CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 982

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S982S982AnonsynTcaGca113942811394180.99999124506-24508
S982S982AnonsynTcAGcG113942880.0000070210724506-24508
S982S982AnonsynTcAGcT113942810.00000087763324506-24508
S982S982AnonsynTcAGcC113942810.00000087763324506-24508
S982S982LnonsyntCatTa375375124506-24508
S982S982SsyntcAtcG3673390.92370624506-24508
S982S982SsyntcAtcT367190.051771124506-24508
S982S982SsyntcAtcC36790.024523224506-24508
S982S982deldelTCA---4242124506-24508
S982S982PnonsynTcaCca1111124506-24508
S982S982TnonsynTcaAca66124506-24508
S982S982XnonsyntCatAa55124506-24508
S982S982VnonsynTCaGTa33124506-24508
S982S982del2delTCa--a210.524506-24508
S982S982del1delTca-ca210.524506-24508
S982S982del1deltcAtc-210.524506-24508
S982S982del2delTCAC--210.524506-24508
S982S982EnonsynTCaGAa11124506-24508
S982S982GnonsynTCaGGa11124506-24508

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S982S982ATcaGca11394181139428All0.217927
S982S982ATcAGcG81139428All0.000002
S982S982ATcAGcC11139428All0
S982S982ATcAGcT11139428All0
S982S982ATcaGca11134231113433B.1.1.70.996762
S982S982ATcAGcG81113433B.1.1.70.000007
S982S982ATcAGcC11113433B.1.1.70.000001
S982S982ATcAGcT11113433B.1.1.70.000001
S982S982ATcaGca77047704Q.10.973219
S982S982ATcaGca68536853Q.30.993909
S982S982ATcaGca29262926B.1.10.05308
S982S982ATcaGca21132113Q.40.960891
S982S982ATcaGca16261626Q.20.997546
S982S982ATcaGca13771377B.10.012613
S982S982ATcaGca900900Q.71
S982S982ATcaGca510510B.1.177.730.288788
S982S982LtCatTa375375All0.000072
S982S982StcAtcG339367All0.000065
S982S982StcAtcT19367All0.000004
S982S982StcAtcC9367All0.000002
S982S982ATcaGca336336Q.80.055409
S982S982ATcaGca237237B.1.3750.194262
S982S982StcAtcG222223AY.440.001351
S982S982StcAtcC1223AY.440.000006
S982S982LtCatTa170170AY.40.000265
S982S982ATcaGca151151Q.61
S982S982LtCatTa128128B.1.415.10.969697
S982S982ATcaGca9393B.1.177.70.015331
S982S982ATcaGca7373B.1.2210.005185
S982S982ATcaGca7272P.10.001134
S982S982StcAtcG6161AY.250.000367
S982S982ATcaGca6060B.1.617.20.000226
S982S982ATcaGca5959Q.51
S982S982ATcaGca5656B.1.5260.001316
S982S982ATcaGca5252B.1.1770.000685
S982S982ATcaGca4646AY.300.018203
S982S982ATcaGca4545XA1
S982S982ATcaGca4343B.1.20.000379
S982S982delTCA---4242All0.000008
S982S982ATcaGca3333B.1.1.4090.093484
S982S982ATcaGca3232AY.1030.000199
S982S982ATcaGca3030AY.440.000183
S982S982LtCatTa2828B.1.5260.000658
S982S982ATcaGca2626AY.260.000736
S982S982ATcaGca2626B.1.5960.002266
S982S982ATcaGca2525AY.430.000111
S982S982ATcaGca2525P.1.160.009353
S982S982ATcaGca2424AY.290.000379
S982S982ATcaGca1919AY.1180.00119
S982S982StcAtcG1819AY.40.000028
S982S982StcAtcC119AY.40.000002
S982S982ATcaGca1919P.1.10.006036
S982S982ATcaGca1717AY.40.000026
