CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 163 | A163A | syn | gcG | gcC | 19456 | 14706 | 0.755859 | 22049-22051 | |
S | 163 | A163A | syn | gcG | gcT | 19456 | 4596 | 0.236225 | 22049-22051 | |
S | 163 | A163A | syn | gcG | gcA | 19456 | 154 | 0.0079153 | 22049-22051 |
Details of the mutation A163A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 163 | A163A | gcG | gcC | 14706 | 19456 | All | 0.002813 |
S | 163 | A163A | gcG | gcT | 4596 | 19456 | All | 0.000879 |
S | 163 | A163A | gcG | gcA | 154 | 19456 | All | 0.000029 |
S | 163 | A163A | gcG | gcC | 14202 | 14387 | AY.4 | 0.022104 |
S | 163 | A163A | gcG | gcT | 182 | 14387 | AY.4 | 0.000283 |
S | 163 | A163A | gcG | gcA | 3 | 14387 | AY.4 | 0.000005 |
S | 163 | A163A | gcG | gcT | 1520 | 1520 | B.1.177.15 | 0.958991 |
S | 163 | A163A | gcG | gcT | 497 | 570 | B.1.1.7 | 0.000445 |
S | 163 | A163A | gcG | gcA | 43 | 570 | B.1.1.7 | 0.000038 |
S | 163 | A163A | gcG | gcC | 30 | 570 | B.1.1.7 | 0.000027 |
S | 163 | A163A | gcG | gcT | 182 | 371 | B.1.617.2 | 0.000685 |
S | 163 | A163A | gcG | gcC | 175 | 371 | B.1.617.2 | 0.000659 |
S | 163 | A163A | gcG | gcA | 14 | 371 | B.1.617.2 | 0.000053 |
S | 163 | A163A | gcG | gcT | 288 | 288 | AY.63 | 0.111412 |
S | 163 | A163A | gcG | gcT | 130 | 139 | B.1.177 | 0.001712 |
S | 163 | A163A | gcG | gcA | 9 | 139 | B.1.177 | 0.000119 |
S | 163 | A163A | gcG | gcT | 138 | 138 | AA.1 | 1 |
S | 163 | A163A | gcG | gcT | 67 | 136 | AY.43 | 0.000297 |
S | 163 | A163A | gcG | gcC | 63 | 136 | AY.43 | 0.000279 |
S | 163 | A163A | gcG | gcA | 6 | 136 | AY.43 | 0.000027 |
S | 163 | A163A | gcG | gcT | 130 | 130 | AA.2 | 1 |
S | 163 | A163A | gcG | gcT | 110 | 110 | AA.4 | 1 |
S | 163 | A163A | gcG | gcT | 109 | 109 | AA.7 | 1 |
S | 163 | A163A | gcG | gcC | 69 | 96 | AY.39 | 0.001705 |
S | 163 | A163A | gcG | gcT | 26 | 96 | AY.39 | 0.000642 |
S | 163 | A163A | gcG | gcA | 1 | 96 | AY.39 | 0.000025 |
S | 163 | A163A | gcG | gcT | 44 | 81 | AY.47 | 0.001369 |
S | 163 | A163A | gcG | gcC | 37 | 81 | AY.47 | 0.001151 |
S | 163 | A163A | gcG | gcT | 74 | 74 | AY.114 | 0.017102 |
S | 163 | A163A | gcG | gcT | 62 | 62 | AA.5 | 1 |
S | 163 | A163A | gcG | gcT | 62 | 62 | AA.6 | 1 |
S | 163 | A163A | gcG | gcT | 44 | 53 | B.1 | 0.000403 |
S | 163 | A163A | gcG | gcA | 7 | 53 | B.1 | 0.000064 |
S | 163 | A163A | gcG | gcC | 2 | 53 | B.1 | 0.000018 |
S | 163 | A163A | gcG | gcT | 49 | 49 | P.1.14 | 0.002342 |
S | 163 | A163A | gcG | gcT | 45 | 45 | AA.8 | 1 |
S | 163 | A163A | gcG | gcT | 31 | 40 | AY.3 | 0.000308 |
S | 163 | A163A | gcG | gcC | 8 | 40 | AY.3 | 0.00008 |
S | 163 | A163A | gcG | gcA | 1 | 40 | AY.3 | 0.00001 |
S | 163 | A163A | gcG | gcT | 39 | 40 | AY.7.1 | 0.004395 |
S | 163 | A163A | gcG | gcA | 1 | 40 | AY.7.1 | 0.000113 |
S | 163 | A163A | gcG | gcT | 34 | 39 | AY.44 | 0.000207 |
S | 163 | A163A | gcG | gcC | 3 | 39 | AY.44 | 0.000018 |
