CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = A1078S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1078A1078SnonsynGctTct19682196810.99994924794-24796
S1078A1078SnonsynGcTTcC1968210.000050807824794-24796

Details of the mutation A1078S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1078A1078SGctTct1968119682All0.003764
S1078A1078SGcTTcC119682All0
S1078A1078SGctTct72247224AY.40.011244
S1078A1078SGctTct23192319B.1.617.20.008732
S1078A1078SGctTct14271427AY.430.006322
S1078A1078SGctTct13011301B.1.1770.017131
S1078A1078SGctTct898898B.1.1.70.000804
S1078A1078SGctTct486486AY.280.918715
S1078A1078SGctTct464464AY.1030.002881
S1078A1078SGctTct408408B.1.10.007401
S1078A1078SGctTct278278B.1.1600.00867
S1078A1078SGctTct255255B.1.20.002245
S1078A1078SGctTct228228B.1.1.2220.046512
S1078A1078SGctTct226226B.10.00207
S1078A1078SGctTct223223B.1.5750.067658
S1078A1078SGctTct201201AY.60.008267
S1078A1078SGctTct176176AY.1020.004666
S1078A1078SGctTct175175AY.98.10.008475
S1078A1078SGctTct171171AY.30.001701
S1078A1078SGctTct148148AY.250.00089
S1078A1078SGctTct140140B.1.2210.009945
S1078A1078SGctTct116116AY.440.000706
S1078A1078SGctTct104104AY.1000.004785
S1078A1078SGctTct101101B.1.177.410.2525
S1078A1078SGctTct100100C.41
S1078A1078SGctTct8989B.1.360.012985
S1078A1078SGctTct8686AY.4.20.001865
S1078A1078SGctTct8282P.10.001292
S1078A1078SGctTct7878P.1.140.003728
S1078A1078SGctTct6868AY.390.00168
S1078A1078SGctTct6666B.1.3510.001962
S1078A1078SGctTct5959AY.1210.007984
S1078A1078SGctTct5959B.1.5960.005141
S1078A1078SGctTct5858AY.1200.002156
S1078A1078SGctTct5151AY.4.30.042929
S1078A1078SGctTct5050B.1.2420.943396
S1078A1078SGctTct5050B.1.5260.001175
S1078A1078SGctTct4646B.1.466.20.017997
S1078A1078SGctTct4444B.1.1.3180.013277
S1078A1078SGctTct4343AY.1130.006123
S1078A1078SGctTct4343AY.420.00173
S1078A1078SGctTct4242B.1.1.3841
S1078A1078SGctTct3737B.1.177.170.030378
S1078A1078SGctTct3636B.1.177.70.005935
S1078A1078SGctTct3434AY.460.003539
S1078A1078SGctTct3434AY.46.60.002455
S1078A1078SGctTct3333B.1.2430.002296
S1078A1078SGctTct3232AY.330.002137
S1078A1078SGctTct3131B.1.1.5190.001231
S1078A1078SGctTct2929B.1.6120.076923
S1078A1078SGctTct2727B.1.1.5120.771429
S1078A1078SGctTct2626AY.500.020783
S1078A1078SGctTct2525AY.980.001975
S1078A1078SGctTct2525B.1.2580.001664
S1078A1078SGctTct2424AY.710.011401
S1078A1078SGctTct2323AY.1090.017012
S1078A1078SGctTct2323AY.230.001604
S1078A1078SGctTct2323AY.260.000651
S1078A1078SGctTct2323B.1.1.560.410714
S1078A1078SGctTct2222AY.630.008511
S1078A1078SGctTct2222B.1.1.2360.151724
S1078A1078SGctTct2121B.1.2340.002771
S1078A1078SGctTct2121B.1.4270.00106
S1078A1078SGctTct2020AY.50.000413
S1078A1078SGctTct1919AY.1170.001606
S1078A1078SGctTct1919C.36.30.010777
S1078A1078SGctTct1818B.1.177.580.023968
S1078A1078SGctTct1616B.1.1.3170.006587
S1078A1078SGctTct1616B.1.36.290.008277
S1078A1078SGctTct1616B.1.4290.000376
S1078A1078SGctTct1515AY.1190.00053
S1078A1078SGctTct1515B.1.160.280.04386
