CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 98 & Codon = tTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S98S98FnonsyntCttTt42511425090.99995321854-21856

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S98S98FtCttTt4250942511All0.00813
S98S98FtCttTt2066320663B.1.1.70.018498
S98S98FtCttTt1369713698B.1.2210.972936
S98S98FtCttTt11951195B.1.221.30.995833
S98S98FtCttTt497497AY.40.000774
S98S98FtCttTt354354B.10.003242
S98S98FtCttTt348348B.1.617.20.00131
S98S98FtCttTt344344B.1.221.11
S98S98FtCttTt324324B.1.20.002853
S98S98FtCttTt268268B.1.1770.003529
S98S98FtCttTt245245B.1.221.20.983936
S98S98FtCttTt239239B.1.221.40.995833
S98S98FtCttTt225225AY.1030.001397
S98S98FtCttTt214214B.1.3510.006361
S98S98FtCttTt170170AY.430.000753
S98S98FtCttTt139139AY.250.000836
S98S98FtCttTt135135B.1.1600.00421
S98S98FtCttTt122122B.1.10.002213
S98S98FtCttTt120120B.1.177.730.06795
S98S98FtCttTt119119AY.4.20.002581
S98S98FtCttTt116116AY.980.009163
S98S98FtCttTt111111B.1.5510.143226
S98S98FtCttTt105105B.1.5250.011882
S98S98FtCttTt9999B.1.6370.007234
S98S98FtCttTt9595AY.440.000578
S98S98FtCttTt8989AY.50.001838
S98S98FtCttTt7979B.1.177.440.040996
S98S98FtCttTt7777Q.10.009727
S98S98FtCttTt6767B.1.1.5190.002661
S98S98FtCttTt6565P.10.001024
S98S98FtCttTt6262AY.30.000617
S98S98FtCttTt6262B.1.4270.003131
S98S98FtCttTt5959B.1.5260.001387
S98S98FtCttTt5656AY.420.002253
S98S98FtCttTt5555B.1.2580.00366
S98S98FtCttTt5454AY.570.035433
S98S98FtCttTt5050AY.290.000789
S98S98FtCttTt4343B.1.2430.002992
S98S98FtCttTt4343B.1.4290.001012
S98S98FtCttTt4343Q.80.007091
S98S98FtCttTt4141B.1.1.3740.097387
S98S98FtCttTt4141B.1.6210.003629
S98S98FtCttTt4040B.1.177.770.029049
S98S98FtCttTt4040C.310.714286
S98S98FtCttTt3838AY.390.000939
S98S98FtCttTt3434AY.470.001058
S98S98FtCttTt3434B.1.360.004961
S98S98FtCttTt3333B.1.3960.023289
S98S98FtCttTt3232AY.260.000906
S98S98FtCttTt2828AY.750.001569
S98S98FtCttTt2727C.370.003134
S98S98FtCttTt2525AY.1020.000663
S98S98FtCttTt2323B.1.5950.006002
S98S98FtCttTt2222A.2.50.010978
S98S98FtCttTt2222C.160.02333
S98S98FtCttTt1919AY.46.60.001372
S98S98FtCttTt1818AY.230.001255
S98S98FtCttTt1818B.1.177.530.043062
S98S98FtCttTt1818B.1.1790.067669
S98S98FtCttTt1717B.1.177.150.010726
S98S98FtCttTt1717B.1.760.193182
S98S98FtCttTt1616AY.140.001408
S98S98FtCttTt1616AY.98.10.000775
S98S98FtCttTt1616B.1.2410.012987
S98S98FtCttTt1616B.1.5960.001394
S98S98FtCttTt1515AY.200.000583
S98S98FtCttTt1515AY.90.001014
S98S98FtCttTt1414A.2.5.10.067308
S98S98FtCttTt1414B.1.1.3060.006138
S98S98FtCttTt1414B.1.177.600.003058
S98S98FtCttTt1414B.1.5090.012121
S98S98FtCttTt1313AY.1190.000459
S98S98FtCttTt1313B.1.2100.027719
S98S98FtCttTt1212AY.1000.000552
S98S98FtCttTt1212B.1.438.10.001287
S98S98FtCttTt1212B.1.617.10.001548
S98S98FtCttTt1111B0.001406
S98S98FtCttTt1111B.1.177.210.000841
S98S98FtCttTt1111B.1.258.170.001144