S | 163 | A163A | gcG | gcA | 2 | 39 | AY.44 | 0.000012 |
S | 163 | A163A | gcG | gcC | 39 | 39 | AY.53 | 0.011213 |
S | 163 | A163A | gcG | gcT | 37 | 37 | AA.3 | 1 |
S | 163 | A163A | gcG | gcT | 29 | 37 | P.1 | 0.000457 |
S | 163 | A163A | gcG | gcA | 6 | 37 | P.1 | 0.000095 |
S | 163 | A163A | gcG | gcC | 2 | 37 | P.1 | 0.000032 |
S | 163 | A163A | gcG | gcT | 30 | 31 | AY.5 | 0.000619 |
S | 163 | A163A | gcG | gcC | 1 | 31 | AY.5 | 0.000021 |
S | 163 | A163A | gcG | gcT | 29 | 29 | AY.25 | 0.000174 |
S | 163 | A163A | gcG | gcT | 27 | 27 | AY.98.1 | 0.001308 |
S | 163 | A163A | gcG | gcT | 24 | 27 | B.1.2 | 0.000211 |
S | 163 | A163A | gcG | gcC | 2 | 27 | B.1.2 | 0.000018 |
S | 163 | A163A | gcG | gcA | 1 | 27 | B.1.2 | 0.000009 |
S | 163 | A163A | gcG | gcT | 26 | 26 | AY.87 | 0.021649 |
S | 163 | A163A | gcG | gcT | 22 | 24 | B.1.1 | 0.000399 |
S | 163 | A163A | gcG | gcC | 2 | 24 | B.1.1 | 0.000036 |
S | 163 | A163A | gcG | gcT | 24 | 24 | B.1.1.519 | 0.000953 |
S | 163 | A163A | gcG | gcT | 19 | 22 | AY.103 | 0.000118 |
S | 163 | A163A | gcG | gcA | 2 | 22 | AY.103 | 0.000012 |
S | 163 | A163A | gcG | gcC | 1 | 22 | AY.103 | 0.000006 |
S | 163 | A163A | gcG | gcT | 18 | 20 | B.1.36 | 0.002626 |
S | 163 | A163A | gcG | gcA | 2 | 20 | B.1.36 | 0.000292 |
S | 163 | A163A | gcG | gcT | 11 | 18 | B.1.160 | 0.000343 |
S | 163 | A163A | gcG | gcC | 6 | 18 | B.1.160 | 0.000187 |
S | 163 | A163A | gcG | gcA | 1 | 18 | B.1.160 | 0.000031 |
S | 163 | A163A | gcG | gcT | 16 | 17 | AY.120 | 0.000595 |
S | 163 | A163A | gcG | gcC | 1 | 17 | AY.120 | 0.000037 |
S | 163 | A163A | gcG | gcC | 9 | 17 | AY.42 | 0.000362 |
S | 163 | A163A | gcG | gcT | 7 | 17 | AY.42 | 0.000282 |
S | 163 | A163A | gcG | gcA | 1 | 17 | AY.42 | 0.00004 |
S | 163 | A163A | gcG | gcT | 16 | 16 | AY.5.4 | 0.004427 |
S | 163 | A163A | gcG | gcT | 12 | 15 | AY.6 | 0.000494 |
S | 163 | A163A | gcG | gcC | 2 | 15 | AY.6 | 0.000082 |
S | 163 | A163A | gcG | gcA | 1 | 15 | AY.6 | 0.000041 |
S | 163 | A163A | gcG | gcT | 10 | 15 | AY.9.2 | 0.000367 |
S | 163 | A163A | gcG | gcA | 3 | 15 | AY.9.2 | 0.00011 |
S | 163 | A163A | gcG | gcC | 2 | 15 | AY.9.2 | 0.000073 |
S | 163 | A163A | gcG | gcT | 15 | 15 | B.1.1.25 | 0.008528 |
S | 163 | A163A | gcG | gcT | 14 | 14 | AY.9 | 0.000946 |
S | 163 | A163A | gcG | gcC | 10 | 13 | B.1.177.81 | 0.001893 |
S | 163 | A163A | gcG | gcT | 2 | 13 | B.1.177.81 | 0.000379 |
S | 163 | A163A | gcG | gcA | 1 | 13 | B.1.177.81 | 0.000189 |
S | 163 | A163A | gcG | gcT | 8 | 13 | B.1.429 | 0.000188 |
S | 163 | A163A | gcG | gcA | 5 | 13 | B.1.429 | 0.000118 |
S | 163 | A163A | gcG | gcT | 11 | 11 | C.37 | 0.001277 |
S | 163 | A163A | gcG | gcT | 9 | 10 | AY.26 | 0.000255 |
S | 163 | A163A | gcG | gcC | 1 | 10 | AY.26 | 0.000028 |
S | 163 | A163A | gcG | gcT | 9 | 10 | B.1.221 | 0.000639 |
S | 163 | A163A | gcG | gcC | 1 | 10 | B.1.221 | 0.000071 |