S1078A1078SGctTct1414AY.470.000435
S1078A1078SGctTct1414C.370.001625
S1078A1078SGctTct1313B.1.1.3980.041935
S1078A1078SGctTct1212AY.1060.004019
S1078A1078SGctTct1212B.1.1.2140.000665
S1078A1078SGctTct1212B.1.1.2160.010686
S1078A1078SGctTct1212B.1.177.60.011719
S1078A1078SGctTct1212P.20.00224
S1078A1078SGctTct1111AY.450.001339
S1078A1078SGctTct1111AY.9.20.000404
S1078A1078SGctTct1111B.1.4560.035948
S1078A1078SGctTct1010AY.100.005299
S1078A1078SGctTct1010AY.1180.000626
S1078A1078SGctTct1010B.1.6210.000885
S1078A1078SGctTct99AY.1110.001648
S1078A1078SGctTct99AY.270.000582
S1078A1078SGctTct99AY.4.50.000967
S1078A1078SGctTct99P.1.100.002425
S1078A1078SGctTct88AY.200.000311
S1078A1078SGctTct88AY.290.000126
S1078A1078SGctTct88AY.350.001864
S1078A1078SGctTct88AY.850.003417
S1078A1078SGctTct88AY.99.20.000737
S1078A1078SGctTct88B.1.1.2200.01487
S1078A1078SGctTct77AY.1160.002007
S1078A1078SGctTct77AY.300.00277
S1078A1078SGctTct77AY.610.000733
S1078A1078SGctTct77AY.75.10.001262
S1078A1078SGctTct77AY.90.000473
S1078A1078SGctTct77B.1.1.280.002179
S1078A1078SGctTct77D.20.000525
S1078A1078SGctTct66A.2.5.30.061856
S1078A1078SGctTct66AY.3.10.000512
S1078A1078SGctTct66AY.590.003178
S1078A1078SGctTct66AY.720.008163
S1078A1078SGctTct66B.1.1.1870.053097
S1078A1078SGctTct66B.1.1.3720.004132
S1078A1078SGctTct66B.1.5250.000679
S1078A1078SGctTct55AY.39.10.000198
S1078A1078SGctTct55AY.410.00147
S1078A1078SGctTct55AY.540.000477
S1078A1078SGctTct55AY.880.004421
S1078A1078SGctTct55AY.990.005247
S1078A1078SGctTct55B.1.1.10.001633
S1078A1078SGctTct55B.1.1.1740.016892
S1078A1078SGctTct55B.1.1.2100.028571
S1078A1078SGctTct55B.1.177.430.007386
S1078A1078SGctTct55B.1.258.170.00052
S1078A1078SGctTct55B.1.3670.003962
S1078A1078SGctTct44AY.1050.002572
S1078A1078SGctTct44AY.1080.00441
S1078A1078SGctTct44AY.1140.000924
S1078A1078SGctTct44AY.130.000644
S1078A1078SGctTct44AY.16.10.00188
S1078A1078SGctTct44AY.34.10.00204
S1078A1078SGctTct44AY.46.40.000658
S1078A1078SGctTct44AY.5.40.001107
S1078A1078SGctTct44AY.530.00115
S1078A1078SGctTct44AY.600.003752
S1078A1078SGctTct44AY.820.005427
S1078A1078SGctTct44AY.920.001149
S1078A1078SGctTct44AY.960.008299
S1078A1078SGctTct44B0.000511
S1078A1078SGctTct44B.1.1.1890.006051
S1078A1078SGctTct44B.1.1.2370.021622
S1078A1078SGctTct44B.1.1.2770.003035
S1078A1078SGctTct44B.1.1.2800.012346
S1078A1078SGctTct44B.1.1.370.000771
S1078A1078SGctTct44B.1.1.500.002716
S1078A1078SGctTct44B.1.177.400.020619
S1078A1078SGctTct44B.1.177.810.000757
S1078A1078SGctTct44B.1.4160.005076
S1078A1078SGctTct44B.1.438.10.000429
S1078A1078SGctTct44B.1.5680.004444
S1078A1078SGctTct44B.1.5950.001044
S1078A1078SGctTct44B.1.617.10.000516
S1078A1078SGctTct44B.1.6250.009412
S1078A1078SGctTct44B.1.6370.000292
S1078A1078SGctTct44P.1.10.001271
S1078A1078SGctTct33AY.1040.005952
S1078A1078SGctTct33AY.120.2.10.001495
S1078A1078SGctTct33AY.340.000291
S1078A1078SGctTct33AY.360.000445
S1078A1078SGctTct33AY.370.000948
