CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : Mut = A222V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	222	A222V		nonsyn	gCt	gTt	455872	455853	0.999958	22226-22228
S	222	A222V		nonsyn	gCT	gTA	455872	16	0.0000350976	22226-22228
S	222	A222V		nonsyn	gCT	gTC	455872	2	0.0000043872	22226-22228
S	222	A222V		nonsyn	gCT	gTG	455872	1	0.0000021936	22226-22228

Details of the mutation A222V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	222	A222V	gCt	gTt	455853	455872	All	0.087187
S	222	A222V	gCT	gTA	16	455872	All	0.000003
S	222	A222V	gCT	gTC	2	455872	All	0
S	222	A222V	gCT	gTG	1	455872	All	0
S	222	A222V	gCt	gTt	74496	74496	B.1.177	0.980933
S	222	A222V	gCt	gTt	46048	46049	AY.4.2	0.99872
S	222	A222V	gCT	gTA	1	46049	AY.4.2	0.000022
S	222	A222V	gCt	gTt	33056	33057	AY.26	0.935821
S	222	A222V	gCT	gTC	1	33057	AY.26	0.000028
S	222	A222V	gCt	gTt	29821	29821	AY.47	0.927587
S	222	A222V	gCt	gTt	22389	22389	AY.9.2	0.822339
S	222	A222V	gCt	gTt	15566	15580	AY.75	0.872045
S	222	A222V	gCT	gTA	14	15580	AY.75	0.000784
S	222	A222V	gCt	gTt	15344	15344	AY.27	0.993075
S	222	A222V	gCt	gTt	14154	14154	AY.9	0.956739
S	222	A222V	gCt	gTt	12953	12953	B.1.177.21	0.990518
S	222	A222V	gCt	gTt	11542	11542	AY.9.1	0.966343
S	222	A222V	gCt	gTt	11021	11022	B.1.617.2	0.041499
S	222	A222V	gCT	gTA	1	11022	B.1.617.2	0.000004
S	222	A222V	gCt	gTt	9329	9329	AY.61	0.977473
S	222	A222V	gCt	gTt	7637	7637	AY.74	0.883196
S	222	A222V	gCt	gTt	6537	6537	B.1.177.12	0.991657
S	222	A222V	gCt	gTt	5923	5923	B.1.177.7	0.976426
S	222	A222V	gCt	gTt	5713	5713	AY.4.2.1	0.851162
S	222	A222V	gCt	gTt	5357	5357	B.1.177.86	0.982755
S	222	A222V	gCt	gTt	5204	5204	B.1.177.81	0.985233
S	222	A222V	gCt	gTt	4953	4953	AY.69	0.924585
S	222	A222V	gCt	gTt	4767	4767	AY.75.1	0.859538
S	222	A222V	gCt	gTt	4714	4714	B.1.177.4	0.994935
S	222	A222V	gCt	gTt	4502	4502	B.1.177.60	0.983399
S	222	A222V	gCt	gTt	4478	4478	AY.70	0.933695
S	222	A222V	gCt	gTt	3544	3544	B.1.177.57	0.995785
S	222	A222V	gCt	gTt	2813	2813	AY.37	0.889064
S	222	A222V	gCt	gTt	2675	2675	AY.2	0.952635
S	222	A222V	gCt	gTt	2663	2663	AY.68	0.72899
S	222	A222V	gCt	gTt	2597	2597	B.1.177.45	0.990088
S	222	A222V	gCt	gTt	2446	2446	AY.63	0.946228
S	222	A222V	gCt	gTt	2157	2157	AY.24	0.929741
S	222	A222V	gCt	gTt	2092	2092	B.1.177.82	0.998568
S	222	A222V	gCt	gTt	1949	1949	AY.71	0.925891
S	222	A222V	gCt	gTt	1878	1878	AY.62	0.818301
S	222	A222V	gCt	gTt	1858	1858	B.1.177.44	0.964193
S	222	A222V	gCt	gTt	1768	1768	AY.67	0.820799
S	222	A222V	gCt	gTt	1640	1640	B.1.177.54	0.994542
S	222	A222V	gCt	gTt	1606	1606	AY.10	0.851086
S	222	A222V	gCt	gTt	1581	1581	B.1.177.15	0.997476
S	222	A222V	gCt	gTt	1550	1550	B.1.1.7	0.001388
S	222	A222V	gCt	gTt	1497	1497	B.1.177.16	0.994684
S	222	A222V	gCt	gTt	1495	1495	B.1.177.65	0.994677
S	222	A222V	gCt	gTt	1479	1479	B.1	0.013547
S	222	A222V	gCt	gTt	1477	1477	B.1.177.56	0.985981
S	222	A222V	gCt	gTt	1459	1459	AY.65	0.777719
S	222	A222V	gCt	gTt	1437	1437	AY.38	0.717424
S	222	A222V	gCt	gTt	1430	1430	B.1.177.35	0.988252
