CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = A1174T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1174A1174TnonsynGctAct20180.925082-25084
S1174A1174TnonsynGcTAcC2010.0525082-25084
S1174A1174TnonsynGcTAcG2010.0525082-25084

Details of the mutation A1174T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1174A1174TGctAct1820All0.000003
S1174A1174TGcTAcC120All0
S1174A1174TGcTAcG120All0
S1174A1174TGctAct66AY.98.10.000291
S1174A1174TGctAct24B.1.617.20.000008
S1174A1174TGcTAcC14B.1.617.20.000004
S1174A1174TGcTAcG14B.1.617.20.000004
S1174A1174TGctAct22AY.470.000062
S1174A1174TGctAct11AY.1020.000027
S1174A1174TGctAct11AY.260.000028
S1174A1174TGctAct11AY.3.10.000085
S1174A1174TGctAct11AY.40.000002
S1174A1174TGctAct11AY.420.00004
S1174A1174TGctAct11B.10.000009
S1174A1174TGctAct11B.1.1.70.000001
S1174A1174TGctAct11B.1.6090.000479

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.