S982S982ATcaGca1616B.1.3510.000476
S982S982ATcaGca1515B.1.1.5070.130435
S982S982ATcaGca1414B0.001789
S982S982ATcaGca1414B.1.5760.012693
S982S982delTCA---1313B.1.1.70.000012
S982S982ATcaGca1313B.1.617.10.001677
S982S982ATcaGca1313P.1.170.002103
S982S982ATcaGca11110.611111
S982S982PTcaCca1111All0.000002
S982S982ATcaGca1010B.1.1.1610.035336
S982S982ATcaGca1010B.1.621.10.005058
S982S982StcAtcT59AY.1030.000031
S982S982StcAtcG29AY.1030.000012
S982S982StcAtcC29AY.1030.000012
S982S982ATcaGca99AY.230.000628
S982S982ATcaGca99AY.420.000362
S982S982ATcaGca99AY.680.002464
S982S982ATcaGca99B.1.4110.033333
S982S982ATcaGca99C.36.30.005105
S982S982ATcaGca88AY.75.10.001442
S982S982ATcaGca88B.1.5950.002088
S982S982StcAtcG78B.1.617.20.000026
S982S982StcAtcT18B.1.617.20.000004
S982S982ATcaGca77B.1.1.5190.000278
S982S982TTcaAca66All0.000001
S982S982ATcaGca66AY.390.000148
S982S982ATcaGca66B.1.6230.003219
S982S982StcAtcT46D.20.0003
S982S982StcAtcC16D.20.000075
S982S982StcAtcG16D.20.000075
S982S982XtCatAa55All0.000001
S982S982LtCatTa55AY.430.000022
S982S982StcAtcG55AY.75.10.000902
S982S982ATcaGca55B.1.1570.014925
S982S982ATcaGca55B.1.1600.000156
S982S982ATcaGca55B.1.4290.000118
S982S982ATcaGca55B.1.6280.001762
S982S982ATcaGca55P.1.140.000239
S982S982ATcaGca44AY.9.20.000147
S982S982ATcaGca44B.1.1.2200.007435
S982S982ATcaGca44B.1.2060.003263
S982S982ATcaGca44B.1.5640.001704
S982S982LtCatTa44B.1.617.20.000015
S982S982ATcaGca44B.1.6370.000292
S982S982ATcaGca44P.1.150.000929
S982S982ATcaGca33A0.001161
S982S982VTCaGTa33All0.000001
S982S982StcAtcG33AY.160.001139
S982S982StcAtcG33AY.30.00003
S982S982ATcaGca33AY.330.0002
S982S982LtCatTa33AY.330.0002
S982S982ATcaGca33AY.520.002443
S982S982ATcaGca33AY.750.000168
S982S982delTCA---33B.10.000027
S982S982LtCatTa33B.10.000027
S982S982ATcaGca33B.1.1.3180.000905
S982S982TTcaAca33B.1.1.70.000003
S982S982ATcaGca33B.1.1390.002199
S982S982ATcaGca33B.1.177.860.00055
S982S982ATcaGca33B.1.258.170.000312
S982S982ATcaGca33B.1.3110.000824
S982S982ATcaGca33B.1.3690.000856
S982S982ATcaGca33B.1.5250.000339
S982S982ATcaGca33B.1.5800.012195
S982S982ATcaGca33B.1.5990.010949
S982S982ATcaGca33B.1.6270.006061
S982S982StcAtcG33C.160.003181
S982S982ATcaGca33C.370.000348
S982S982StcAtcG22A.10.000564
S982S982del2TCAC--12All0
S982S982del1tcAtc-12All0
S982S982del2TCa--a12All0
S982S982del1Tca-ca12All0
S982S982LtCatTa22AY.1030.000012
S982S982LtCatTa22AY.260.000057
S982S982StcAtcG22AY.39.10.000079
S982S982ATcaGca22AY.4.2.10.000298
S982S982StcAtcG22AY.430.000009
S982S982LtCatTa22AY.440.000012
S982S982LtCatTa22AY.470.000062
S982S982delTCA---22AY.50.000041
S982S982ATcaGca22AY.530.000575
S982S982ATcaGca22AY.850.000854
S982S982XtCatAa22B.10.000018
S982S982LtCatTa22B.1.10.000036
S982S982StcAtcG12B.1.10.000018
S982S982StcAtcC12B.1.10.000018
