CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = A1174V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1174A1174VnonsyngCtgTt9929890.99697625082-25084
S1174A1174VnonsyngCTgTC99220.0020161325082-25084
S1174A1174VnonsyngCTgTG99210.0010080625082-25084

Details of the mutation A1174V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1174A1174VgCtgTt989992All0.000189
S1174A1174VgCTgTC2992All0
S1174A1174VgCTgTG1992All0
S1174A1174VgCtgTt253253B.1.1.70.000226
S1174A1174VgCtgTt252252B.1.1770.003318
S1174A1174VgCtgTt6969AY.340.006691
S1174A1174VgCtgTt4040P.10.00063
S1174A1174VgCtgTt3333AY.440.000201
S1174A1174VgCtgTt3232B.1.2430.002227
S1174A1174VgCtgTt3030AY.1030.000186
S1174A1174VgCtgTt2525B.1.20.00022
S1174A1174VgCtgTt2121AY.40.000033
S1174A1174VgCtgTt2020AY.250.00012
S1174A1174VgCtgTt1414AY.200.000544
S1174A1174VgCtgTt1212B.1.617.20.000045
S1174A1174VgCtgTt1111AY.470.000342
S1174A1174VgCtgTt1111B.10.000101
S1174A1174VgCtgTt99AY.430.00004
S1174A1174VgCtgTt77A.220.466667
S1174A1174VgCtgTt55AY.30.00005
S1174A1174VgCtgTt55AY.420.000201
S1174A1174VgCtgTt55AY.690.000933
S1174A1174VgCtgTt45B0.000511
S1174A1174VgCTgTC15B0.000128
S1174A1174VgCtgTt55B.1.10.000091
S1174A1174VgCtgTt55B.1.1.2840.000537
S1174A1174VgCtgTt55B.1.2340.00066
S1174A1174VgCtgTt44AY.120.20.005141
S1174A1174VgCtgTt44B.1.2580.000266
S1174A1174VgCtgTt44B.1.4290.000094
S1174A1174VgCtgTt44B.1.5170.001708
S1174A1174VgCtgTt44B.1.617.10.000516
S1174A1174VgCtgTt44P.1.120.001936
S1174A1174VgCTgTG130.055556
S1174A1174VgCTgTC130.055556
S1174A1174VgCtgTt130.055556
S1174A1174VgCtgTt33AY.1020.00008
S1174A1174VgCtgTt33AY.1180.000188
S1174A1174VgCtgTt33AY.50.000062
S1174A1174VgCtgTt33AY.99.20.000276
S1174A1174VgCtgTt33B.1.1.5190.000119
S1174A1174VgCtgTt33B.1.177.810.000568
S1174A1174VgCtgTt33B.1.1990.012397
S1174A1174VgCtgTt33B.1.5960.000261
S1174A1174VgCtgTt22AY.1200.000074
S1174A1174VgCtgTt22AY.290.000032
S1174A1174VgCtgTt22AY.330.000134
S1174A1174VgCtgTt22AY.390.000049
S1174A1174VgCtgTt22AY.4.2.10.000298
S1174A1174VgCtgTt22AY.680.000547
S1174A1174VgCtgTt22AY.9.10.000167
S1174A1174VgCtgTt22B.1.1.370.000386
S1174A1174VgCtgTt22P.1.150.000465
S1174A1174VgCtgTt22Q.30.00029
S1174A1174VgCtgTt22Q.80.00033
S1174A1174VgCtgTt11A0.000387
S1174A1174VgCtgTt11A.2.40.003367
S1174A1174VgCtgTt11AY.10.000396
S1174A1174VgCtgTt11AY.1190.000035
S1174A1174VgCtgTt11AY.1210.000135
S1174A1174VgCtgTt11AY.160.00038
S1174A1174VgCtgTt11AY.230.00007
S1174A1174VgCtgTt11AY.260.000028
S1174A1174VgCtgTt11AY.34.10.00051
S1174A1174VgCtgTt11AY.360.000148
S1174A1174VgCtgTt11AY.39.10.00004
S1174A1174VgCtgTt11AY.4.20.000022
S1174A1174VgCtgTt11AY.4.50.000107
S1174A1174VgCtgTt11AY.460.000104
S1174A1174VgCtgTt11AY.46.40.000165
S1174A1174VgCtgTt11AY.46.60.000072
S1174A1174VgCtgTt11AY.610.000105
S1174A1174VgCtgTt11AY.670.000464
S1174A1174VgCtgTt11AY.75.10.00018
S1174A1174VgCtgTt11AY.880.000884
S1174A1174VgCtgTt11AY.9.20.000037
S1174A1174VgCtgTt11AY.98.10.000048
S1174A1174VgCtgTt11B.1.1.2050.003717
S1174A1174VgCtgTt11B.1.1.2140.000055
S1174A1174VgCtgTt11B.1.1.250.000569
S1174A1174VgCtgTt11B.1.1.3060.000438
S1174A1174VgCtgTt11B.1.1.3970.002252
S1174A1174VgCtgTt11B.1.1.4320.001266
S1174A1174VgCtgTt11B.1.1470.000756
S1174A1174VgCtgTt11B.1.1600.000031
S1174A1174VgCtgTt11B.1.258.170.000104
S1174A1174VgCtgTt11B.1.3510.00003
S1174A1174VgCtgTt11B.1.36.290.000517
S1174A1174VgCtgTt11B.1.3670.000792
S1174A1174VgCtgTt11B.1.438.10.000107
S1174A1174VgCtgTt11B.1.5160.001957
S1174A1174VgCtgTt11B.1.5600.00463
S1174A1174VgCtgTt11B.1.6210.000089
S1174A1174VgCtgTt11B.1.6300.005236
S1174A1174VgCtgTt11C.110.010638
S1174A1174VgCtgTt11C.180.002591
S1174A1174VgCtgTt11C.370.000116
S1174A1174VgCtgTt11N.50.001767
S1174A1174VgCtgTt11P.1.140.000048
S1174A1174VgCtgTt11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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