S | 163 | A163A | gcG | gcA | 5 | 10 | P.2 | 0.000933 |
S | 163 | A163A | gcG | gcT | 5 | 10 | P.2 | 0.000933 |
S | 163 | A163A | gcG | gcT | 9 | 9 | B.1.210 | 0.01919 |
S | 163 | A163A | gcG | gcT | 8 | 8 | AY.119 | 0.000282 |
S | 163 | A163A | gcG | gcT | 8 | 8 | AY.34 | 0.000776 |
S | 163 | A163A | gcG | gcA | 8 | 8 | B.1.177.58 | 0.010652 |
S | 163 | A163A | gcG | gcT | 4 | 8 | P.1.15 | 0.000929 |
S | 163 | A163A | gcG | gcA | 4 | 8 | P.1.15 | 0.000929 |
S | 163 | A163A | gcG | gcT | 6 | 7 | AY.45 | 0.00073 |
S | 163 | A163A | gcG | gcC | 1 | 7 | AY.45 | 0.000122 |
S | 163 | A163A | gcG | gcT | 5 | 7 | AY.69 | 0.000933 |
S | 163 | A163A | gcG | gcC | 1 | 7 | AY.69 | 0.000187 |
S | 163 | A163A | gcG | gcA | 1 | 7 | AY.69 | 0.000187 |
S | 163 | A163A | gcG | gcT | 6 | 7 | B.1.351 | 0.000178 |
S | 163 | A163A | gcG | gcA | 1 | 7 | B.1.351 | 0.00003 |
S | 163 | A163A | gcG | gcT | 7 | 7 | B.1.575 | 0.002124 |
S | 163 | A163A | gcG | gcT | 6 | 6 | AY.117 | 0.000507 |
S | 163 | A163A | gcG | gcT | 5 | 6 | AY.23 | 0.000349 |
S | 163 | A163A | gcG | gcC | 1 | 6 | AY.23 | 0.00007 |
S | 163 | A163A | gcG | gcT | 5 | 6 | AY.99.2 | 0.000461 |
S | 163 | A163A | gcG | gcA | 1 | 6 | AY.99.2 | 0.000092 |
S | 163 | A163A | gcG | gcT | 6 | 6 | B.1.1.398 | 0.019355 |
S | 163 | A163A | gcG | gcT | 6 | 6 | B.1.243 | 0.000418 |
S | 163 | A163A | gcG | gcT | 5 | 6 | B.1.526 | 0.000118 |
S | 163 | A163A | gcG | gcA | 1 | 6 | B.1.526 | 0.000024 |
S | 163 | A163A | gcG | gcT | 4 | 5 | AY.4.5 | 0.00043 |
S | 163 | A163A | gcG | gcC | 1 | 5 | AY.4.5 | 0.000107 |
S | 163 | A163A | gcG | gcT | 4 | 5 | AY.46.6 | 0.000289 |
S | 163 | A163A | gcG | gcA | 1 | 5 | AY.46.6 | 0.000072 |
S | 163 | A163A | gcG | gcT | 5 | 5 | B.1.1.311 | 0.001791 |
S | 163 | A163A | gcG | gcA | 4 | 5 | B.1.36.29 | 0.002069 |
S | 163 | A163A | gcG | gcT | 1 | 5 | B.1.36.29 | 0.000517 |
S | 163 | A163A | gcG | gcT | 5 | 5 | B.1.397 | 0.024272 |
S | 163 | A163A | gcG | gcT | 5 | 5 | B.1.427 | 0.000252 |
S | 163 | A163A | gcG | gcT | 5 | 5 | B.1.568 | 0.005556 |
S | 163 | A163A | gcG | gcT | 4 | 4 | AY.100 | 0.000184 |
S | 163 | A163A | gcG | gcT | 2 | 4 | AY.102 | 0.000053 |
S | 163 | A163A | gcG | gcC | 1 | 4 | AY.102 | 0.000027 |
S | 163 | A163A | gcG | gcA | 1 | 4 | AY.102 | 0.000027 |
S | 163 | A163A | gcG | gcT | 3 | 4 | AY.121 | 0.000406 |
S | 163 | A163A | gcG | gcC | 1 | 4 | AY.121 | 0.000135 |
S | 163 | A163A | gcG | gcT | 3 | 4 | AY.14 | 0.000264 |
S | 163 | A163A | gcG | gcA | 1 | 4 | AY.14 | 0.000088 |
S | 163 | A163A | gcG | gcT | 4 | 4 | AY.16.1 | 0.00188 |
S | 163 | A163A | gcG | gcT | 3 | 4 | AY.20 | 0.000117 |
S | 163 | A163A | gcG | gcA | 1 | 4 | AY.20 | 0.000039 |
S | 163 | A163A | gcG | gcT | 3 | 4 | AY.29 | 0.000047 |
S | 163 | A163A | gcG | gcA | 1 | 4 | AY.29 | 0.000016 |
S | 163 | A163A | gcG | gcT | 3 | 4 | AY.33 | 0.0002 |
S | 163 | A163A | gcG | gcC | 1 | 4 | AY.33 | 0.000067 |
