CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = A243del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S243A243deldelGCT---4047240472122289-22291

Details of the mutation A243del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S243A243delGCT---4047240472All0.007741
S243A243delGCT---3013130131B.1.3510.89569
S243A243delGCT---31513151B.1.351.20.953404
S243A243delGCT---10311031B.1.351.30.903593
S243A243delGCT---999999B.1.6200.945128
S243A243delGCT---730730AY.40.001136
S243A243delGCT---649649B.1.1.70.000581
S243A243delGCT---619619B.1.351.50.371103
S243A243delGCT---371371P.30.591707
S243A243delGCT---337337B.10.003087
S243A243delGCT---219219C.1.20.931915
S243A243delGCT---180180B.1.617.20.000678
S243A243delGCT---176176B.1.6300.921466
S243A243delGCT---109109AY.440.000663
S243A243delGCT---9595AY.4.20.00206
S243A243delGCT---9090AY.430.000399
S243A243delGCT---8383AY.250.000499
S243A243delGCT---7676B.1.10.001379
S243A243delGCT---7272AY.1030.000447
S243A243delGCT---6262AY.30.000617
S243A243delGCT---5454P.10.000851
S243A243delGCT---5050AY.1200.001859
S243A243delGCT---4848B.1.20.000423
S243A243delGCT---4141B.1.1770.00054
S243A243delGCT---3939AY.290.000615
S243A243delGCT---3939B.1.4270.001969
S243A243delGCT---3838B.1.5260.000893
S243A243delGCT---3737B.1.1600.001154
S243A243delGCT---2727AY.1190.000953
S243A243delGCT---2323B.1.4290.000541
S243A243delGCT---2020AY.360.002964
S243A243delGCT---1919AY.690.003547
S243A243delGCT---1818AY.1020.000477
S243A243delGCT---1818AY.390.000445
S243A243delGCT---1818B.1.5250.002037
S243A243delGCT---1818C.36.3.10.048913
S243A243delGCT---1717B.1.6360.114094
S243A243delGCT---1616AY.200.000622
S243A243delGCT---1616AY.470.000498
S243A243delGCT---1515AY.260.000425
S243A243delGCT---1414AY.460.001457
S243A243delGCT---1313B.1.1.2970.029083
S243A243delGCT---1313B.1.177.70.002143
S243A243delGCT---1313B.1.177.860.002385
S243A243delGCT---1313B.1.214.20.007794
S243A243delGCT---1313P.1.150.00302
S243A243delGCT---1212AY.50.000248
S243A243delGCT---1212B0.001534
S243A243delGCT---1111AY.330.000735
S243A243delGCT---1111B.1.5960.000959
S243A243delGCT---1111C.370.001277
S243A243delGCT---1010AY.230.000697
S243A243delGCT---1010AY.3.10.000853
S243A243delGCT---1010AY.99.20.000922
S243A243delGCT---99AY.450.001095
S243A243delGCT---99AY.46.60.00065
S243A243delGCT---99AY.750.000504
S243A243delGCT---99AY.9.20.000331
S243A243delGCT---99B.1.5540.039648
S243A243delGCT---88AY.1000.000368
S243A243delGCT---88B.1.177.730.00453
S243A243delGCT---88B.1.3690.002282
S243A243delGCT---88B.1.5950.002088
S243A243delGCT---88P.1.40.007812
S243A243delGCT---77AY.560.011236
S243A243delGCT---77AY.610.000733
S243A243delGCT---77AY.650.003731
S243A243delGCT---77AY.98.10.000339
S243A243delGCT---77B.1.1.5190.000278
S243A243delGCT---77B.1.2580.000466
S243A243delGCT---77B.1.6210.00062
S243A243delGCT---77Q.10.000884
S243A243delGCT---66AY.340.000582
S243A243delGCT---66AY.740.000694
S243A243delGCT---66AY.75.10.001082
S243A243delGCT---66B.1.1.4320.007595
S243A243delGCT---55AY.1010.002452
S243A243delGCT---55AY.1130.000712
S243A243delGCT---55AY.420.000201
S243A243delGCT---55AY.46.40.000823
S243A243delGCT---55AY.5.30.001687
S243A243delGCT---55AY.9.10.000419
S243A243delGCT---55B.1.2210.000355
S243A243delGCT---55B.1.4090.003906
S243A243delGCT---44AY.1180.000251
S243A243delGCT---44AY.130.000644
S243A243delGCT---44AY.140.000352
S243A243delGCT---44AY.540.000381
S243A243delGCT---44AY.950.003044
S243A243delGCT---44B.1.1.3180.001207
S243A243delGCT---44B.1.1.3890.024242
S243A243delGCT---44B.1.177.810.000757
S243A243delGCT---44B.1.360.000584
S243A243delGCT---44B.1.6090.001918