S982S982LtCatTa22B.1.1.1570.001826
S982S982ATcaGca22B.1.1.3700.025316
S982S982ATcaGca22B.1.1.5230.003125
S982S982VTCaGTa22B.1.1.70.000002
S982S982StcAtcT22B.1.1600.000062
S982S982StcAtcT22B.1.160.160.001859
S982S982delTCA---22B.1.1770.000026
S982S982StcAtcT12B.1.1770.000013
S982S982StcAtcC12B.1.1770.000013
S982S982ATcaGca22B.1.177.120.000303
S982S982ATcaGca22B.1.2370.00995
S982S982ATcaGca22B.1.4270.000101
S982S982LtCatTa22B.1.5770.001375
S982S982ATcaGca22B.1.6090.000959
S982S982delTCA---22B.1.617.20.000008
S982S982ATcaGca22B.1.6210.000177
S982S982LtCatTa22B.1.6210.000177
S982S982ATcaGca22B.1.6330.083333
S982S982LtCatTa22C.370.000232
S982S982StcAtcT12P.10.000016
S982S982StcAtcG12P.10.000016
S982S982ATcaGca22P.1.130.001797
S982S982ATcaGca11A.2.50.000499
S982S982ATcaGca11A.270.001656
S982S982LtCatTa11AE.80.000489
S982S982GTCaGGa11All0
S982S982ETCaGAa11All0
S982S982ATcaGca11AY.1020.000027
S982S982LtCatTa11AY.1020.000027
S982S982PTcaCca11AY.1030.000006
S982S982StcAtcG11AY.1100.000113
S982S982delTCA---11AY.1200.000037
S982S982ATcaGca11AY.120.20.001285
S982S982LtCatTa11AY.120.2.10.000498
S982S982ATcaGca11AY.1210.000135
S982S982LtCatTa11AY.160.00038
S982S982ATcaGca11AY.16.10.00047
S982S982StcAtcG11AY.200.000039
S982S982StcAtcC11AY.230.00007
S982S982delTCA---11AY.250.000006
S982S982PTcaCca11AY.250.000006
S982S982LtCatTa11AY.250.000006
S982S982ATcaGca11AY.30.00001
S982S982PTcaCca11AY.30.00001
S982S982StcAtcG11AY.330.000067
S982S982ATcaGca11AY.360.000148
S982S982StcAtcT11AY.390.000025
S982S982delTCA---11AY.4.50.000107
S982S982delTCA---11AY.430.000004
S982S982del2TCAC--11AY.440.000006
S982S982TTcaAca11AY.440.000006
S982S982ATcaGca11AY.460.000104
S982S982ATcaGca11AY.46.20.000635
S982S982ATcaGca11AY.50.000021
S982S982StcAtcG11AY.50.000021
S982S982XtCatAa11AY.520.000814
S982S982ATcaGca11AY.540.000095
S982S982XtCatAa11AY.590.00053
S982S982ATcaGca11AY.610.000105
S982S982ATcaGca11AY.650.000533
S982S982delTCA---11AY.680.000274
S982S982ATcaGca11AY.700.000209
S982S982ATcaGca11AY.740.000116
S982S982delTCA---11AY.810.001992
S982S982ATcaGca11AY.9.10.000084
S982S982ATcaGca11AY.920.000287
S982S982ATcaGca11AY.950.000761
S982S982ATcaGca11AY.98.10.000048
S982S982StcAtcC11B.10.000009
S982S982TTcaAca11B.10.000009
S982S982PTcaCca11B.10.000009
S982S982ATcaGca11B.1.1.100.001115
S982S982StcAtcT11B.1.1.1530.001095
S982S982ATcaGca11B.1.1.1710.003676
S982S982ATcaGca11B.1.1.2160.00089
S982S982delTCA---11B.1.1.2360.006897
S982S982ATcaGca11B.1.1.2360.006897
S982S982ATcaGca11B.1.1.2770.000759
S982S982ATcaGca11B.1.1.280.000311
S982S982ATcaGca11B.1.1.2840.000107
S982S982LtCatTa11B.1.1.2940.001266
S982S982LtCatTa11B.1.1.3090.005848
S982S982delTCA---11B.1.1.3120.001912
S982S982delTCA---11B.1.1.3150.008475
S982S982ATcaGca11B.1.1.3170.000412
S982S982XtCatAa11B.1.1.3260.001761