S | 163 | A163A | gcG | gcT | 3 | 4 | AY.98 | 0.000237 |
S | 163 | A163A | gcG | gcC | 1 | 4 | AY.98 | 0.000079 |
S | 163 | A163A | gcG | gcT | 4 | 4 | B.1.1.1 | 0.001307 |
S | 163 | A163A | gcG | gcT | 3 | 4 | B.1.1.28 | 0.000934 |
S | 163 | A163A | gcG | gcC | 1 | 4 | B.1.1.28 | 0.000311 |
S | 163 | A163A | gcG | gcC | 4 | 4 | B.1.1.305 | 0.015444 |
S | 163 | A163A | gcG | gcT | 4 | 4 | B.1.240 | 0.000862 |
S | 163 | A163A | gcG | gcT | 4 | 4 | B.1.625 | 0.009412 |
S | 163 | A163A | gcG | gcT | 3 | 3 | 0.166667 | |
S | 163 | A163A | gcG | gcC | 3 | 3 | AY.105 | 0.001929 |
S | 163 | A163A | gcG | gcT | 3 | 3 | AY.118 | 0.000188 |
S | 163 | A163A | gcG | gcT | 3 | 3 | AY.38 | 0.001498 |
S | 163 | A163A | gcG | gcT | 3 | 3 | AY.39.1 | 0.000119 |
S | 163 | A163A | gcG | gcT | 2 | 3 | AY.4.2 | 0.000043 |
S | 163 | A163A | gcG | gcA | 1 | 3 | AY.4.2 | 0.000022 |
S | 163 | A163A | gcG | gcT | 2 | 3 | AY.46 | 0.000208 |
S | 163 | A163A | gcG | gcC | 1 | 3 | AY.46 | 0.000104 |
S | 163 | A163A | gcG | gcC | 3 | 3 | AY.54 | 0.000286 |
S | 163 | A163A | gcG | gcT | 3 | 3 | AY.82 | 0.004071 |
S | 163 | A163A | gcG | gcT | 3 | 3 | B.1.1.176 | 0.001318 |
S | 163 | A163A | gcG | gcT | 3 | 3 | B.1.1.214 | 0.000166 |
S | 163 | A163A | gcG | gcT | 2 | 3 | B.1.1.33 | 0.000842 |
S | 163 | A163A | gcG | gcC | 1 | 3 | B.1.1.33 | 0.000421 |
S | 163 | A163A | gcG | gcT | 3 | 3 | B.1.258 | 0.0002 |
S | 163 | A163A | gcG | gcT | 3 | 3 | B.1.351.2 | 0.000908 |
S | 163 | A163A | gcG | gcT | 3 | 3 | B.1.389 | 0.003006 |
S | 163 | A163A | gcG | gcT | 3 | 3 | B.1.617.1 | 0.000387 |
S | 163 | A163A | gcG | gcC | 2 | 3 | B.1.628 | 0.000705 |
S | 163 | A163A | gcG | gcT | 1 | 3 | B.1.628 | 0.000352 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.1 | 0.000791 |
S | 163 | A163A | gcG | gcC | 2 | 2 | AY.108 | 0.002205 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.110 | 0.000225 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.120.1 | 0.000642 |
S | 163 | A163A | gcG | gcA | 2 | 2 | AY.24 | 0.000862 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.46.5 | 0.000397 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.55 | 0.001835 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.61 | 0.00021 |
S | 163 | A163A | gcG | gcT | 2 | 2 | AY.68 | 0.000547 |
S | 163 | A163A | gcG | gcT | 1 | 2 | AY.9.1 | 0.000084 |
S | 163 | A163A | gcG | gcC | 1 | 2 | AY.9.1 | 0.000084 |
S | 163 | A163A | gcG | gcC | 2 | 2 | AY.99 | 0.002099 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B | 0.000256 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.1.306 | 0.000877 |
S | 163 | A163A | gcG | gcA | 2 | 2 | B.1.1.57 | 0.022989 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.139 | 0.001466 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.177.2 | 0.009091 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.177.54 | 0.001213 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.177.56 | 0.001335 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.177.65 | 0.001331 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.177.7 | 0.00033 |