S	222	A222V	gCt	gTt	1392	1392	AY.64	0.828571
S	222	A222V	gCt	gTt	1379	1379	AY.57	0.904856
S	222	A222V	gCt	gTt	1364	1364	AY.59	0.722458
S	222	A222V	gCt	gTt	1364	1364	B.1.177.87	0.992722
S	222	A222V	gCt	gTt	1359	1359	B.1.177.77	0.986928
S	222	A222V	gCt	gTt	1321	1321	B.1.177.8	0.99398
S	222	A222V	gCt	gTt	1246	1246	B.1.177.73	0.705549
S	222	A222V	gCt	gTt	1214	1214	B.1.177.17	0.996716
S	222	A222V	gCt	gTt	1137	1137	AY.4	0.00177
S	222	A222V	gCt	gTt	1132	1132	B.1.177.10	0.993854
S	222	A222V	gCt	gTt	1077	1077	B.1.177.46	0.988981
S	222	A222V	gCt	gTt	1066	1066	B.1.177.42	0.953488
S	222	A222V	gCt	gTt	1000	1000	B.1.177.6	0.976562
S	222	A222V	gCt	gTt	972	972	AY.60	0.91182
S	222	A222V	gCt	gTt	955	955	B.1.177.75	0.993757
S	222	A222V	gCt	gTt	860	860	AY.73	0.572189
S	222	A222V	gCt	gTt	855	855	B.1.177.18	0.991879
S	222	A222V	gCt	gTt	842	842	AY.66	0.900535
S	222	A222V	gCt	gTt	825	825	B.1.177.62	0.983313
S	222	A222V	gCt	gTt	798	798	B.1.177.5	0.991304
S	222	A222V	gCt	gTt	765	765	B.1.177.24	0.990933
S	222	A222V	gCt	gTt	748	748	B.1.177.58	0.996005
S	222	A222V	gCt	gTt	748	748	B.1.177.9	0.996005
S	222	A222V	gCt	gTt	737	737	AY.58	0.668784
S	222	A222V	gCt	gTt	730	730	B.1.177.32	0.985155
S	222	A222V	gCt	gTt	730	730	W.4	0.986486
S	222	A222V	gCt	gTt	699	699	AY.72	0.95102
S	222	A222V	gCt	gTt	694	694	B.1.177.19	0.992847
S	222	A222V	gCt	gTt	671	671	B.1.177.69	0.995549
S	222	A222V	gCt	gTt	669	669	AY.11	0.895582
S	222	A222V	gCt	gTt	667	667	B.1.177.83	0.988148
S	222	A222V	gCt	gTt	657	657	B.1.177.20	0.996965
S	222	A222V	gCt	gTt	634	634	B.1.177.43	0.936484
S	222	A222V	gCt	gTt	629	629	AY.44	0.003829
S	222	A222V	gCt	gTt	599	599	B.1.177.33	0.985197
S	222	A222V	gCt	gTt	585	585	B.1.177.11	0.993209
S	222	A222V	gCt	gTt	565	565	B.1.177.52	0.99297
S	222	A222V	gCt	gTt	556	556	B.1.36.31	0.97373
S	222	A222V	gCt	gTt	522	522	B.1.177.80	0.998088
S	222	A222V	gCt	gTt	513	513	B.1.2	0.004517
S	222	A222V	gCt	gTt	497	497	AY.9.2.1	0.982213
S	222	A222V	gCt	gTt	490	490	AY.28	0.926276
S	222	A222V	gCt	gTt	478	478	AY.55	0.438532
S	222	A222V	gCt	gTt	448	448	B.1.429	0.010541
S	222	A222V	gCt	gTt	427	427	B.1.177.55	0.995338
S	222	A222V	gCt	gTt	425	425	AY.43	0.001883
S	222	A222V	gCt	gTt	425	425	B.1.177.79	0.995316
S	222	A222V	gCt	gTt	411	411	B.1.177.53	0.983254
S	222	A222V	gCt	gTt	400	400	B.1.177.41	1
S	222	A222V	gCt	gTt	399	399	AY.103	0.002477
S	222	A222V	gCt	gTt	399	399	B.1.1.37	0.076953
S	222	A222V	gCt	gTt	398	398	B.1.177.76	0.992519
S	222	A222V	gCt	gTt	395	395	B.1.177.30	0.992462
S	222	A222V	gCt	gTt	381	381	AY.56	0.611557
S	222	A222V	gCt	gTt	367	367	B.1.177.63	0.991892
S	222	A222V	gCt	gTt	362	362	B.1.160	0.01129
S	222	A222V	gCt	gTt	344	344	Z.1	0.99422
S	222	A222V	gCt	gTt	319	319	B.1.177.48	0.996875
S	222	A222V	gCt	gTt	298	298	B.1.177.23	0.964401
S	222	A222V	gCt	gTt	294	294	B.1.177.72	0.99661
S	222	A222V	gCt	gTt	281	281	B.1.1	0.005098
S	222	A222V	gCt	gTt	266	266	AY.13	0.04282
S	222	A222V	gCt	gTt	258	258	U.3	0.996139
S	222	A222V	gCt	gTt	229	229	B.1.1.519	0.009094
