CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = A262S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S262A262SnonsynGctTct20915208960.99909222346-22348
S262A262SnonsynGcTTcG20915180.00086062622346-22348
S262A262SnonsynGcTTcA2091510.000047812622346-22348

Details of the mutation A262S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S262A262SGctTct2089620915All0.003997
S262A262SGcTTcG1820915All0.000003
S262A262SGcTTcA120915All0
S262A262SGctTct55555555B.1.1770.073146
S262A262SGctTct26412641AY.410.776308
S262A262SGctTct19581958B.1.177.820.934606
S262A262SGctTct13251325B.1.177.870.964338
S262A262SGctTct11251125AY.670.522284
S262A262SGctTct10591059B.1.177.460.972452
S262A262SGctTct10431043B.1.177.100.915716
S262A262SGctTct686686B.1.177.90.913449
S262A262SGctTct645645B.1.177.830.955556
S262A262SGctTct593593AY.40.000923
S262A262SGctTct461461AY.430.002042
S262A262SGctTct414417B.1.1.70.000371
S262A262SGcTTcG3417B.1.1.70.000003
S262A262SGctTct390391B.1.617.20.001469
S262A262SGcTTcG1391B.1.617.20.000004
S262A262SGctTct229229B.1.177.300.575377
S262A262SGctTct161161B.1.20.001418
S262A262SGctTct154154B.1.1600.004803
S262A262SGctTct139147B.10.001273
S262A262SGcTTcG7147B.10.000064
S262A262SGcTTcA1147B.10.000009
S262A262SGctTct144144AY.1020.003818
S262A262SGctTct141141B.1.177.840.94
S262A262SGctTct126126AY.390.003114
S262A262SGctTct103103AY.1200.003829
S262A262SGctTct9797P.1.20.112139
S262A262SGctTct8990B.1.10.001615
S262A262SGcTTcG190B.1.10.000018
S262A262SGctTct9090C.370.010446
S262A262SGctTct8080AY.98.10.003874
S262A262SGctTct7979B.1.177.880.975309
S262A262SGctTct5959AY.440.000359
S262A262SGctTct5858P.10.000914
S262A262SGctTct4848B.1.6040.827586
S262A262SGctTct4747AY.4.30.039562
S262A262SGctTct4444AY.30.000438
S262A262SGctTct3939AY.1030.000242
S262A262SGctTct3333AY.250.000198
S262A262SGctTct3232AY.290.000505
S262A262SGctTct2929B.1.2430.002018
S262A262SGctTct2828B.1.80.055227
S262A262SGctTct2525P.1.170.004044
S262A262SGctTct2424AY.200.000933
S262A262SGctTct2424B.1.2340.003167
S262A262SGctTct2121AY.4.20.000455
S262A262SGctTct2121B.1.177.890.512195
S262A262SGctTct2020B.1.5260.00047
S262A262SGctTct1919B.1.177.690.02819
S262A262SGctTct1819B.1.360.002626
S262A262SGcTTcG119B.1.360.000146
S262A262SGctTct1818AY.120.005689
S262A262SGctTct1818AY.330.001202
S262A262SGctTct1818B.1.177.160.01196
S262A262SGctTct1717AY.50.000351
S262A262SGctTct1717B.1.4290.0004
S262A262SGctTct1616AY.260.000453
S262A262SGctTct1616B.1.1.390.008155
S262A262SGctTct1515AY.1210.00203
S262A262SGctTct1515AY.300.005936
S262A262SGctTct1515AY.370.004741
S262A262SGctTct1313AY.1190.000459
S262A262SGctTct1313B.1.5950.003392
S262A262SGctTct1212B.1.3510.000357
S262A262SGctTct1111B.1.1.3120.021033
S262A262SGctTct1111B.1.2580.000732
S262A262SGctTct1010AY.740.001156
S262A262SGctTct1010B.1.1260.012755
S262A262SGctTct1010B.1.258.170.00104
S262A262SGctTct1010B.1.3690.002852
S262A262SGctTct1010B.1.6210.000885
S262A262SGctTct1010P.1.140.000478
S262A262SGctTct99AY.1180.000564