S | 163 | A163A | gcG | gcA | 2 | 2 | B.1.234 | 0.000264 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.239 | 0.002442 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.36.8 | 0.002 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.466.2 | 0.000782 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.1.471 | 0.005464 |
S | 163 | A163A | gcG | gcC | 2 | 2 | B.1.621 | 0.000177 |
S | 163 | A163A | gcG | gcT | 2 | 2 | B.40 | 0.000729 |
S | 163 | A163A | gcG | gcT | 2 | 2 | P.1.1 | 0.000635 |
S | 163 | A163A | gcG | gcC | 1 | 2 | P.1.7 | 0.000319 |
S | 163 | A163A | gcG | gcT | 1 | 2 | P.1.7 | 0.000319 |
S | 163 | A163A | gcG | gcA | 1 | 1 | A | 0.000387 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AD.2 | 0.000219 |
S | 163 | A163A | gcG | gcA | 1 | 1 | AY.101 | 0.00049 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.104 | 0.001984 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.106 | 0.000335 |
S | 163 | A163A | gcG | gcC | 1 | 1 | AY.113 | 0.000142 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.12 | 0.000316 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.16 | 0.00038 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.19 | 0.00114 |
S | 163 | A163A | gcG | gcC | 1 | 1 | AY.23.1 | 0.000417 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.28 | 0.00189 |
S | 163 | A163A | gcG | gcA | 1 | 1 | AY.3.1 | 0.000085 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.30 | 0.000396 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.37 | 0.000316 |
S | 163 | A163A | gcG | gcC | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 163 | A163A | gcG | gcC | 1 | 1 | AY.4.3 | 0.000842 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.4.4 | 0.000409 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.41 | 0.000294 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.46.2 | 0.000635 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.48 | 0.000465 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.5.3 | 0.000337 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.52 | 0.000814 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.60 | 0.000938 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.65 | 0.000533 |
S | 163 | A163A | gcG | gcC | 1 | 1 | AY.7 | 0.000196 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.70 | 0.000209 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.71 | 0.000475 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.75.1 | 0.00018 |
S | 163 | A163A | gcG | gcA | 1 | 1 | AY.8 | 0.000606 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.86 | 0.00083 |
S | 163 | A163A | gcG | gcC | 1 | 1 | AY.88 | 0.000884 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.89 | 0.004902 |