S243A243delGCT---44D.20.0003
S243A243delGCT---44P.1.10.001271
S243A243delGCT---44P.50.054795
S243A243delGCT---44Q.20.002454
S243A243delGCT---44Q.80.00066
S243A243delGCT---33A0.001161
S243A243delGCT---33AY.10.001187
S243A243delGCT---33AY.1060.001005
S243A243delGCT---33AY.116.10.000934
S243A243delGCT---33AY.1170.000254
S243A243delGCT---33AY.270.000194
S243A243delGCT---33AY.320.001597
S243A243delGCT---33AY.380.001498
S243A243delGCT---33AY.4.50.000322
S243A243delGCT---33AY.5.40.00083
S243A243delGCT---33AY.60.000123
S243A243delGCT---33AY.700.000626
S243A243delGCT---33B.1.1.500.002037
S243A243delGCT---33B.1.1700.012931
S243A243delGCT---33B.1.177.160.001993
S243A243delGCT---33B.1.177.600.000655
S243A243delGCT---33B.1.2400.000647
S243A243delGCT---33B.1.4160.003807
S243A243delGCT---33B.1.6370.000219
S243A243delGCT---33C.160.003181
S243A243delGCT---33P.1.140.000143
S243A243delGCT---33Q.30.000435
S243A243delGCT---220.111111
S243A243delGCT---22A.20.001324
S243A243delGCT---22AB.10.016393
S243A243delGCT---22AY.1050.001286
S243A243delGCT---22AY.1140.000462
S243A243delGCT---22AY.300.000791
S243A243delGCT---22AY.370.000632
S243A243delGCT---22AY.4.40.000818
S243A243delGCT---22AY.630.000774
S243A243delGCT---22AY.70.000392
S243A243delGCT---22AY.980.000158
S243A243delGCT---22B.1.1.2140.000111
S243A243delGCT---22B.1.1.2220.000408
S243A243delGCT---22B.1.1.280.000622
S243A243delGCT---22B.1.1.2940.002532
S243A243delGCT---22B.1.1.3750.02381
S243A243delGCT---22B.1.1.390.001019
S243A243delGCT---22B.1.1.5070.017391
S243A243delGCT---22B.1.1.5240.041667
S243A243delGCT---22B.1.1.5280.009615
S243A243delGCT---22B.1.1.950.039216
S243A243delGCT---22B.1.177.120.000303
S243A243delGCT---22B.1.177.20.009091
S243A243delGCT---22B.1.177.310.022989
S243A243delGCT---22B.1.177.540.001213
S243A243delGCT---22B.1.177.870.001456
S243A243delGCT---22B.1.2430.000139
S243A243delGCT---22B.1.258.110.000793
S243A243delGCT---22B.1.258.140.001961
S243A243delGCT---22B.1.258.170.000208
S243A243delGCT---22B.1.3320.006993
S243A243delGCT---22B.1.3360.004878
S243A243delGCT---22B.1.351.10.076923
S243A243delGCT---22B.1.4000.000858
S243A243delGCT---22B.1.4040.002604
S243A243delGCT---22B.1.5170.000854
S243A243delGCT---22B.1.5680.002222
S243A243delGCT---22B.1.5760.001813
S243A243delGCT---22B.1.5990.007299
S243A243delGCT---22B.1.617.10.000258
S243A243delGCT---22B.1.6190.001742
S243A243delGCT---22B.1.6230.001073
S243A243delGCT---22C.36.30.001134
S243A243delGCT---22P.1.120.000968
S243A243delGCT---22P.1.160.000748
S243A243delGCT---22P.1.60.003891
S243A243delGCT---22Q.40.00091
S243A243delGCT---11A.2.50.000499
S243A243delGCT---11A.230.010526
S243A243delGCT---11A.23.10.000704
S243A243delGCT---11A.270.001656
S243A243delGCT---11A.290.005319
S243A243delGCT---11A.30.002096
S243A243delGCT---11AA.10.007246
S243A243delGCT---11AD.20.000219
S243A243delGCT---11AU.30.00211
S243A243delGCT---11AY.1110.000183
S243A243delGCT---11AY.1160.000287
S243A243delGCT---11AY.120.20.001285
S243A243delGCT---11AY.1210.000135
S243A243delGCT---11AY.160.00038
S243A243delGCT---11AY.20.000356
S243A243delGCT---11AY.29.10.000221
S243A243delGCT---11AY.350.000233
S243A243delGCT---11AY.39.10.00004
S243A243delGCT---11AY.4.2.10.000149
S243A243delGCT---11AY.400.000964
S243A243delGCT---11AY.46.10.001027
S243A243delGCT---11AY.500.000799
S243A243delGCT---11AY.510.000909
S243A243delGCT---11AY.580.000907
S243A243delGCT---11AY.590.00053
S243A243delGCT---11AY.640.000595
S243A243delGCT---11AY.670.000464
S243A243delGCT---11AY.7.20.000559
S243A243delGCT---11AY.730.000665
S243A243delGCT---11AY.780.001541
S243A243delGCT---11AY.820.001357