S262A262SGctTct99AY.620.003922
S262A262SGctTct88AY.116.10.002491
S262A262SGctTct88AY.240.003448
S262A262SGctTct88AY.420.000322
S262A262SGctTct88AY.980.000632
S262A262SGctTct88B.1.1.10.002614
S262A262SGctTct88B.1.1.2630.012461
S262A262SGctTct88B.1.1.3180.002414
S262A262SGctTct88B.1.160.230.038647
S262A262SGctTct88B.1.177.330.013158
S262A262SGctTct88B.1.177.860.001468
S262A262SGctTct88P.20.001493
S262A262SGctTct77AY.1060.002344
S262A262SGctTct77AY.9.20.000257
S262A262SGctTct77AY.99.20.000645
S262A262SGctTct77B.1.2210.000497
S262A262SGctTct77B.1.4080.02583
S262A262SGctTct77B.1.6370.000512
S262A262SGctTct77L.10.013333
S262A262SGctTct66AY.750.000336
S262A262SGctTct66AY.940.002656
S262A262SGctTct66B.1.177.230.019417
S262A262SGctTct66B.1.177.80.004515
S262A262SGctTct66B.1.36.170.002964
S262A262SGctTct66B.1.3660.029268
S262A262SGctTct66B.1.4270.000303
S262A262SGctTct55AY.470.000156
S262A262SGctTct55AY.540.000477
S262A262SGctTct55B.1.1.1350.023474
S262A262SGctTct55B.1.1.5190.000199
S262A262SGctTct55B.1.3240.008026
S262A262SGctTct55B.1.36.290.002587
S262A262SGctTct55B.1.5960.000436
S262A262SGctTct55B.1.6280.001762
S262A262SGctTct55C.360.004554
S262A262SGctTct55P.1.150.001162
S262A262SGctTct44AY.1000.000184
S262A262SGctTct44AY.1170.000338
S262A262SGctTct44AY.460.000416
S262A262SGctTct44AY.520.003257
S262A262SGctTct44AY.610.000419
S262A262SGctTct44AY.900.002738
S262A262SGctTct44B.1.1.2220.000816
S262A262SGctTct44B.1.1.3480.003185
S262A262SGctTct44B.1.1.700.001364
S262A262SGctTct44B.1.1.890.024242
S262A262SGctTct44B.1.177.440.002076
S262A262SGctTct44B.1.177.650.002661
S262A262SGctTct44B.1.3670.00317
S262A262SGctTct44B.1.3820.035714
S262A262SGctTct44B.1.6180.016129
S262A262SGctTct44B.400.001457
S262A262SGctTct33AY.140.000264
S262A262SGctTct33AY.320.001597
S262A262SGctTct33AY.450.000365
S262A262SGctTct33AY.5.30.001012
S262A262SGctTct33AY.60.000123
S262A262SGctTct33AY.90.000203
S262A262SGctTct33B.1.160.300.008929
S262A262SGctTct33B.1.177.170.002463
S262A262SGctTct33B.1.177.630.008108
S262A262SGctTct33B.1.177.730.001699
S262A262SGctTct33B.1.466.20.001174
S262A262SGctTct33B.1.4970.000944
S262A262SGctTct33B.1.5250.000339
S262A262SGctTct33B.1.617.10.000387
S262A262SGctTct22A0.000774
S262A262SGctTct22A.2.50.000998
S262A262SGctTct22AU.20.004843
S262A262SGctTct22AY.1100.000225
S262A262SGctTct22AY.130.000322
S262A262SGctTct22AY.190.002281
S262A262SGctTct22AY.34.10.00102
S262A262SGctTct22AY.39.10.000079
S262A262SGctTct22AY.400.001929
S262A262SGctTct22AY.46.20.001271
S262A262SGctTct22AY.46.40.000329
S262A262SGctTct22AY.46.60.000144
S262A262SGctTct22AY.550.001835
S262A262SGctTct22AY.560.00321
S262A262SGctTct22AY.680.000547
S262A262SGctTct22AY.710.00095
S262A262SGctTct22AY.75.10.000361
S262A262SGctTct22AY.840.000875
S262A262SGctTct22B.1.1.2000.014925
S262A262SGctTct22B.1.1.3060.000877
S262A262SGctTct22B.1.1.370.000386
S262A262SGctTct22B.1.1.500.001358
S262A262SGctTct22B.1.177.310.022989
S262A262SGctTct22B.1.177.520.003515
S262A262SGctTct22B.1.177.560.001335
