CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 996

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S996L996LsynttGttA4123390.82281624548-24550
S996L996LsynTtgCtg412730.17718424548-24550
S996L996deldelTTG---3535124548-24550
S996L996FnonsynttGttT24190.79166724548-24550
S996L996FnonsynttGttC2450.20833324548-24550
S996L996SnonsyntTgtCg88124548-24550
S996L996KnonsynTTgAAg33124548-24550
S996L996MnonsynTtgAtg22124548-24550
S996L996PnonsynTTgCCg22124548-24550
S996L996VnonsynTtgGtg22124548-24550
S996L996WnonsyntTgtGg11124548-24550
S996L996RnonsynTTGCGA11124548-24550
S996L996XnonsyntTgtAg11124548-24550

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S996L996LttGttA339412All0.000065
S996L996LTtgCtg73412All0.000014
S996L996LttGttA141141B.1.617.20.000531
S996L996LttGttA4646AY.1020.00122
S996L996delTTG---3535All0.000007
S996L996LttGttA3232B.1.1610.551724
S996L996LTtgCtg2828B.1.5640.011925
S996L996FttGttT1924All0.000004
S996L996FttGttC524All0.000001
S996L996LttGttA2124AY.40.000033
S996L996LTtgCtg324AY.40.000005
S996L996LttGttA1313AY.290.000205
S996L996LTtgCtg1212B.1.3690.003423
S996L996LttGttA910B.1.1.70.000008
S996L996LTtgCtg110B.1.1.70.000001
S996L996LTtgCtg89AY.30.00008
S996L996LttGttA19AY.30.00001
S996L996LTtgCtg89B.10.000073
S996L996LttGttA19B.10.000009
S996L996StTgtCg88All0.000002
S996L996LttGttA88AY.4.2.10.001192
S996L996LttGttA58AY.430.000022
S996L996LTtgCtg38AY.430.000013
S996L996delTTG---77B.1.1.70.000006
S996L996LttGttA45AY.440.000024
S996L996LTtgCtg15AY.440.000006
S996L996LttGttA55B.1.4290.000118
S996L996FttGttT44B.10.000037
S996L996KTTgAAg33All0.000001
S996L996LttGttA33AY.390.000074
S996L996FttGttT33AY.430.000013
S996L996LttGttA33AY.46.30.002801
S996L996StTgtCg33B.10.000027
S996L996delTTG---33B.10.000027
S996L996LttGttA33B.1.10.000054
S996L996LttGttA33B.1.1.1920.006928
S996L996delTTG---33B.1.1770.00004
S996L996MTtgAtg22All0
S996L996VTtgGtg22All0
S996L996PTTgCCg22All0
S996L996LttGttA22AY.1030.000012
S996L996LttGttA22AY.1190.000071
S996L996FttGttT22B0.000256
S996L996FttGttT12B.1.10.000018
S996L996FttGttC12B.1.10.000018
S996L996LttGttA22B.1.1.3260.003521
S996L996PTTgCCg22B.1.1.70.000002
S996L996FttGttC12B.1.1.70.000001
S996L996FttGttT12B.1.1.70.000001
S996L996LTtgCtg12B.1.1770.000013
S996L996LttGttA12B.1.1770.000013
S996L996LttGttA22B.1.2340.000264
S996L996LttGttA22B.1.360.000292
S996L996LttGttA22B.1.617.10.000258
S996L996LttGttA22P.10.000032
S996L996FttGttT11A0.000387
S996L996RTTGCGA11All0
S996L996WtTgtGg11All0
S996L996XtTgtAg11All0
S996L996LttGttA11AU.10.001266
S996L996LttGttA11AY.1060.000335
S996L996LttGttA11AY.1170.000085
S996L996LttGttA11AY.1180.000063
S996L996delTTG---11AY.1200.000037
S996L996LttGttA11AY.1200.000037
S996L996LttGttA11AY.130.000161
S996L996LttGttA11AY.330.000067
S996L996delTTG---11AY.330.000067
S996L996StTgtCg11AY.360.000148
S996L996FttGttC11AY.40.000002
S996L996LttGttA11AY.4.20.000022
S996L996delTTG---11AY.4.50.000107
S996L996LttGttA11AY.420.00004
S996L996FttGttT11AY.420.00004
S996L996delTTG---11AY.430.000004
S996L996MTtgAtg11AY.430.000004
S996L996StTgtCg11AY.430.000004
S996L996LttGttA11AY.450.000122
S996L996LttGttA11AY.460.000104
S996L996delTTG---11AY.50.000021
S996L996LttGttA11AY.50.000021
S996L996FttGttT11AY.520.000814
S996L996LttGttA11AY.520.000814
S996L996LttGttA11AY.550.000917
S996L996LttGttA11AY.590.00053
S996L996delTTG---11AY.680.000274
S996L996delTTG---11AY.810.001992
S996L996LttGttA11AY.880.000884
S996L996LTtgCtg11AY.930.000273
S996L996LTtgCtg11AY.980.000079
S996L996MTtgAtg11B.10.000009
S996L996StTgtCg11B.1.10.000018
S996L996WtTgtGg11B.1.10.000018
S996L996VTtgGtg11B.1.10.000018
S996L996LttGttA11B.1.1.2220.000204
S996L996delTTG---11B.1.1.2360.006897
S996L996delTTG---11B.1.1.3120.001912
S996L996delTTG---11B.1.1.3150.008475
S996L996KTTgAAg11B.1.1.3150.008475
S996L996KTTgAAg11B.1.1.3260.001761
S996L996LTtgCtg11B.1.1.370.000193
S996L996LttGttA11B.1.1.390.00051
S996L996KTTgAAg11B.1.1.70.000001
S996L996StTgtCg11B.1.1.70.000001
S996L996VTtgGtg11B.1.1.70.000001
S996L996delTTG---11B.1.1400.018868
S996L996LttGttA11B.1.1600.000031
S996L996LTtgCtg11B.1.160.140.002119
S996L996delTTG---11B.1.177.40.000211
S996L996delTTG---11B.1.177.50.001242
S996L996delTTG---11B.1.177.620.001192
S996L996delTTG---11B.1.177.630.002703
S996L996FttGttC11B.1.20.000009
S996L996delTTG---11B.1.20.000009
S996L996FttGttT11B.1.3010.005917
S996L996LttGttA11B.1.3110.000275
S996L996LTtgCtg11B.1.3510.00003
S996L996delTTG---11B.1.36.170.000494
S996L996XtTgtAg11B.1.36.180.00042
S996L996LttGttA11B.1.36.340.021277
S996L996LttGttA11B.1.4160.001269
S996L996LttGttA11B.1.5260.000024
S996L996LTtgCtg11B.1.5330.009615
S996L996LttGttA11B.1.5610.000397
S996L996delTTG---11B.1.5850.027778
S996L996FttGttT11B.1.5950.000261
S996L996LTtgCtg11B.1.6090.000479
S996L996FttGttT11B.1.617.10.000129
S996L996delTTG---11B.1.617.20.000004
S996L996FttGttC11B.1.617.20.000004
S996L996FttGttT11B.60.00091
S996L996RTTGCGA11B.6.60.000889
S996L996delTTG---11C.370.000116
S996L996StTgtCg11D.20.000075
S996L996delTTG---11P.10.000016
S996L996FttGttT11P.10.000016
S996L996LttGttA11P.1.150.000232
S996L996LTtgCtg11P.1.160.000374
S996L996delTTG---11Q.10.000126
S996L996LttGttA11Q.30.000145