CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = A163A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S163A163AsyngcGgcC19456147060.75585922049-22051
S163A163AsyngcGgcT1945645960.23622522049-22051
S163A163AsyngcGgcA194561540.007915322049-22051

Details of the mutation A163A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S163A163AgcGgcC1470619456All0.002813
S163A163AgcGgcT459619456All0.000879
S163A163AgcGgcA15419456All0.000029
S163A163AgcGgcC1420214387AY.40.022104
S163A163AgcGgcT18214387AY.40.000283
S163A163AgcGgcA314387AY.40.000005
S163A163AgcGgcT15201520B.1.177.150.958991
S163A163AgcGgcT497570B.1.1.70.000445
S163A163AgcGgcA43570B.1.1.70.000038
S163A163AgcGgcC30570B.1.1.70.000027
S163A163AgcGgcT182371B.1.617.20.000685
S163A163AgcGgcC175371B.1.617.20.000659
S163A163AgcGgcA14371B.1.617.20.000053
S163A163AgcGgcT288288AY.630.111412
S163A163AgcGgcT130139B.1.1770.001712
S163A163AgcGgcA9139B.1.1770.000119
S163A163AgcGgcT138138AA.11
S163A163AgcGgcT67136AY.430.000297
S163A163AgcGgcC63136AY.430.000279
S163A163AgcGgcA6136AY.430.000027
S163A163AgcGgcT130130AA.21
S163A163AgcGgcT110110AA.41
S163A163AgcGgcT109109AA.71
S163A163AgcGgcC6996AY.390.001705
S163A163AgcGgcT2696AY.390.000642
S163A163AgcGgcA196AY.390.000025
S163A163AgcGgcT4481AY.470.001369
S163A163AgcGgcC3781AY.470.001151
S163A163AgcGgcT7474AY.1140.017102
S163A163AgcGgcT6262AA.51
S163A163AgcGgcT6262AA.61
S163A163AgcGgcT4453B.10.000403
S163A163AgcGgcA753B.10.000064
S163A163AgcGgcC253B.10.000018
S163A163AgcGgcT4949P.1.140.002342
S163A163AgcGgcT4545AA.81
S163A163AgcGgcT3140AY.30.000308
S163A163AgcGgcC840AY.30.00008
S163A163AgcGgcA140AY.30.00001
S163A163AgcGgcT3940AY.7.10.004395
S163A163AgcGgcA140AY.7.10.000113
S163A163AgcGgcT3439AY.440.000207
S163A163AgcGgcC339AY.440.000018
S163A163AgcGgcA239AY.440.000012
S163A163AgcGgcC3939AY.530.011213
S163A163AgcGgcT3737AA.31
S163A163AgcGgcT2937P.10.000457
S163A163AgcGgcA637P.10.000095
S163A163AgcGgcC237P.10.000032
S163A163AgcGgcT3031AY.50.000619
S163A163AgcGgcC131AY.50.000021
S163A163AgcGgcT2929AY.250.000174
S163A163AgcGgcT2727AY.98.10.001308
S163A163AgcGgcT2427B.1.20.000211
S163A163AgcGgcC227B.1.20.000018
S163A163AgcGgcA127B.1.20.000009
S163A163AgcGgcT2626AY.870.021649
S163A163AgcGgcT2224B.1.10.000399
S163A163AgcGgcC224B.1.10.000036
S163A163AgcGgcT2424B.1.1.5190.000953
S163A163AgcGgcT1922AY.1030.000118
S163A163AgcGgcA222AY.1030.000012
S163A163AgcGgcC122AY.1030.000006
S163A163AgcGgcT1820B.1.360.002626
S163A163AgcGgcA220B.1.360.000292
S163A163AgcGgcT1118B.1.1600.000343
S163A163AgcGgcC618B.1.1600.000187
S163A163AgcGgcA118B.1.1600.000031
S163A163AgcGgcT1617AY.1200.000595
S163A163AgcGgcC117AY.1200.000037
S163A163AgcGgcC917AY.420.000362
S163A163AgcGgcT717AY.420.000282
S163A163AgcGgcA117AY.420.00004
S163A163AgcGgcT1616AY.5.40.004427
S163A163AgcGgcT1215AY.60.000494
S163A163AgcGgcC215AY.60.000082
S163A163AgcGgcA115AY.60.000041
S163A163AgcGgcT1015AY.9.20.000367
S163A163AgcGgcA315AY.9.20.00011
S163A163AgcGgcC215AY.9.20.000073
S163A163AgcGgcT1515B.1.1.250.008528
S163A163AgcGgcT1414AY.90.000946
S163A163AgcGgcC1013B.1.177.810.001893
S163A163AgcGgcT213B.1.177.810.000379
S163A163AgcGgcA113B.1.177.810.000189