S982S982ATcaGca11B.1.1.3430.020833
S982S982ATcaGca11B.1.1.3740.002375
S982S982ATcaGca11B.1.1.390.00051
S982S982ATcaGca11B.1.1.4170.002703
S982S982ATcaGca11B.1.1.5240.020833
S982S982ATcaGca11B.1.1.5260.003546
S982S982ETCaGAa11B.1.1.70.000001
S982S982PTcaCca11B.1.1.70.000001
S982S982del1Tca-ca11B.1.1.70.000001
S982S982GTCaGGa11B.1.1.70.000001
S982S982delTCA---11B.1.1.700.000341
S982S982ATcaGca11B.1.1.700.000341
S982S982LtCatTa11B.1.1.700.000341
S982S982delTCA---11B.1.1400.018868
S982S982ATcaGca11B.1.160.70.002079
S982S982ATcaGca11B.1.1700.00431
S982S982LtCatTa11B.1.1770.000013
S982S982ATcaGca11B.1.177.150.000631
S982S982delTCA---11B.1.177.170.000821
S982S982ATcaGca11B.1.177.190.001431
S982S982ATcaGca11B.1.177.210.000076
S982S982del2TCa--a11B.1.177.210.000076
S982S982delTCA---11B.1.177.40.000211
S982S982ATcaGca11B.1.177.40.000211
S982S982ATcaGca11B.1.177.540.000606
S982S982LtCatTa11B.1.177.570.000281
S982S982delTCA---11B.1.177.620.001192
S982S982delTCA---11B.1.177.630.002703
S982S982ATcaGca11B.1.177.650.000665
S982S982VTCaGTa11B.1.177.70.000165
S982S982StcAtcT11B.1.177.890.02439
S982S982delTCA---11B.1.20.000009
S982S982LtCatTa11B.1.20.000009
S982S982ATcaGca11B.1.2140.003663
S982S982LtCatTa11B.1.230.006061
S982S982ATcaGca11B.1.2340.000132
S982S982ATcaGca11B.1.2580.000067
S982S982ATcaGca11B.1.3010.005917
S982S982PTcaCca11B.1.3130.006579
S982S982ATcaGca11B.1.3490.000715
S982S982ATcaGca11B.1.3540.043478
S982S982ATcaGca11B.1.360.000146
S982S982delTCA---11B.1.36.170.000494
S982S982StcAtcG11B.1.3600.012658
S982S982StcAtcG11B.1.3750.00082
S982S982ATcaGca11B.1.3800.006623
S982S982ATcaGca11B.1.3960.000706
S982S982ATcaGca11B.1.3970.004854
S982S982ATcaGca11B.1.3990.001934
S982S982PTcaCca11B.1.4240.008065
S982S982ATcaGca11B.1.4320.011236
S982S982ATcaGca11B.1.4330.003195
S982S982LtCatTa11B.1.438.10.000107
S982S982ATcaGca11B.1.5240.001406
S982S982ATcaGca11B.1.5300.007143
S982S982ATcaGca11B.1.5330.009615
S982S982PTcaCca11B.1.5510.00129
S982S982ATcaGca11B.1.5610.000397
S982S982ATcaGca11B.1.5740.002151
S982S982ATcaGca11B.1.5750.000303
S982S982delTCA---11B.1.5760.000907
S982S982ATcaGca11B.1.5770.000687
S982S982ATcaGca11B.1.6060.006024
S982S982TTcaAca11B.1.617.20.000004
S982S982ATcaGca11B.1.617.30.002985
S982S982ATcaGca11B.1.6190.000871
S982S982ATcaGca11B.1.6200.000946
S982S982ATcaGca11B.1.6340.003425
S982S982ATcaGca11B.1.6360.006711
S982S982ATcaGca11B.1.9.50.005682
S982S982ATcaGca11B.1.940.027027
S982S982PTcaCca11B.60.00091
S982S982delTCA---11C.370.000116
S982S982PTcaCca11D.20.000075
S982S982LtCatTa11D.20.000075
S982S982delTCA---11P.10.000016
S982S982LtCatTa11P.1.10.000318
S982S982ATcaGca11P.1.10.10.00813
S982S982del1tcAtc-11P.1.140.000048
S982S982PTcaCca11P.1.140.000048
S982S982LtCatTa11P.20.000187
S982S982ATcaGca11R.10.00009