.409 | 0.014164 |
S | 475 | A475A | gcC | gcT | 5 | 5 | B.1.110.3 | 0.003592 |
S | 475 | A475A | gcC | gcT | 4 | 5 | B.1.177.12 | 0.000607 |
S | 475 | A475A | gcC | gcG | 1 | 5 | B.1.177.12 | 0.000152 |
S | 475 | A475A | gcC | gcT | 5 | 5 | B.1.177.50 | 0.023474 |
S | 475 | A475A | gcC | gcT | 5 | 5 | B.1.3 | 0.013089 |
S | 475 | A475A | gcC | gcT | 5 | 5 | B.1.497 | 0.001574 |
S | 475 | A475A | gcC | gcT | 5 | 5 | B.1.609 | 0.002397 |
S | 475 | A475A | gcC | gcT | 5 | 5 | C.36 | 0.004554 |
S | 475 | A475A | gcC | gcT | 4 | 4 | AY.118 | 0.000251 |
S | 475 | A475A | gcC | gcT | 4 | 4 | B.1.1.413 | 0.027586 |
S | 475 | A475A | gcC | gcT | 4 | 4 | B.1.177.73 | 0.002265 |
S | 475 | A475A | gcC | gcT | 4 | 4 | B.1.232 | 0.002149 |
S | 475 | A475A | gcC | gcT | 4 | 4 | B.1.236 | 0.008214 |
S | 475 | A475A | gcC | gcT | 4 | 4 | B.1.241 | 0.003247 |
S | 475 | A475A | gcC | gcT | 4 | 4 | B.1.351.2 | 0.00121 |
S | 475 | A475A | gcC | gcT | 4 | 4 | B.1.404 | 0.005208 |
S | 475 | A475A | gcC | gcT | 4 | 4 | B.1.438.1 | 0.000429 |
S | 475 | A475A | gcC | gcT | 3 | 4 | B.1.577 | 0.002062 |
S | 475 | A475A | gcC | gcA | 1 | 4 | B.1.577 | 0.000687 |
S | 475 | A475A | gcC | gcT | 4 | 4 | B.1.617.1 | 0.000516 |
S | 475 | A475A | gcC | gcT | 3 | 3 | A | 0.001161 |
S | 475 | A475A | gcC | gcT | 3 | 3 | A.1 | 0.000846 |
S | 475 | A475A | gcC | gcT | 2 | 3 | AY.26 | 0.000057 |
S | 475 | A475A | gcC | gcA | 1 | 3 | AY.26 | 0.000028 |
S | 475 | A475A | gcC | gcT | 3 | 3 | AY.34 | 0.000291 |
S | 475 | A475A | gcC | gcT | 3 | 3 | AY.46 | 0.000312 |
S | 475 | A475A | gcC | gcT | 3 | 3 | AY.5.4 | 0.00083 |
S | 475 | A475A | gcC | gcT | 3 | 3 | AY.51 | 0.002727 |
S | 475 | A475A | gcC | gcT | 3 | 3 | AY.75.1 | 0.000541 |
S | 475 | A475A | gcC | gcT | 3 | 3 | AY.85 | 0.001282 |
S | 475 | A475A | gcC | gcT | 3 | 3 | AY.98 | 0.000237 |
S | 475 | A475A | gcC | gcT | 2 | 3 | AY.98.1 | 0.000097 |
S | 475 | A475A | gcC | gcA | 1 | 3 | AY.98.1 | 0.000048 |
S | 475 | A475A | gcC | gcT | 3 | 3 | B.1.1.153 | 0.003286 |
S | 475 | A475A | gcC | gcT | 3 | 3 | B.1.1.176 | 0.001318 |
S | 475 | A475A | gcC | gcT | 2 | 3 | B.1.1.216 | 0.001781 |
S | 475 | A475A | gcC | gcA | 1 | 3 | B.1.1.216 | 0.00089 |
S | 475 | A475A | gcC | gcT | 2 | 3 | B.1.1.25 | 0.001137 |
S | 475 | A475A | gcC | gcA | 1 | 3 | B.1.1.25 | 0.000569 |
S | 475 | A475A | gcC | gcT | 2 | 3 | B.1.1.277 | 0.001517 |
S | 475 | A475A | gcC | gcA | 1 | 3 | B.1.1.277 | 0.000759 |
S | 475 | A475A | gcC | gcT | 2 | 3 | B.1.1.316 | 0.00185 |
S | 475 | A475A | gcC | gcA | 1 | 3 | B.1.1.316 | 0.000925 |
S | 475 | A475A | gcC | gcT | 3 | 3 | B.1.1.41 | 0.018987 |
S | 475 | A475A | gcC | gcA | 3 | 3 | B.1.177.10 | 0.002634 |
S | 475 | A475A | gcC | gcT | 3 | 3 | B.1.177.86 | 0.00055 |
S | 475 | A475A | gcC | gcT | 3 | 3 | B.1.184 | 0.176471 |
S | 475 | A475A | gcC | gcT | 3 | 3 | B.1.240 | 0.000647 |
S | 475 | A475A | gcC | gcT | 3 | 3 | B.1.258.17 | 0.000312 |
S | 475 | A475A | gcC | gcT | 3 | 3 | B.1.36.29 | 0.001552 |
S | 475 | A475A | gcC | gcT | 3 | 3 | B.1.391 | 0.003382 |
S | 475 | A475A | gcC | gcT | 3 | 3 | B.1.597 | 0.013889 |
S | 475 | A475A | gcC | gcT | 3 | 3 | B.1.621.1 | 0.001517 |
S | 475 | A475A | gcC | gcT | 2 | 3 | Q.1 | 0.000253 |
S | 475 | A475A | gcC | gcA | 1 | 3 | Q.1 | 0.000126 |
S | 475 | A475A | gcC | gcT | 3 | 3 | Q.6 | 0.019868 |
S | 475 | A475A | gcC | gcT | 3 | 3 | R.1 | 0.00027 |
S | 475 | A475A | gcC | gcT | 2 | 2 | AE.1 | 0.022727 |
S | 475 | A475A | gcC | gcT | 2 | 2 | AY.110 | 0.000225 |
S | 475 | A475A | gcC | gcT | 2 | 2 | AY.16 | 0.000759 |
S | 475 | A475A | gcC | gcT | 2 | 2 | AY.23 | 0.000139 |
S | 475 | A475A | gcC | gcT | 2 | 2 | AY.45 | 0.000243 |
S | 475 | A475A | gcC | gcT | 2 | 2 | AY.59 | 0.001059 |
S | 475 | A475A | gcC | gcT | 2 | 2 | AY.61 | 0.00021 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.1.174 | 0.006757 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.1.348 | 0.001592 |
S | 475 | A475A | gcC | gcA | 2 | 2 | B.1.1.50 | 0.001358 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.1.63 | 0.000772 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.128 | 0.001271 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.139 | 0.001466 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.177.35 | 0.001382 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.177.55 | 0.004662 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.177.57 | 0.000562 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.199 | 0.008264 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.206 | 0.001631 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.222 | 0.003384 |