S163A163AgcGgcT813B.1.4290.000188
S163A163AgcGgcA513B.1.4290.000118
S163A163AgcGgcT1111C.370.001277
S163A163AgcGgcT910AY.260.000255
S163A163AgcGgcC110AY.260.000028
S163A163AgcGgcT910B.1.2210.000639
S163A163AgcGgcC110B.1.2210.000071
S163A163AgcGgcA510P.20.000933
S163A163AgcGgcT510P.20.000933
S163A163AgcGgcT99B.1.2100.01919
S163A163AgcGgcT88AY.1190.000282
S163A163AgcGgcT88AY.340.000776
S163A163AgcGgcA88B.1.177.580.010652
S163A163AgcGgcT48P.1.150.000929
S163A163AgcGgcA48P.1.150.000929
S163A163AgcGgcT67AY.450.00073
S163A163AgcGgcC17AY.450.000122
S163A163AgcGgcT57AY.690.000933
S163A163AgcGgcC17AY.690.000187
S163A163AgcGgcA17AY.690.000187
S163A163AgcGgcT67B.1.3510.000178
S163A163AgcGgcA17B.1.3510.00003
S163A163AgcGgcT77B.1.5750.002124
S163A163AgcGgcT66AY.1170.000507
S163A163AgcGgcT56AY.230.000349
S163A163AgcGgcC16AY.230.00007
S163A163AgcGgcT56AY.99.20.000461
S163A163AgcGgcA16AY.99.20.000092
S163A163AgcGgcT66B.1.1.3980.019355
S163A163AgcGgcT66B.1.2430.000418
S163A163AgcGgcT56B.1.5260.000118
S163A163AgcGgcA16B.1.5260.000024
S163A163AgcGgcT45AY.4.50.00043
S163A163AgcGgcC15AY.4.50.000107
S163A163AgcGgcT45AY.46.60.000289
S163A163AgcGgcA15AY.46.60.000072
S163A163AgcGgcT55B.1.1.3110.001791
S163A163AgcGgcA45B.1.36.290.002069
S163A163AgcGgcT15B.1.36.290.000517
S163A163AgcGgcT55B.1.3970.024272
S163A163AgcGgcT55B.1.4270.000252
S163A163AgcGgcT55B.1.5680.005556
S163A163AgcGgcT44AY.1000.000184
S163A163AgcGgcT24AY.1020.000053
S163A163AgcGgcC14AY.1020.000027
S163A163AgcGgcA14AY.1020.000027
S163A163AgcGgcT34AY.1210.000406
S163A163AgcGgcC14AY.1210.000135
S163A163AgcGgcT34AY.140.000264
S163A163AgcGgcA14AY.140.000088
S163A163AgcGgcT44AY.16.10.00188
S163A163AgcGgcT34AY.200.000117
S163A163AgcGgcA14AY.200.000039
S163A163AgcGgcT34AY.290.000047
S163A163AgcGgcA14AY.290.000016
S163A163AgcGgcT34AY.330.0002
S163A163AgcGgcC14AY.330.000067
S163A163AgcGgcT34AY.980.000237
S163A163AgcGgcC14AY.980.000079
S163A163AgcGgcT44B.1.1.10.001307
S163A163AgcGgcT34B.1.1.280.000934
S163A163AgcGgcC14B.1.1.280.000311
S163A163AgcGgcC44B.1.1.3050.015444
S163A163AgcGgcT44B.1.2400.000862
S163A163AgcGgcT44B.1.6250.009412
S163A163AgcGgcT330.166667
S163A163AgcGgcC33AY.1050.001929
S163A163AgcGgcT33AY.1180.000188
S163A163AgcGgcT33AY.380.001498
S163A163AgcGgcT33AY.39.10.000119
S163A163AgcGgcT23AY.4.20.000043
S163A163AgcGgcA13AY.4.20.000022
S163A163AgcGgcT23AY.460.000208
S163A163AgcGgcC13AY.460.000104
S163A163AgcGgcC33AY.540.000286
S163A163AgcGgcT33AY.820.004071
S163A163AgcGgcT33B.1.1.1760.001318
S163A163AgcGgcT33B.1.1.2140.000166
S163A163AgcGgcT23B.1.1.330.000842
S163A163AgcGgcC13B.1.1.330.000421
S163A163AgcGgcT33B.1.2580.0002
S163A163AgcGgcT33B.1.351.20.000908
S163A163AgcGgcT33B.1.3890.003006
S163A163AgcGgcT33B.1.617.10.000387
S163A163AgcGgcC23B.1.6280.000705
S163A163AgcGgcT13B.1.6280.000352
S163A163AgcGgcT22AY.10.000791
S163A163AgcGgcC22AY.1080.002205
S163A163AgcGgcT22AY.1100.000225
S163A163AgcGgcT22AY.120.10.000642
S163A163AgcGgcA22AY.240.000862
S163A163AgcGgcT22AY.46.50.000397
S163A163AgcGgcT22AY.550.001835
S163A163AgcGgcT22AY.610.00021
S163A163AgcGgcT22AY.680.000547
S163A163AgcGgcT12AY.9.10.000084
S163A163AgcGgcC12AY.9.10.000084
S163A163AgcGgcC22AY.990.002099