S1078A1078SGctTct33AY.550.002752
S1078A1078SGctTct33AY.700.000626
S1078A1078SGctTct33AY.740.000347
S1078A1078SGctTct33AY.790.003632
S1078A1078SGctTct33AY.860.00249
S1078A1078SGctTct33AY.9.10.000251
S1078A1078SGctTct33B.1.1.2940.003797
S1078A1078SGctTct33B.1.1660.025424
S1078A1078SGctTct33B.1.2410.002435
S1078A1078SGctTct33B.1.2790.001541
S1078A1078SGctTct33B.1.3360.007317
S1078A1078SGctTct33C.37.10.007853
S1078A1078SGctTct33P.1.170.000485
S1078A1078SGctTct33P.1.17.10.002625
S1078A1078SGctTct33Q.10.000379
S1078A1078SGctTct33Q.80.000495
S1078A1078SGctTct120.055556
S1078A1078SGcTTcC120.055556
S1078A1078SGctTct22A0.000774
S1078A1078SGctTct22AY.120.000632
S1078A1078SGctTct22AY.160.000759
S1078A1078SGctTct22AY.190.002281
S1078A1078SGctTct22AY.320.001065
S1078A1078SGctTct22AY.380.000999
S1078A1078SGctTct22AY.46.20.001271
S1078A1078SGctTct22AY.490.00639
S1078A1078SGctTct22AY.5.30.000675
S1078A1078SGctTct22AY.520.001629
S1078A1078SGctTct22AY.580.001815
S1078A1078SGctTct22AY.670.000929
S1078A1078SGctTct22AY.680.000547
S1078A1078SGctTct22AY.7.10.000225
S1078A1078SGctTct22AY.7.20.001119
S1078A1078SGctTct22AY.780.003082
S1078A1078SGctTct22AY.840.000875
S1078A1078SGctTct22AY.930.000546
S1078A1078SGctTct22AY.940.000885
S1078A1078SGctTct22B.1.1.1920.004619
S1078A1078SGctTct22B.1.1.2080.02439
S1078A1078SGctTct22B.1.1.2340.024096
S1078A1078SGctTct22B.1.1.2610.017241
S1078A1078SGctTct22B.1.1.2630.003115
S1078A1078SGctTct22B.1.1.3060.000877
S1078A1078SGctTct22B.1.1.3160.00185
S1078A1078SGctTct22B.1.1.3970.004505
S1078A1078SGctTct22B.1.1.4330.002849
S1078A1078SGctTct22B.1.1.5230.003125
S1078A1078SGctTct22B.1.1.630.000772
S1078A1078SGctTct22B.1.1.700.000682
S1078A1078SGctTct22B.1.1390.001466
S1078A1078SGctTct22B.1.177.450.000762
S1078A1078SGctTct22B.1.177.540.001213
S1078A1078SGctTct22B.1.177.750.002081
S1078A1078SGctTct22B.1.2400.000431
S1078A1078SGctTct22B.1.36.180.00084
S1078A1078SGctTct22B.1.36.80.002
S1078A1078SGctTct22B.1.3690.00057
S1078A1078SGctTct22B.1.4590.008163
S1078A1078SGctTct22B.1.5010.014706
S1078A1078SGctTct22B.1.5970.009259
S1078A1078SGctTct22B.1.6090.000959
S1078A1078SGctTct22B.400.000729
S1078A1078SGctTct22C.90.060606
S1078A1078SGctTct22P.70.008734
S1078A1078SGctTct11A.10.000282
S1078A1078SGctTct11A.2.5.20.001572
S1078A1078SGctTct11AD.20.000219
S1078A1078SGctTct11AE.30.032258
S1078A1078SGctTct11AY.1010.00049
S1078A1078SGctTct11AY.1100.000113
S1078A1078SGctTct11AY.120.10.000321
S1078A1078SGctTct11AY.120.20.001285
S1078A1078SGctTct11AY.20.000356
S1078A1078SGctTct11AY.210.001898
S1078A1078SGctTct11AY.23.10.000417
S1078A1078SGctTct11AY.4.2.10.000149
S1078A1078SGctTct11AY.4.40.000409
S1078A1078SGctTct11AY.400.000964
S1078A1078SGctTct11AY.480.000465
S1078A1078SGctTct11AY.510.000909
S1078A1078SGctTct11AY.620.000436
S1078A1078SGctTct11AY.650.000533
S1078A1078SGctTct11AY.690.000187
S1078A1078SGctTct11AY.70.000196
S1078A1078SGctTct11AY.750.000056
S1078A1078SGctTct11AY.770.001127
S1078A1078SGctTct11B.1.1.1130.006993
