CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 989 & Codon = gcC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S989A989AsyngcTgcC2522310.91666724527-24529

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S989A989AgcTgcC231252All0.000044
S989A989AgcTgcC3538AY.250.000211
S989A989AgcTgcC2222B.1.1460.09322
S989A989AgcTgcC1318B.1.1.70.000012
S989A989AgcTgcC1717B.1.1.2160.015138
S989A989AgcTgcC1414B.1.617.20.000053
S989A989AgcTgcC1313AY.30.000129
S989A989AgcTgcC1012AY.40.000016
S989A989AgcTgcC1010P.1.40.009766
S989A989AgcTgcC99AY.39.10.000357
S989A989AgcTgcC77B.10.000064
S989A989AgcTgcC77B.1.1770.000092
S989A989AgcTgcC77B.1.350.11
S989A989AgcTgcC55AE.80.002445
S989A989AgcTgcC55B.1.1.3180.001509
S989A989AgcTgcC55B.1.20.000044
S989A989AgcTgcC44AY.430.000018
S989A989AgcTgcC44B.1.3510.000119
S989A989AgcTgcC13AY.1030.000006
S989A989AgcTgcC33AY.330.0002
S989A989AgcTgcC33AY.390.000074
S989A989AgcTgcC23B.1.10.000036
S989A989AgcTgcC33P.1.140.000143
S989A989AgcTgcC22AY.1060.00067
S989A989AgcTgcC22AY.200.000078
S989A989AgcTgcC22AY.4.20.000043
S989A989AgcTgcC22AY.50.000041
S989A989AgcTgcC22AY.610.00021
S989A989AgcTgcC12B.1.1.5190.00004
S989A989AgcTgcC22B.1.4270.000101
S989A989AgcTgcC11AY.1200.000037
S989A989AgcTgcC11AY.1210.000135
S989A989AgcTgcC11AY.240.000431
S989A989AgcTgcC11AY.260.000028
S989A989AgcTgcC11AY.3.10.000085
S989A989AgcTgcC11AY.440.000006
S989A989AgcTgcC11AY.460.000104
S989A989AgcTgcC11AY.540.000095
S989A989AgcTgcC11AY.550.000917
S989A989AgcTgcC11AY.60.000041
S989A989AgcTgcC11AY.730.000665
S989A989AgcTgcC11AY.75.10.00018
S989A989AgcTgcC11B.1.1.390.00051
S989A989AgcTgcC11B.1.3200.001245
S989A989AgcTgcC11B.1.5610.000397
S989A989AgcTgcC11B.1.5750.000303
S989A989AgcTgcC11B.1.5950.000261
S989A989AgcTgcC11D.20.000075
S989A989AgcTgcC11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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