S	222	A222V	gCt	gTt	216	216	AY.16.1	0.101504
S	222	A222V	gCt	gTt	216	216	B.1.177.51	0.986301
S	222	A222V	gCt	gTt	207	207	B.1.177.2	0.940909
S	222	A222V	gCt	gTt	199	200	AY.25	0.001197
S	222	A222V	gCT	gTC	1	200	AY.25	0.000006
S	222	A222V	gCt	gTt	195	195	W.2	0.942029
S	222	A222V	gCt	gTt	194	194	B.1.177.50	0.910798
S	222	A222V	gCt	gTt	190	190	B.1.177.40	0.979381
S	222	A222V	gCt	gTt	188	188	W.3	0.989474
S	222	A222V	gCt	gTt	186	186	AY.19	0.212087
S	222	A222V	gCt	gTt	183	183	AY.20	0.007112
S	222	A222V	gCt	gTt	183	183	B.1.177.85	0.994565
S	222	A222V	gCt	gTt	179	179	B.1.630	0.937173
S	222	A222V	gCt	gTt	177	177	R.1	0.015932
S	222	A222V	gCt	gTt	174	174	B.1.351	0.005172
S	222	A222V	gCt	gTt	165	165	B.1.177.70	0.976331
S	222	A222V	gCt	gTt	164	164	B.1.177.14	1
S	222	A222V	gCt	gTt	155	155	B.1.427	0.007827
S	222	A222V	gCt	gTt	147	147	AY.113	0.020931
S	222	A222V	gCt	gTt	145	145	A	0.056115
S	222	A222V	gCt	gTt	145	145	B.1.177.84	0.966667
S	222	A222V	gCt	gTt	144	144	B.1.221	0.010229
S	222	A222V	gCt	gTt	143	143	B.1.177.26	1
S	222	A222V	gCt	gTt	139	139	AZ.1	0.120555
S	222	A222V	gCt	gTt	134	134	AA.1	0.971014
S	222	A222V	gCt	gTt	134	134	B.1.177.28	0.992593
S	222	A222V	gCt	gTt	130	130	B.1.177.3	0.992366
S	222	A222V	gCt	gTt	130	130	B.1.177.67	0.992366
S	222	A222V	gCt	gTt	129	129	AA.2	0.992308
S	222	A222V	gCt	gTt	125	125	AY.39	0.003089
S	222	A222V	gCt	gTt	120	120	B.1.258	0.007986
S	222	A222V	gCt	gTt	115	115	W.1	1
S	222	A222V	gCt	gTt	114	114	U.2	1
S	222	A222V	gCt	gTt	110	110	AA.4	1
S	222	A222V	gCt	gTt	109	109	AA.7	1
S	222	A222V	gCt	gTt	109	109	AY.119	0.003849
S	222	A222V	gCt	gTt	108	108	B.1.160.30	0.321429
S	222	A222V	gCt	gTt	107	107	Q.3	0.015518
S	222	A222V	gCt	gTt	105	105	B.1.177.27	0.990566
S	222	A222V	gCt	gTt	102	102	B.1.177.78	0.990291
S	222	A222V	gCt	gTt	101	101	AY.3	0.001005
S	222	A222V	gCt	gTt	98	98	B.1.177.71	0.989899
S	222	A222V	gCt	gTt	97	97	AY.48	0.045116
S	222	A222V	gCt	gTt	96	96	B.1.1.317	0.039522
S	222	A222V	gCt	gTt	96	96	B.1.526	0.002256
S	222	A222V	gCt	gTt	91	91	AY.102	0.002413
S	222	A222V	gCt	gTt	91	91	B.1.177.38	0.947917
S	222	A222V	gCt	gTt	82	82	AY.54	0.007818
S	222	A222V	gCt	gTt	82	82	B.1.1.28	0.025521
S	222	A222V	gCt	gTt	81	81	B.1.177.88	1
S	222	A222V	gCt	gTt	79	79	AW.1	0.240854
S	222	A222V	gCt	gTt	78	78	U.1	1
S	222	A222V	gCt	gTt	78	78	Y.1	1
S	222	A222V	gCt	gTt	75	75	B.1.177.47	0.974026
S	222	A222V	gCt	gTt	74	74	AY.121	0.010014
S	222	A222V	gCt	gTt	72	72	AY.98.1	0.003487
S	222	A222V	gCt	gTt	66	66	B.1.177.25	0.985075
S	222	A222V	gCt	gTt	65	65	B.1.177.39	1
S	222	A222V	gCt	gTt	65	65	B.1.177.68	0.984848
S	222	A222V	gCt	gTt	65	65	B.1.177.74	0.984848
S	222	A222V	gCt	gTt	62	62	AA.5	1
S	222	A222V	gCt	gTt	62	62	AA.6	1
S	222	A222V	gCt	gTt	62	62	B.1.177.59	1
S	222	A222V	gCt	gTt	61	61	AY.93	0.016658
S	222	A222V	gCt	gTt	61	61	B.1.177.36	0.983871
S	222	A222V	gCt	gTt	59	59	AZ.3	0.089666
S	222	A222V	gCt	gTt	57	57	AY.117	0.004817
S	222	A222V	gCt	gTt	55	55	AY.100	0.00253
S	222	A222V	gCt	gTt	54	55	P.1	0.000851