S1078A1078SGctTct11B.1.1.1570.000913
S1078A1078SGctTct11B.1.1.2050.003717
S1078A1078SGctTct11B.1.1.2070.001182
S1078A1078SGctTct11B.1.1.250.000569
S1078A1078SGctTct11B.1.1.2840.000107
S1078A1078SGctTct11B.1.1.3010.001179
S1078A1078SGctTct11B.1.1.3190.017544
S1078A1078SGctTct11B.1.1.3220.008772
S1078A1078SGctTct11B.1.1.3260.001761
S1078A1078SGctTct11B.1.1.330.000421
S1078A1078SGctTct11B.1.1.3480.000796
S1078A1078SGctTct11B.1.1.3630.005988
S1078A1078SGctTct11B.1.1.4040.015873
S1078A1078SGctTct11B.1.1.4160.000905
S1078A1078SGctTct11B.1.1.4170.002703
S1078A1078SGctTct11B.1.1.4190.007407
S1078A1078SGctTct11B.1.1.4340.000349
S1078A1078SGctTct11B.1.1.470.005348
S1078A1078SGctTct11B.1.1.5000.02
S1078A1078SGctTct11B.1.1.5210.005348
S1078A1078SGctTct11B.1.1.5260.003546
S1078A1078SGctTct11B.1.1.980.018519
S1078A1078SGctTct11B.1.110.30.000718
S1078A1078SGctTct11B.1.1110.001175
S1078A1078SGctTct11B.1.1310.008772
S1078A1078SGctTct11B.1.1430.021277
S1078A1078SGctTct11B.1.160.120.00641
S1078A1078SGctTct11B.1.177.30.007634
S1078A1078SGctTct11B.1.177.310.011494
S1078A1078SGctTct11B.1.177.320.00135
S1078A1078SGctTct11B.1.177.330.001645
S1078A1078SGctTct11B.1.177.40.000211
S1078A1078SGctTct11B.1.177.420.000894
S1078A1078SGctTct11B.1.177.630.002703
S1078A1078SGctTct11B.1.177.730.000566
S1078A1078SGctTct11B.1.177.80.000752
S1078A1078SGctTct11B.1.177.840.006667
S1078A1078SGctTct11B.1.177.860.000183
S1078A1078SGctTct11B.1.1780.02381
S1078A1078SGctTct11B.1.2140.003663
S1078A1078SGctTct11B.1.2650.001271
S1078A1078SGctTct11B.1.3110.000275
S1078A1078SGctTct11B.1.351.20.000303
S1078A1078SGctTct11B.1.36.190.009259
S1078A1078SGctTct11B.1.36.210.00216
S1078A1078SGctTct11B.1.36.220.001208
S1078A1078SGctTct11B.1.36.310.001751
S1078A1078SGctTct11B.1.36.370.002778
S1078A1078SGctTct11B.1.3950.007042
S1078A1078SGctTct11B.1.3970.004854
S1078A1078SGctTct11B.1.3980.002976
S1078A1078SGctTct11B.1.3990.001934
S1078A1078SGctTct11B.1.4020.009804
S1078A1078SGctTct11B.1.4260.001009
S1078A1078SGctTct11B.1.428.30.012821
S1078A1078SGctTct11B.1.4320.011236
S1078A1078SGctTct11B.1.4970.000315
S1078A1078SGctTct11B.1.5030.002488
S1078A1078SGctTct11B.1.5070.011236
S1078A1078SGctTct11B.1.5490.007194
S1078A1078SGctTct11B.1.5610.000397
S1078A1078SGctTct11B.1.5820.000491
S1078A1078SGctTct11B.1.619.10.000641
S1078A1078SGctTct11B.1.6200.000946
S1078A1078SGctTct11B.1.621.10.000506
S1078A1078SGctTct11B.1.6280.000352
S1078A1078SGctTct11B.1.6290.013333
S1078A1078SGctTct11B.1.6340.003425
S1078A1078SGctTct11B.4.10.018868
S1078A1078SGctTct11B.6.80.008264
S1078A1078SGctTct11C.10.002392
S1078A1078SGctTct11C.260.007353
S1078A1078SGctTct11P.1.120.000484
S1078A1078SGctTct11P.1.130.000898
S1078A1078SGctTct11P.1.150.000232
S1078A1078SGctTct11P.1.70.000319
S1078A1078SGctTct11P.1.90.004808
S1078A1078SGctTct11Q.30.000145
S1078A1078SGctTct11Q.70.001111
S1078A1078SGctTct11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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