S262A262SGcTTcG22B.1.2600.006689
S262A262SGctTct22B.1.351.20.000605
S262A262SGctTct22B.1.3960.001411
S262A262SGcTTcG22B.1.4560.006536
S262A262SGctTct22B.1.5370.04
S262A262SGctTct22B.1.6270.00404
S262A262SGctTct22C.36.30.001134
S262A262SGctTct22D.20.00015
S262A262SGctTct22Q.80.00033
S262A262SGctTct11A.2.40.003367
S262A262SGctTct11A.23.10.000704
S262A262SGctTct11A.270.001656
S262A262SGctTct11A.60.005128
S262A262SGctTct11AD.20.000219
S262A262SGctTct11AL.10.012987
S262A262SGctTct11AY.1070.000466
S262A262SGctTct11AY.1130.000142
S262A262SGctTct11AY.1140.000231
S262A262SGctTct11AY.270.000065
S262A262SGctTct11AY.360.000148
S262A262SGctTct11AY.380.000499
S262A262SGctTct11AY.4.2.10.000149
S262A262SGctTct11AY.4.50.000107
S262A262SGctTct11AY.5.40.000277
S262A262SGctTct11AY.580.000907
S262A262SGctTct11AY.650.000533
S262A262SGctTct11AY.7.10.000113
S262A262SGctTct11AY.7.20.000559
S262A262SGctTct11AY.780.001541
S262A262SGctTct11AY.880.000884
S262A262SGctTct11AY.890.004902
S262A262SGctTct11AY.920.000287
S262A262SGctTct11B.1.1.1120.058824
S262A262SGctTct11B.1.1.1410.002012
S262A262SGctTct11B.1.1.1940.00495
S262A262SGctTct11B.1.1.2140.000055
S262A262SGctTct11B.1.1.2160.00089
S262A262SGctTct11B.1.1.2360.006897
S262A262SGctTct11B.1.1.2650.003155
S262A262SGctTct11B.1.1.2790.001121
S262A262SGctTct11B.1.1.2840.000107
S262A262SGctTct11B.1.1.2980.000862
S262A262SGctTct11B.1.1.310.066667
S262A262SGctTct11B.1.1.3170.000412
S262A262SGctTct11B.1.1.3260.001761
S262A262SGctTct11B.1.1.330.000421
S262A262SGctTct11B.1.1.4160.000905
S262A262SGctTct11B.1.1.5230.001563
S262A262SGctTct11B.1.1.610.008772
S262A262SGctTct11B.1.110.30.000718
S262A262SGctTct11B.1.1130.015625
S262A262SGctTct11B.1.160.140.002119
S262A262SGctTct11B.1.160.260.002421
S262A262SGctTct11B.1.160.280.002924
S262A262SGctTct11B.1.1670.007812
S262A262SGctTct11B.1.177.120.000152
S262A262SGctTct11B.1.177.210.000076
S262A262SGctTct11B.1.177.350.000691
S262A262SGctTct11B.1.177.40.000211
S262A262SGctTct11B.1.177.400.005155
S262A262SGctTct11B.1.177.430.001477
S262A262SGctTct11B.1.177.600.000218
S262A262SGctTct11B.1.177.720.00339
S262A262SGctTct11B.1.177.750.001041
S262A262SGctTct11B.1.2140.003663
S262A262SGctTct11B.1.3110.000275
S262A262SGctTct11B.1.3490.000715
S262A262SGctTct11B.1.36.160.001425
S262A262SGctTct11B.1.36.360.000602
S262A262SGctTct11B.1.3980.002976
S262A262SGctTct11B.1.4590.004082
S262A262SGctTct11B.1.4680.005714
S262A262SGctTct11B.1.4730.019231
S262A262SGctTct11B.1.5270.003704
S262A262SGctTct11B.1.5400.009709
S262A262SGcTTcG11B.1.6090.000479
S262A262SGctTct11B.1.6360.006711
S262A262SGctTct11B.410.008
S262A262SGctTct11C.100.25
S262A262SGctTct11C.37.10.002618
S262A262SGctTct11C.390.018868
S262A262SGctTct11M.30.076923
S262A262SGctTct11N.30.005814
S262A262SGctTct11N.40.004255
S262A262SGctTct11P.1.10.000318
S262A262SGctTct11P.1.100.000269
S262A262SGctTct11P.1.160.000374
S262A262SGctTct11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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