S	222	A222V	gCT	gTG	1	55	P.1	0.000016
S	222	A222V	gCt	gTt	51	51	AY.118	0.003195
S	222	A222V	gCt	gTt	50	50	B	0.006391
S	222	A222V	gCt	gTt	49	49	AY.33	0.003272
S	222	A222V	gCt	gTt	47	47	B.1.36	0.006857
S	222	A222V	gCt	gTt	46	46	AY.110	0.005184
S	222	A222V	gCt	gTt	45	45	AA.8	1
S	222	A222V	gCt	gTt	44	44	AY.45	0.005354
S	222	A222V	gCt	gTt	44	44	V.1	1
S	222	A222V	gCt	gTt	43	43	AY.32	0.022897
S	222	A222V	gCt	gTt	42	42	AY.14	0.003697
S	222	A222V	gCt	gTt	41	41	AY.16	0.015566
S	222	A222V	gCt	gTt	41	41	B.1.177.89	1
S	222	A222V	gCt	gTt	41	41	B.1.243	0.002853
S	222	A222V	gCt	gTt	40	40	AY.120.2	0.051414
S	222	A222V	gCt	gTt	40	40	AY.5	0.000826
S	222	A222V	gCt	gTt	38	38	D.2	0.002852
S	222	A222V	gCt	gTt	37	37	AA.3	1
S	222	A222V	gCt	gTt	37	37	AY.42	0.001489
S	222	A222V	gCt	gTt	37	37	B.1.177.37	1
S	222	A222V	gCt	gTt	37	37	B.1.588	0.033667
S	222	A222V	gCt	gTt	37	37	C.4	0.37
S	222	A222V	gCt	gTt	36	36	B.1.596	0.003137
S	222	A222V	gCt	gTt	34	34	AY.105	0.021865
S	222	A222V	gCt	gTt	34	34	AY.21	0.064516
S	222	A222V	gCt	gTt	32	32	AY.46	0.003331
S	222	A222V	gCt	gTt	32	32	C.36	0.029144
S	222	A222V	gCt	gTt	31	31	AY.23	0.002162
S	222	A222V	gCt	gTt	31	31	AY.46.2	0.019695
S	222	A222V	gCt	gTt	31	31	V.2	1
S	222	A222V	gCt	gTt	30	30	AY.106	0.010047
S	222	A222V	gCt	gTt	30	30	B.1.160.20	0.267857
S	222	A222V	gCt	gTt	29	29	AY.34.1	0.014788
S	222	A222V	gCt	gTt	27	27	AY.98	0.002133
S	222	A222V	gCt	gTt	27	27	B.1.617.1	0.003482
S	222	A222V	gCt	gTt	26	26	B.1.177.49	0.962963
S	222	A222V	gCt	gTt	26	26	B.1.234	0.003431
S	222	A222V	gCt	gTt	25	25	B.1.438.1	0.002682
S	222	A222V	gCt	gTt	24	24	AY.5.3	0.008097
S	222	A222V	gCt	gTt	24	24	B.1.177.66	1
S	222	A222V	gCt	gTt	22	22	AY.52	0.017915
S	222	A222V	gCt	gTt	22	22	AY.77	0.024803
S	222	A222V	gCt	gTt	22	22	AY.94	0.009739
S	222	A222V	gCt	gTt	22	22	B.1.1.157	0.020091
S	222	A222V	gCt	gTt	21	21	AY.120	0.000781
S	222	A222V	gCt	gTt	21	21	AY.3.1	0.00179
S	222	A222V	gCt	gTt	21	21	AY.50	0.016787
S	222	A222V	gCt	gTt	21	21	B.1.1.301	0.024764
S	222	A222V	gCt	gTt	21	21	B.1.177.31	0.241379
S	222	A222V	gCt	gTt	21	21	B.1.177.61	0.913043
S	222	A222V	gCt	gTt	20	20	AY.53	0.00575
S	222	A222V	gCt	gTt	19	19	B.1.1.325	0.487179
S	222	A222V	gCt	gTt	19	19	B.1.1.39	0.009684
S	222	A222V	gCt	gTt	19	19	B.1.177.34	1
S	222	A222V	gCt	gTt	19	19	B.1.236	0.039014
S	222	A222V	gCt	gTt	18	18	AY.1	0.007123
S	222	A222V	gCt	gTt	17	17	AY.86	0.014108
S	222	A222V	gCt	gTt	16	16	AY.111	0.00293
S	222	A222V	gCt	gTt	16	16	AY.91	0.011687
S	222	A222V	gCt	gTt	16	16	B.1.237	0.079602
S	222	A222V	gCt	gTt	15	15	A.2	0.009927
S	222	A222V	gCt	gTt	15	15	AY.6	0.000617
S	222	A222V	gCt	gTt	15	15	B.1.1.214	0.000832
S	222	A222V	gCt	gTt	15	15	B.1.1.306	0.006576
S	222	A222V	gCt	gTt	14	14	AY.88	0.012378
S	222	A222V	gCt	gTt	14	14	B.1.1.284	0.001504
S	222	A222V	gCt	gTt	14	14	B.1.177.29	0.933333
S	222	A222V	gCt	gTt	14	14	C.37	0.001625
S	222	A222V	gCt	gTt	14	14	P.1.15	0.003253
S	222	A222V	gCt	gTt	13	13	AY.29	0.000205
S	222	A222V	gCt	gTt	13	13	AY.46.5	0.002579