S | 475 | A475A | gcC | gcG | 1 | 2 | B.1.258.4 | 0.003448 |
S | 475 | A475A | gcC | gcT | 1 | 2 | B.1.258.4 | 0.003448 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.36.17 | 0.000988 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.395 | 0.014085 |
S | 475 | A475A | gcC | gcA | 2 | 2 | B.1.427 | 0.000101 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.428 | 0.002041 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.509 | 0.001732 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.523 | 0.004902 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.530 | 0.014286 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.551 | 0.002581 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.558 | 0.009132 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.576 | 0.001813 |
S | 475 | A475A | gcC | gcT | 2 | 2 | B.1.600 | 0.011696 |
S | 475 | A475A | gcC | gcA | 1 | 2 | B.3 | 0.000831 |
S | 475 | A475A | gcC | gcT | 1 | 2 | B.3 | 0.000831 |
S | 475 | A475A | gcC | gcT | 2 | 2 | C.1.2 | 0.008511 |
S | 475 | A475A | gcC | gcT | 2 | 2 | P.1.2 | 0.002312 |
S | 475 | A475A | gcC | gcT | 1 | 1 | A.2.5 | 0.000499 |
S | 475 | A475A | gcC | gcT | 1 | 1 | A.27 | 0.001656 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AD.2 | 0.000219 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AF.1 | 0.037037 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AU.3 | 0.00211 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.108 | 0.001103 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.14 | 0.000088 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.24 | 0.000431 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.33 | 0.000067 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.36 | 0.000148 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.39.1 | 0.00004 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.4.2 | 0.000022 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.47 | 0.000031 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.5.3 | 0.000337 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.53 | 0.000288 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.54 | 0.000095 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.65 | 0.000533 |
S | 475 | A475A | gcC | gcA | 1 | 1 | AY.7.1 | 0.000113 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.70 | 0.000209 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.74 | 0.000116 |
S | 475 | A475A | gcC | gcT | 1 | 1 | AY.90 | 0.000684 |
S | 475 | A475A | gcC | gcA | 1 | 1 | B.1.1.1 | 0.000327 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.10 | 0.001115 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.141 | 0.002012 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.170 | 0.001247 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.196 | 0.005714 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.207 | 0.001182 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.237 | 0.005405 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.251 | 0.007937 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.253 | 0.002506 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.273 | 0.006757 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.274 | 0.005051 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.282 | 0.011628 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.286 | 0.002899 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.291 | 0.000742 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.297 | 0.002237 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.302 | 0.002075 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.306 | 0.000438 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.312 | 0.001912 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.335 | 0.012987 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.366 | 0.015873 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.369 | 0.000446 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.404 | 0.015873 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.412 | 0.007634 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.432 | 0.001266 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.437 | 0.010417 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.44 | 0.00241 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.46 | 0.004367 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.464 | 0.001473 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.486 | 0.001577 |