S98S98FtCttTt1111B.1.5820.005397
S98S98FtCttTt1010AY.1170.000845
S98S98FtCttTt1010AY.60.000411
S98S98FtCttTt1010AY.640.005952
S98S98FtCttTt1010AY.9.20.000367
S98S98FtCttTt1010B.1.1.5250.054645
S98S98FtCttTt1010B.1.1.5280.048077
S98S98FtCttTt99AY.1180.000564
S98S98FtCttTt99AY.5.40.00249
S98S98FtCttTt99AY.700.001877
S98S98FtCttTt99B.1.1.10.00294
S98S98FtCttTt99B.1.1.2740.045455
S98S98FtCttTt99R.10.00081
S98S98FtCttTt88AY.360.001186
S98S98FtCttTt88AY.4.2.10.001192
S98S98FtCttTt78AY.930.001912
S98S98FtCttTt88AY.99.20.000737
S98S98FtCttTt88B.1.1.1760.003515
S98S98FtCttTt88B.1.1.250.004548
S98S98FtCttTt88B.1.1.4160.00724
S98S98FtCttTt88B.1.160.320.034335
S98S98FtCttTt88B.1.2340.001056
S98S98FtCttTt88B.1.36.10.009122
S98S98FtCttTt88B.1.4700.011236
S98S98FtCttTt88Q.40.003638
S98S98FtCttTt77AY.340.000679
S98S98FtCttTt77AY.610.000733
S98S98FtCttTt77AY.740.00081
S98S98FtCttTt77B.1.1.2140.000388
S98S98FtCttTt77B.1.1.2160.006233
S98S98FtCttTt77B.1.1.3110.002507
S98S98FtCttTt77B.1.1.3160.006475
S98S98FtCttTt77B.1.1.3180.002112
S98S98FtCttTt77B.1.1390.005132
S98S98FtCttTt77B.1.177.430.01034
S98S98FtCttTt77B.1.3110.001922
S98S98FtCttTt77B.1.466.20.002739
S98S98FtCttTt77B.1.6310.023569
S98S98FtCttTt77P.1.140.000335
S98S98FtCttTt66AY.1200.000223
S98S98FtCttTt66AY.1210.000812
S98S98FtCttTt66AY.460.000624
S98S98FtCttTt66B.1.1.2220.001224
S98S98FtCttTt66B.1.1.280.001867
S98S98FtCttTt66B.1.1.330.002525
S98S98FtCttTt66B.1.1.500.004073
S98S98FtCttTt66B.1.160.290.025316
S98S98FtCttTt66B.1.177.90.007989
S98S98FtCttTt66B.1.258.210.046512
S98S98FtCttTt66B.1.5750.00182
S98S98FtCttTt66B.1.6380.315789
S98S98FtCttTt55A0.001935
S98S98FtCttTt55A.210.01385
S98S98FtCttTt55AY.20.001781
S98S98FtCttTt55AY.5.30.001687
S98S98FtCttTt55AY.660.005348
S98S98FtCttTt55AY.9.10.000419
S98S98FtCttTt55B.1.1.2910.003712
S98S98FtCttTt55B.1.177.160.003322
S98S98FtCttTt55B.1.4330.015974
S98S98FtCttTt55B.1.4970.001574
S98S98FtCttTt55B.1.575.10.012195
S98S98FtCttTt44AD.20.000876
S98S98FtCttTt44AY.39.10.000158
S98S98FtCttTt44AY.46.20.002541
S98S98FtCttTt44AY.850.001709
S98S98FtCttTt44B.1.1.1740.013514
S98S98FtCttTt44B.1.1.2770.003035
S98S98FtCttTt44B.1.1.630.001543
S98S98FtCttTt44B.1.160.160.003717
S98S98FtCttTt44B.1.177.310.045977
S98S98FtCttTt44B.1.177.420.003578
S98S98FtCttTt44B.1.177.810.000757
S98S98FtCttTt44B.1.2060.003263
S98S98FtCttTt44B.1.2130.059701
S98S98FtCttTt44B.1.36.170.001976
S98S98FtCttTt44B.1.4000.001716
S98S98FtCttTt44B.1.6090.001918
S98S98FtCttTt44D.20.0003
S98S98FtCttTt44P.1.10.001271
S98S98FtCttTt44P.1.120.001936
S98S98FtCttTt44P.1.170.000647
S98S98FtCttTt44Q.30.00058
S98S98FtCttTt33A.2.5.30.030928
S98S98FtCttTt33AY.1060.001005
S98S98FtCttTt33AY.1140.000693
S98S98FtCttTt33AY.120.10.000963
S98S98FtCttTt33AY.150.006667
S98S98FtCttTt33AY.240.001293
S98S98FtCttTt33AY.450.000365
S98S98FtCttTt33AY.46.50.000595
S98S98FtCttTt33AY.540.000286