S	222	A222V	gCt	gTt	13	13	AY.46.6	0.000939
S	222	A222V	gCt	gTt	13	13	B.1.36.8	0.013
S	222	A222V	gCt	gTt	12	12	AY.39.1	0.000475
S	222	A222V	gCt	gTt	12	12	AY.40	0.011572
S	222	A222V	gCt	gTt	12	12	B.1.111	0.014101
S	222	A222V	gCt	gTt	12	12	B.1.441	0.115385
S	222	A222V	gCt	gTt	11	11	AY.116	0.003155
S	222	A222V	gCt	gTt	11	11	AY.46.1	0.011294
S	222	A222V	gCt	gTt	11	11	AY.95	0.008371
S	222	A222V	gCt	gTt	11	11	AZ.2	0.009031
S	222	A222V	gCt	gTt	11	11	B.1.1.216	0.009795
S	222	A222V	gCt	gTt	11	11	B.1.177.64	1
S	222	A222V	gCt	gTt	10	10	AY.114	0.002311
S	222	A222V	gCt	gTt	10	10	B.1.1.207	0.01182
S	222	A222V	gCt	gTt	10	10	B.1.160.8	0.012887
S	222	A222V	gCt	gTt	10	10	B.1.36.39	0.022173
S	222	A222V	gCt	gTt	10	10	B.1.369	0.002852
S	222	A222V	gCt	gTt	10	10	B.1.509	0.008658
S	222	A222V	gCt	gTt	9	9	AY.90	0.00616
S	222	A222V	gCt	gTt	9	9	B.1.1.372	0.006198
S	222	A222V	gCt	gTt	9	9	B.1.36.17	0.004447
S	222	A222V	gCt	gTt	9	9	B.1.396	0.006351
S	222	A222V	gCt	gTt	9	9	B.1.621	0.000797
S	222	A222V	gCt	gTt	8	8	AD.2	0.001752
S	222	A222V	gCt	gTt	8	8	AY.107	0.003728
S	222	A222V	gCt	gTt	8	8	AY.12	0.002528
S	222	A222V	gCt	gTt	8	8	AY.84	0.0035
S	222	A222V	gCt	gTt	8	8	B.1.1.1	0.002614
S	222	A222V	gCt	gTt	8	8	B.1.1.189	0.012103
S	222	A222V	gCt	gTt	8	8	B.1.1.434	0.002788
S	222	A222V	gCt	gTt	8	8	B.1.499	0.008403
S	222	A222V	gCt	gTt	8	8	P.2	0.001493
S	222	A222V	gCt	gTt	7	7	A.27	0.011589
S	222	A222V	gCt	gTt	7	7	AY.108	0.007718
S	222	A222V	gCt	gTt	7	7	AY.109	0.005178
S	222	A222V	gCt	gTt	7	7	AY.34	0.000679
S	222	A222V	gCt	gTt	7	7	AY.36	0.001037
S	222	A222V	gCt	gTt	7	7	AY.41	0.002058
S	222	A222V	gCt	gTt	7	7	AY.46.4	0.001152
S	222	A222V	gCt	gTt	7	7	AY.49	0.022364
S	222	A222V	gCt	gTt	7	7	AY.87	0.005828
S	222	A222V	gCt	gTt	7	7	AY.92	0.002011
S	222	A222V	gCt	gTt	7	7	B.1.160.32	0.030043
S	222	A222V	gCt	gTt	7	7	B.1.241	0.005682
S	222	A222V	gCt	gTt	7	7	B.1.258.14	0.006863
S	222	A222V	gCt	gTt	7	7	B.1.258.17	0.000728
S	222	A222V	gCt	gTt	7	7	B.1.416.1	0.010937
S	222	A222V	gCt	gTt	7	7	B.4.1	0.132075
S	222	A222V	gCt	gTt	6	6	AY.4.5	0.000645
S	222	A222V	gCt	gTt	6	6	B.1.1.33	0.002525
S	222	A222V	gCt	gTt	6	6	B.1.1.70	0.002046
S	222	A222V	gCt	gTt	6	6	B.1.36.29	0.003104
S	222	A222V	gCt	gTt	6	6	B.1.517	0.002562
S	222	A222V	gCt	gTt	6	6	B.1.521	0.029851
S	222	A222V	gCt	gTt	6	6	B.1.575.1	0.014634
S	222	A222V	gCt	gTt	6	6	B.1.628	0.002114
S	222	A222V	gCt	gTt	5	5	AE.8	0.002445
S	222	A222V	gCt	gTt	5	5	AY.30	0.001979
S	222	A222V	gCt	gTt	5	5	AY.39.2	0.007704
S	222	A222V	gCt	gTt	5	5	AY.81	0.00996
S	222	A222V	gCt	gTt	5	5	AY.99.2	0.000461
S	222	A222V	gCt	gTt	5	5	B.1.1.230	0.045872
S	222	A222V	gCt	gTt	5	5	B.1.1.486	0.007886
S	222	A222V	gCt	gTt	5	5	B.1.222	0.00846
S	222	A222V	gCt	gTt	5	5	B.1.375	0.004098
S	222	A222V	gCt	gTt	5	5	B.1.409	0.003906
S	222	A222V	gCt	gTt	5	5	B.1.575	0.001517
S	222	A222V	gCt	gTt	5	5	B.1.587	0.009488
S	222	A222V	gCt	gTt	5	5	B.1.609	0.002397
S	222	A222V	gCt	gTt	5	5	B.1.619.1	0.003207
S	222	A222V	gCt	gTt	5	5	C.2	0.080645
S	222	A222V	gCt	gTt	5	5	P.1.1	0.001588