S163A163AgcGgcT22B0.000256
S163A163AgcGgcT22B.1.1.3060.000877
S163A163AgcGgcA22B.1.1.570.022989
S163A163AgcGgcT22B.1.1390.001466
S163A163AgcGgcT22B.1.177.20.009091
S163A163AgcGgcT22B.1.177.540.001213
S163A163AgcGgcT22B.1.177.560.001335
S163A163AgcGgcT22B.1.177.650.001331
S163A163AgcGgcT22B.1.177.70.00033
S163A163AgcGgcA22B.1.2340.000264
S163A163AgcGgcT22B.1.2390.002442
S163A163AgcGgcT22B.1.36.80.002
S163A163AgcGgcT22B.1.466.20.000782
S163A163AgcGgcT22B.1.4710.005464
S163A163AgcGgcC22B.1.6210.000177
S163A163AgcGgcT22B.400.000729
S163A163AgcGgcT22P.1.10.000635
S163A163AgcGgcC12P.1.70.000319
S163A163AgcGgcT12P.1.70.000319
S163A163AgcGgcA11A0.000387
S163A163AgcGgcT11AD.20.000219
S163A163AgcGgcA11AY.1010.00049
S163A163AgcGgcT11AY.1040.001984
S163A163AgcGgcT11AY.1060.000335
S163A163AgcGgcC11AY.1130.000142
S163A163AgcGgcT11AY.120.000316
S163A163AgcGgcT11AY.160.00038
S163A163AgcGgcT11AY.190.00114
S163A163AgcGgcC11AY.23.10.000417
S163A163AgcGgcT11AY.280.00189
S163A163AgcGgcA11AY.3.10.000085
S163A163AgcGgcT11AY.300.000396
S163A163AgcGgcT11AY.370.000316
S163A163AgcGgcC11AY.4.2.10.000149
S163A163AgcGgcC11AY.4.30.000842
S163A163AgcGgcT11AY.4.40.000409
S163A163AgcGgcT11AY.410.000294
S163A163AgcGgcT11AY.46.20.000635
S163A163AgcGgcT11AY.480.000465
S163A163AgcGgcT11AY.5.30.000337
S163A163AgcGgcT11AY.520.000814
S163A163AgcGgcT11AY.600.000938
S163A163AgcGgcT11AY.650.000533
S163A163AgcGgcC11AY.70.000196
S163A163AgcGgcT11AY.700.000209
S163A163AgcGgcT11AY.710.000475
S163A163AgcGgcT11AY.75.10.00018
S163A163AgcGgcA11AY.80.000606
S163A163AgcGgcT11AY.860.00083
S163A163AgcGgcC11AY.880.000884
S163A163AgcGgcT11AY.890.004902
S163A163AgcGgcT11AY.950.000761
S163A163AgcGgcT11B.1.1.2220.000204
S163A163AgcGgcT11B.1.1.2630.001558
S163A163AgcGgcT11B.1.1.3180.000302
S163A163AgcGgcT11B.1.1.370.000193
S163A163AgcGgcT11B.1.1.3750.011905
S163A163AgcGgcT11B.1.1.4860.001577
S163A163AgcGgcT11B.1.1.5210.005348
S163A163AgcGgcT11B.1.1.5230.001563
S163A163AgcGgcT11B.1.1.700.000341
S163A163AgcGgcT11B.1.1.970.029412
S163A163AgcGgcT11B.1.1470.000756
S163A163AgcGgcT11B.1.177.120.000152
S163A163AgcGgcT11B.1.177.160.000664
S163A163AgcGgcT11B.1.177.210.000076
S163A163AgcGgcT11B.1.177.40.000211
S163A163AgcGgcT11B.1.177.60.000977
S163A163AgcGgcT11B.1.177.830.001481
S163A163AgcGgcT11B.1.177.860.000183
S163A163AgcGgcT11B.1.2120.016667
S163A163AgcGgcT11B.1.2140.003663
S163A163AgcGgcA11B.1.2600.003344
S163A163AgcGgcT11B.1.3670.000792
S163A163AgcGgcT11B.1.3690.000285
S163A163AgcGgcT11B.1.3810.007812
S163A163AgcGgcT11B.1.4040.001302
S163A163AgcGgcT11B.1.4680.005714
S163A163AgcGgcA11B.1.4690.00361
S163A163AgcGgcT11B.1.5250.000113
S163A163AgcGgcT11B.1.5740.002151
S163A163AgcGgcT11B.1.5960.000087
S163A163AgcGgcT11B.1.6120.002653
S163A163AgcGgcT11B.1.617.30.002985
S163A163AgcGgcC11B.1.6300.005236
S163A163AgcGgcT11B.1.830.015385
S163A163AgcGgcT11B.30.000831
S163A163AgcGgcT11B.350.007812
S163A163AgcGgcA11B.60.00091
S163A163AgcGgcT11B.6.60.000889
S163A163AgcGgcT11D.20.000075
S163A163AgcGgcT11N.10.016949
S163A163AgcGgcT11Q.30.000145
S163A163AgcGgcT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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