S243A243delGCT---11AY.840.000437
S243A243delGCT---11AY.880.000884
S243A243delGCT---11AY.890.004902
S243A243delGCT---11AY.900.000684
S243A243delGCT---11AY.910.00073
S243A243delGCT---11AY.920.000287
S243A243delGCT---11B.1.1.10.000327
S243A243delGCT---11B.1.1.1530.001095
S243A243delGCT---11B.1.1.1590.004673
S243A243delGCT---11B.1.1.1650.015385
S243A243delGCT---11B.1.1.1920.002309
S243A243delGCT---11B.1.1.2170.003636
S243A243delGCT---11B.1.1.2770.000759
S243A243delGCT---11B.1.1.2800.003086
S243A243delGCT---11B.1.1.2840.000107
S243A243delGCT---11B.1.1.2980.000862
S243A243delGCT---11B.1.1.3060.000438
S243A243delGCT---11B.1.1.3110.000358
S243A243delGCT---11B.1.1.3220.008772
S243A243delGCT---11B.1.1.3230.014085
S243A243delGCT---11B.1.1.330.000421
S243A243delGCT---11B.1.1.3520.03125
S243A243delGCT---11B.1.1.3560.008547
S243A243delGCT---11B.1.1.3690.000446
S243A243delGCT---11B.1.1.370.000193
S243A243delGCT---11B.1.1.3720.000689
S243A243delGCT---11B.1.1.3740.002375
S243A243delGCT---11B.1.1.4020.011111
S243A243delGCT---11B.1.1.4090.002833
S243A243delGCT---11B.1.1.4200.001006
S243A243delGCT---11B.1.1.440.00241
S243A243delGCT---11B.1.1.4480.002033
S243A243delGCT---11B.1.1.4640.001473
S243A243delGCT---11B.1.1.4860.001577
S243A243delGCT---11B.1.1.5260.003546
S243A243delGCT---11B.1.1.530.013699
S243A243delGCT---11B.1.110.30.000718
S243A243delGCT---11B.1.1110.001175
S243A243delGCT---11B.1.1390.000733
S243A243delGCT---11B.1.1470.000756
S243A243delGCT---11B.1.160.290.004219
S243A243delGCT---11B.1.160.70.002079
S243A243delGCT---11B.1.177.170.000821
S243A243delGCT---11B.1.177.180.00116
S243A243delGCT---11B.1.177.210.000076
S243A243delGCT---11B.1.177.240.001295
S243A243delGCT---11B.1.177.40.000211
S243A243delGCT---11B.1.177.510.004566
S243A243delGCT---11B.1.177.690.001484
S243A243delGCT---11B.1.177.770.000726
S243A243delGCT---11B.1.177.820.000477
S243A243delGCT---11B.1.177.850.005435
S243A243delGCT---11B.1.2130.014925
S243A243delGCT---11B.1.220.001318
S243A243delGCT---11B.1.2200.01087
S243A243delGCT---11B.1.2340.000132
S243A243delGCT---11B.1.2370.004975
S243A243delGCT---11B.1.2410.000812
S243A243delGCT---11B.1.258.30.001675
S243A243delGCT---11B.1.36.170.000494
S243A243delGCT---11B.1.36.200.016949
S243A243delGCT---11B.1.36.370.002778
S243A243delGCT---11B.1.3670.000792
S243A243delGCT---11B.1.3750.00082
S243A243delGCT---11B.1.3890.001002
S243A243delGCT---11B.1.3990.001934
S243A243delGCT---11B.1.416.10.001563
S243A243delGCT---11B.1.4170.028571
S243A243delGCT---11B.1.4240.008065
S243A243delGCT---11B.1.4330.003195
S243A243delGCT---11B.1.438.10.000107
S243A243delGCT---11B.1.4390.005917
S243A243delGCT---11B.1.4410.009615
S243A243delGCT---11B.1.4450.011765
S243A243delGCT---11B.1.4530.003236
S243A243delGCT---11B.1.466.20.000391
S243A243delGCT---11B.1.4680.005714
S243A243delGCT---11B.1.4700.001404
S243A243delGCT---11B.1.4970.000315
S243A243delGCT---11B.1.4990.00105
S243A243delGCT---11B.1.5510.00129
S243A243delGCT---11B.1.5610.000397
S243A243delGCT---11B.1.5820.000491
S243A243delGCT---11B.1.5890.007576
S243A243delGCT---11B.1.596.10.009346
S243A243delGCT---11B.1.6040.017241
S243A243delGCT---11B.1.6060.006024
S243A243delGCT---11B.1.621.10.000506
S243A243delGCT---11B.1.80.001972
S243A243delGCT---11B.400.000364
S243A243delGCT---11B.60.00091
S243A243delGCT---11C.10.002392
S243A243delGCT---11C.1.10.076923
S243A243delGCT---11C.350.000774
S243A243delGCT---11C.360.000911
S243A243delGCT---11N.50.001767
S243A243delGCT---11P.1.20.001156
S243A243delGCT---11P.20.000187
S243A243delGCT---11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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