S	222	A222V	gCt	gTt	5	5	P.1.17	0.000809
S	222	A222V	gCt	gTt	5	5	Q.8	0.000825
S	222	A222V	gCt	gTt	4	4	AY.104	0.007937
S	222	A222V	gCt	gTt	4	4	AY.35	0.000932
S	222	A222V	gCt	gTt	4	4	AY.7.1	0.000451
S	222	A222V	gCt	gTt	4	4	AY.76	0.019324
S	222	A222V	gCt	gTt	4	4	AY.85	0.001709
S	222	A222V	gCt	gTt	4	4	AY.96	0.008299
S	222	A222V	gCt	gTt	4	4	AY.99	0.004197
S	222	A222V	gCt	gTt	4	4	B.1.1.315	0.033898
S	222	A222V	gCt	gTt	4	4	B.1.1.348	0.003185
S	222	A222V	gCt	gTt	4	4	B.1.1.63	0.001543
S	222	A222V	gCt	gTt	4	4	B.1.214	0.014652
S	222	A222V	gCt	gTt	4	4	B.1.351.2	0.00121
S	222	A222V	gCt	gTt	4	4	B.1.416	0.005076
S	222	A222V	gCt	gTt	4	4	B.1.525	0.000453
S	222	A222V	gCt	gTt	4	4	B.1.551	0.005161
S	222	A222V	gCt	gTt	4	4	B.1.599	0.014599
S	222	A222V	gCt	gTt	3	3	A.2.5	0.001497
S	222	A222V	gCt	gTt	3	3	AY.101	0.001471
S	222	A222V	gCt	gTt	3	3	AY.51	0.002727
S	222	A222V	gCt	gTt	3	3	AY.8	0.001818
S	222	A222V	gCt	gTt	3	3	AY.82	0.004071
S	222	A222V	gCt	gTt	3	3	B.1.1.222	0.000612
S	222	A222V	gCt	gTt	3	3	B.1.1.255	0.009091
S	222	A222V	gCt	gTt	3	3	B.1.1.263	0.004673
S	222	A222V	gCt	gTt	3	3	B.1.1.294	0.003797
S	222	A222V	gCt	gTt	3	3	B.1.1.297	0.006711
S	222	A222V	gCt	gTt	3	3	B.1.1.311	0.001074
S	222	A222V	gCt	gTt	3	3	B.1.1.332	0.09375
S	222	A222V	gCt	gTt	3	3	B.1.1.347	0.054545
S	222	A222V	gCt	gTt	3	3	B.1.1.385	0.013393
S	222	A222V	gCt	gTt	3	3	B.1.157	0.008955
S	222	A222V	gCt	gTt	3	3	B.1.158	0.071429
S	222	A222V	gCt	gTt	3	3	B.1.160.14	0.006356
S	222	A222V	gCt	gTt	3	3	B.1.260	0.010033
S	222	A222V	gCt	gTt	3	3	B.1.320	0.003736
S	222	A222V	gCt	gTt	3	3	B.1.389	0.003006
S	222	A222V	gCt	gTt	3	3	B.1.400	0.001287
S	222	A222V	gCt	gTt	3	3	B.1.411	0.011111
S	222	A222V	gCt	gTt	3	3	B.1.433	0.009585
S	222	A222V	gCt	gTt	3	3	B.1.438	0.019608
S	222	A222V	gCt	gTt	3	3	B.1.466.2	0.001174
S	222	A222V	gCt	gTt	3	3	B.1.471	0.008197
S	222	A222V	gCt	gTt	3	3	B.1.473	0.057692
S	222	A222V	gCt	gTt	3	3	B.1.561	0.001191
S	222	A222V	gCt	gTt	3	3	B.1.582	0.001472
S	222	A222V	gCt	gTt	3	3	B.1.612	0.007958
S	222	A222V	gCt	gTt	3	3	B.1.639	0.065217
S	222	A222V	gCt	gTt	3	3	B.40	0.001093
S	222	A222V	gCt	gTt	3	3	C.1	0.007177
S	222	A222V	gCt	gTt	3	3	C.14	0.012987
S	222	A222V	gCt	gTt	3	3	P.1.12	0.001452
S	222	A222V	gCt	gTt	3	3	P.1.14	0.000143
S	222	A222V	gCt	gTt	3	3	P.1.17.1	0.002625
S	222	A222V	gCt	gTt	2	2	A.21	0.00554
S	222	A222V	gCt	gTt	2	2	AU.1	0.002532
S	222	A222V	gCt	gTt	2	2	AY.17	0.016393
S	222	A222V	gCt	gTt	2	2	AY.7	0.000392
S	222	A222V	gCt	gTt	2	2	AY.7.2	0.001119
S	222	A222V	gCt	gTt	2	2	B.1.1.141	0.004024
S	222	A222V	gCt	gTt	2	2	B.1.1.196	0.011429
S	222	A222V	gCt	gTt	2	2	B.1.1.25	0.001137
S	222	A222V	gCt	gTt	2	2	B.1.1.279	0.002242
S	222	A222V	gCt	gTt	2	2	B.1.1.312	0.003824
S	222	A222V	gCt	gTt	2	2	B.1.1.318	0.000604
S	222	A222V	gCt	gTt	2	2	B.1.1.326	0.003521
S	222	A222V	gCt	gTt	2	2	B.1.1.368	0.006173
S	222	A222V	gCt	gTt	2	2	B.1.1.369	0.000892
S	222	A222V	gCt	gTt	2	2	B.1.1.409	0.005666
S	222	A222V	gCt	gTt	2	2	B.1.1.521	0.010695
S	222	A222V	gCt	gTt	2	2	B.1.1.523	0.003125