S | 475 | A475A | gcC | gcA | 1 | 1 | B.1.1.512 | 0.028571 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.523 | 0.001563 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.1.57 | 0.011494 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.113 | 0.015625 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.160.15 | 0.00495 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.173 | 0.026316 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.177.15 | 0.000631 |
S | 475 | A475A | gcC | gcA | 1 | 1 | B.1.177.19 | 0.001431 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.177.4 | 0.000211 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.177.40 | 0.005155 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.177.60 | 0.000218 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.177.69 | 0.001484 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.177.81 | 0.000189 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.182 | 0.007246 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.214.2 | 0.0006 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.219 | 0.009434 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.23 | 0.006061 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.237 | 0.004975 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.240.2 | 0.030303 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.258.11 | 0.000396 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.258.3 | 0.001675 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.258.7 | 0.001912 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.302 | 0.013333 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.351.5 | 0.0006 |
S | 475 | A475A | gcC | gcA | 1 | 1 | B.1.36.10 | 0.004785 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.36.9 | 0.003215 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.361 | 0.001289 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.362 | 0.001541 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.389 | 0.001002 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.397 | 0.004854 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.398 | 0.002976 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.402 | 0.009804 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.421 | 0.007463 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.433 | 0.003195 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.436 | 0.001029 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.443 | 0.004673 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.446 | 0.02 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.456 | 0.003268 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.467 | 0.04 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.470 | 0.001404 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.496 | 0.125 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.499 | 0.00105 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.513 | 0.013889 |
S | 475 | A475A | gcC | gcA | 1 | 1 | B.1.517.1 | 0.005263 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.524 | 0.001406 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.546 | 0.003704 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.565 | 0.00081 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.586 | 0.010989 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.590 | 0.004545 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.612 | 0.002653 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.623 | 0.000536 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.625 | 0.002353 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.628 | 0.000352 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.632 | 0.006711 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.1.91 | 0.002075 |
S | 475 | A475A | gcC | gcT | 1 | 1 | B.23 | 0.002924 |
S | 475 | A475A | gcC | gcT | 1 | 1 | C.16 | 0.00106 |
S | 475 | A475A | gcC | gcT | 1 | 1 | C.26 | 0.007353 |
S | 475 | A475A | gcC | gcT | 1 | 1 | C.4 | 0.01 |
S | 475 | A475A | gcC | gcT | 1 | 1 | L.4 | 0.05 |
S | 475 | A475A | gcC | gcT | 1 | 1 | M.1 | 0.023256 |
S | 475 | A475A | gcC | gcT | 1 | 1 | N.1 | 0.016949 |
S | 475 | A475A | gcC | gcT | 1 | 1 | N.3 | 0.005814 |
S | 475 | A475A | gcC | gcT | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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