S | 163 | A163A | gcG | gcT | 1 | 1 | AY.95 | 0.000761 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.222 | 0.000204 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.263 | 0.001558 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.318 | 0.000302 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.37 | 0.000193 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.375 | 0.011905 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.486 | 0.001577 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.521 | 0.005348 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.523 | 0.001563 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.70 | 0.000341 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.1.97 | 0.029412 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.147 | 0.000756 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.12 | 0.000152 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.16 | 0.000664 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.21 | 0.000076 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.4 | 0.000211 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.6 | 0.000977 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.83 | 0.001481 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.177.86 | 0.000183 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.212 | 0.016667 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.214 | 0.003663 |
S | 163 | A163A | gcG | gcA | 1 | 1 | B.1.260 | 0.003344 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.367 | 0.000792 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.369 | 0.000285 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.381 | 0.007812 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.404 | 0.001302 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.468 | 0.005714 |
S | 163 | A163A | gcG | gcA | 1 | 1 | B.1.469 | 0.00361 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.525 | 0.000113 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.574 | 0.002151 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.596 | 0.000087 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.612 | 0.002653 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.617.3 | 0.002985 |
S | 163 | A163A | gcG | gcC | 1 | 1 | B.1.630 | 0.005236 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.1.83 | 0.015385 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.3 | 0.000831 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.35 | 0.007812 |
S | 163 | A163A | gcG | gcA | 1 | 1 | B.6 | 0.00091 |
S | 163 | A163A | gcG | gcT | 1 | 1 | B.6.6 | 0.000889 |
S | 163 | A163A | gcG | gcT | 1 | 1 | D.2 | 0.000075 |
S | 163 | A163A | gcG | gcT | 1 | 1 | N.1 | 0.016949 |
S | 163 | A163A | gcG | gcT | 1 | 1 | Q.3 | 0.000145 |
S | 163 | A163A | gcG | gcT | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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