S	222	A222V	gCt	gTt	2	2	B.1.1.8	0.007168
S	222	A222V	gCt	gTt	2	2	B.1.126	0.002551
S	222	A222V	gCt	gTt	2	2	B.1.160.10	0.016129
S	222	A222V	gCt	gTt	2	2	B.1.160.16	0.001859
S	222	A222V	gCt	gTt	2	2	B.1.160.17	0.003401
S	222	A222V	gCt	gTt	2	2	B.1.162	0.01005
S	222	A222V	gCt	gTt	2	2	B.1.232	0.001075
S	222	A222V	gCt	gTt	2	2	B.1.240	0.000431
S	222	A222V	gCt	gTt	2	2	B.1.258.11	0.000793
S	222	A222V	gCt	gTt	2	2	B.1.336	0.004878
S	222	A222V	gCt	gTt	2	2	B.1.351.3	0.001753
S	222	A222V	gCt	gTt	2	2	B.1.36.18	0.00084
S	222	A222V	gCt	gTt	2	2	B.1.36.27	0.001527
S	222	A222V	gCt	gTt	2	2	B.1.362	0.003082
S	222	A222V	gCt	gTt	2	2	B.1.468	0.011429
S	222	A222V	gCt	gTt	2	2	B.1.470	0.002809
S	222	A222V	gCt	gTt	2	2	B.1.530	0.014286
S	222	A222V	gCt	gTt	2	2	B.1.576	0.001813
S	222	A222V	gCt	gTt	2	2	B.1.595	0.000522
S	222	A222V	gCt	gTt	2	2	B.1.621.1	0.001012
S	222	A222V	gCt	gTt	2	2	B.1.627	0.00404
S	222	A222V	gCt	gTt	2	2	C.16	0.002121
S	222	A222V	gCt	gTt	2	2	C.35	0.001548
S	222	A222V	gCt	gTt	2	2	K.1	0.047619
S	222	A222V	gCt	gTt	2	2	P.1.10	0.000539
S	222	A222V	gCt	gTt	2	2	P.1.7	0.000639
S	222	A222V	gCt	gTt	2	2	P.3	0.00319
S	222	A222V	gCt	gTt	1	1		0.055556
S	222	A222V	gCt	gTt	1	1	A.19	0.009434
S	222	A222V	gCt	gTt	1	1	A.2.3	0.004739
S	222	A222V	gCt	gTt	1	1	AP.1	0.001502
S	222	A222V	gCt	gTt	1	1	AY.116.1	0.000311
S	222	A222V	gCt	gTt	1	1	AY.120.1	0.000321
S	222	A222V	gCt	gTt	1	1	AY.22	0.002092
S	222	A222V	gCt	gTt	1	1	AY.39.1.1	0.000725
S	222	A222V	gCt	gTt	1	1	AY.4.4	0.000409
S	222	A222V	gCt	gTt	1	1	AY.46.3	0.000934
S	222	A222V	gCt	gTt	1	1	AY.5.4	0.000277
S	222	A222V	gCt	gTt	1	1	AY.78	0.001541
S	222	A222V	gCt	gTt	1	1	AY.83	0.001724
S	222	A222V	gCt	gTt	1	1	AZ.5	0.003509
S	222	A222V	gCt	gTt	1	1	B.1.1.134	0.011364
S	222	A222V	gCt	gTt	1	1	B.1.1.153	0.001095
S	222	A222V	gCt	gTt	1	1	B.1.1.161	0.003534
S	222	A222V	gCt	gTt	1	1	B.1.1.163	0.007634
S	222	A222V	gCt	gTt	1	1	B.1.1.174	0.003378
S	222	A222V	gCt	gTt	1	1	B.1.1.192	0.002309
S	222	A222V	gCt	gTt	1	1	B.1.1.200	0.007463
S	222	A222V	gCt	gTt	1	1	B.1.1.220	0.001859
S	222	A222V	gCt	gTt	1	1	B.1.1.227	0.004348
S	222	A222V	gCt	gTt	1	1	B.1.1.241	0.00207
S	222	A222V	gCt	gTt	1	1	B.1.1.269	0.001353
S	222	A222V	gCt	gTt	1	1	B.1.1.277	0.000759
S	222	A222V	gCt	gTt	1	1	B.1.1.3	0.008696
S	222	A222V	gCt	gTt	1	1	B.1.1.302	0.002075
S	222	A222V	gCt	gTt	1	1	B.1.1.316	0.000925
S	222	A222V	gCt	gTt	1	1	B.1.1.354	0.004386
S	222	A222V	gCt	gTt	1	1	B.1.1.398	0.003226
S	222	A222V	gCt	gTt	1	1	B.1.1.401	0.066667
S	222	A222V	gCt	gTt	1	1	B.1.1.431	0.016129
S	222	A222V	gCt	gTt	1	1	B.1.1.44	0.00241
S	222	A222V	gCt	gTt	1	1	B.1.1.448	0.002033
S	222	A222V	gCt	gTt	1	1	B.1.1.46	0.004367
S	222	A222V	gCt	gTt	1	1	B.1.1.47	0.005348
S	222	A222V	gCt	gTt	1	1	B.1.1.487	0.005587
S	222	A222V	gCt	gTt	1	1	B.1.1.50	0.000679
S	222	A222V	gCt	gTt	1	1	B.1.1.52	0.012195
S	222	A222V	gCt	gTt	1	1	B.1.1.526	0.003546
S	222	A222V	gCt	gTt	1	1	B.1.1.528	0.004808
S	222	A222V	gCt	gTt	1	1	B.1.1.54	0.003021
S	222	A222V	gCt	gTt	1	1	B.1.1.58	0.005376
S	222	A222V	gCt	gTt	1	1	B.1.110.3	0.000718
S	222	A222V	gCt	gTt	1	1	B.1.128	0.000635
S	222	A222V	gCt	gTt	1	1	B.1.139	0.000733
S	222	A222V	gCt	gTt	1	1	B.1.146	0.004237
S	222	A222V	gCt	gTt	1	1	B.1.153	0.018868
S	222	A222V	gCt	gTt	1	1	B.1.160.15	0.00495
S	222	A222V	gCt	gTt	1	1	B.1.170	0.00431
S	222	A222V	gCt	gTt	1	1	B.1.218	0.005155
S	222	A222V	gCt	gTt	1	1	B.1.221.1	0.002907
S	222	A222V	gCt	gTt	1	1	B.1.229	0.009709
S	222	A222V	gCt	gTt	1	1	B.1.233	0.014085
S	222	A222V	gCt	gTt	1	1	B.1.239	0.001221
S	222	A222V	gCt	gTt	1	1	B.1.258.12	0.007874
S	222	A222V	gCt	gTt	1	1	B.1.279	0.000514
S	222	A222V	gCt	gTt	1	1	B.1.281	0.021739
S	222	A222V	gCt	gTt	1	1	B.1.289	0.00266
S	222	A222V	gCt	gTt	1	1	B.1.311	0.000275
S	222	A222V	gCt	gTt	1	1	B.1.326	0.007576
S	222	A222V	gCt	gTt	1	1	B.1.329	0.000608
S	222	A222V	gCt	gTt	1	1	B.1.346	0.001311
S	222	A222V	gCt	gTt	1	1	B.1.349	0.000715
S	222	A222V	gCt	gTt	1	1	B.1.355	0.011111
S	222	A222V	gCt	gTt	1	1	B.1.36.1	0.00114
S	222	A222V	gCt	gTt	1	1	B.1.36.19	0.009259
S	222	A222V	gCt	gTt	1	1	B.1.36.35	0.002604
S	222	A222V	gCt	gTt	1	1	B.1.36.7	0.004
S	222	A222V	gCt	gTt	1	1	B.1.362.2	0.004717
S	222	A222V	gCt	gTt	1	1	B.1.366	0.004878
S	222	A222V	gCt	gTt	1	1	B.1.391	0.001127
S	222	A222V	gCt	gTt	1	1	B.1.424	0.008065
S	222	A222V	gCt	gTt	1	1	B.1.432	0.011236
S	222	A222V	gCt	gTt	1	1	B.1.437	0.020833
S	222	A222V	gCt	gTt	1	1	B.1.456	0.003268
S	222	A222V	gCt	gTt	1	1	B.1.462	0.007246
S	222	A222V	gCt	gTt	1	1	B.1.466	0.023256
S	222	A222V	gCt	gTt	1	1	B.1.469	0.00361
S	222	A222V	gCt	gTt	1	1	B.1.474	0.001901
S	222	A222V	gCt	gTt	1	1	B.1.497	0.000315
S	222	A222V	gCt	gTt	1	1	B.1.516	0.001957
S	222	A222V	gCt	gTt	1	1	B.1.527	0.003704
S	222	A222V	gCt	gTt	1	1	B.1.538	0.008065
S	222	A222V	gCt	gTt	1	1	B.1.540	0.009709
S	222	A222V	gCt	gTt	1	1	B.1.558	0.004566
S	222	A222V	gCt	gTt	1	1	B.1.568	0.001111
S	222	A222V	gCt	gTt	1	1	B.1.581	0.009434
S	222	A222V	gCt	gTt	1	1	B.1.597	0.00463
S	222	A222V	gCt	gTt	1	1	B.1.604	0.017241
S	222	A222V	gCt	gTt	1	1	B.1.606	0.006024
S	222	A222V	gCt	gTt	1	1	B.1.620	0.000946
S	222	A222V	gCt	gTt	1	1	B.1.623	0.000536
S	222	A222V	gCt	gTt	1	1	B.1.625	0.002353
S	222	A222V	gCt	gTt	1	1	B.1.626	0.005714
S	222	A222V	gCt	gTt	1	1	B.1.629	0.013333
S	222	A222V	gCt	gTt	1	1	B.1.636	0.006711
S	222	A222V	gCt	gTt	1	1	B.1.81	0.021277
S	222	A222V	gCt	gTt	1	1	B.1.9.4	0.006135
S	222	A222V	gCt	gTt	1	1	B.1.9.5	0.005682
S	222	A222V	gCt	gTt	1	1	B.1.93	0.000934
S	222	A222V	gCt	gTt	1	1	B.1.94	0.027027
S	222	A222V	gCt	gTt	1	1	B.3	0.000831
S	222	A222V	gCt	gTt	1	1	B.35	0.007812
S	222	A222V	gCt	gTt	1	1	B.4	0.002208
S	222	A222V	gCt	gTt	1	1	B.6.6	0.000889
S	222	A222V	gCt	gTt	1	1	C.30	0.001727
S	222	A222V	gCt	gTt	1	1	C.33	0.058824
S	222	A222V	gCt	gTt	1	1	D.5	0.004975
S	222	A222V	gCt	gTt	1	1	N.10	0.029412
S	222	A222V	gCt	gTt	1	1	N.3	0.005814
S	222	A222V	gCt	gTt	1	1	P.1.16	0.000374
S	222	A222V	gCt	gTt	1	1	P.1.9	0.004808
S	222	A222V	gCt	gTt	1	1	P.5	0.013699
S	222	A222V	gCt	gTt	1	1	P.7	0.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.