S98S98FtCttTt33AY.670.001393
S98S98FtCttTt33AY.920.000862
S98S98FtCttTt33B.1.1.1570.00274
S98S98FtCttTt33B.1.1.1620.088235
S98S98FtCttTt33B.1.1.1890.004539
S98S98FtCttTt33B.1.1.370.000579
S98S98FtCttTt33B.1.1.4480.006098
S98S98FtCttTt33B.1.177.180.00348
S98S98FtCttTt33B.1.177.350.002073
S98S98FtCttTt33B.1.177.410.0075
S98S98FtCttTt33B.1.177.80.002257
S98S98FtCttTt33B.1.1890.012876
S98S98FtCttTt33B.1.3490.002144
S98S98FtCttTt33B.1.36.180.001261
S98S98FtCttTt33B.1.4040.003906
S98S98FtCttTt33B.1.5610.001191
S98S98FtCttTt33B.1.780.025641
S98S98FtCttTt33L.30.010638
S98S98FtCttTt22AY.100.00106
S98S98FtCttTt22AY.1110.000366
S98S98FtCttTt22AY.1130.000285
S98S98FtCttTt22AY.116.10.000623
S98S98FtCttTt22AY.130.000322
S98S98FtCttTt22AY.29.10.000441
S98S98FtCttTt22AY.3.10.000171
S98S98FtCttTt22AY.300.000791
S98S98FtCttTt22AY.370.000632
S98S98FtCttTt22AY.550.001835
S98S98FtCttTt22AY.590.001059
S98S98FtCttTt22AY.680.000547
S98S98FtCttTt22AY.840.000875
S98S98FtCttTt22AZ.20.001642
S98S98FtCttTt22AZ.60.016807
S98S98FtCttTt22B.1.1.2310.006192
S98S98FtCttTt22B.1.1.2440.030769
S98S98FtCttTt22B.1.1.2630.003115
S98S98FtCttTt22B.1.1.2800.006173
S98S98FtCttTt22B.1.1.3260.003521
S98S98FtCttTt22B.1.1.340.026316
S98S98FtCttTt22B.1.1.390.001019
S98S98FtCttTt22B.1.1110.00235
S98S98FtCttTt22B.1.1420.005797
S98S98FtCttTt22B.1.177.100.001756
S98S98FtCttTt22B.1.177.230.006472
S98S98FtCttTt22B.1.177.580.002663
S98S98FtCttTt22B.1.177.750.002081
S98S98FtCttTt22B.1.177.830.002963
S98S98FtCttTt22B.1.2320.001075
S98S98FtCttTt22B.1.36.390.004435
S98S98FtCttTt22B.1.3780.013699
S98S98FtCttTt22B.1.4510.016393
S98S98FtCttTt22B.1.4730.038462
S98S98FtCttTt22B.1.4800.004975
S98S98FtCttTt22B.1.5200.043478
S98S98FtCttTt22B.1.5380.016129
S98S98FtCttTt22B.1.5490.014388
S98S98FtCttTt22B.1.5760.001813
S98S98FtCttTt22B.1.5800.00813
S98S98FtCttTt22B.1.621.10.001012
S98S98FtCttTt22B.390.004662
S98S98FtCttTt22C.350.001548
S98S98FtCttTt22C.360.001821
S98S98FtCttTt22C.36.30.001134
S98S98FtCttTt22K.30.012346
S98S98FtCttTt22P.1.60.003891
S98S98FtCttTt110.055556
S98S98FtCttTt11A.230.010526
S98S98FtCttTt11A.270.001656
S98S98FtCttTt11A.290.005319
S98S98FtCttTt11A.30.002096
S98S98FtCttTt11AY.1050.000643
S98S98FtCttTt11AY.1070.000466
S98S98FtCttTt11AY.1160.000287
S98S98FtCttTt11AY.120.000316
S98S98FtCttTt11AY.16.10.00047
S98S98FtCttTt11AY.270.000065
S98S98FtCttTt11AY.280.00189
S98S98FtCttTt11AY.330.000067
S98S98FtCttTt11AY.350.000233
S98S98FtCttTt11AY.380.000499
S98S98FtCttTt11AY.4.50.000107
S98S98FtCttTt11AY.5.20.002463
S98S98FtCttTt11AY.530.000288
S98S98FtCttTt11AY.580.000907
S98S98FtCttTt11AY.620.000436
S98S98FtCttTt11AY.690.000187
S98S98FtCttTt11AY.70.000196
S98S98FtCttTt11AY.710.000475
S98S98FtCttTt11B.1.1.100.001115
S98S98FtCttTt11B.1.1.1010.01
S98S98FtCttTt11B.1.1.1290.009174
S98S98FtCttTt11B.1.1.1380.006061
S98S98FtCttTt11B.1.1.1920.002309
S98S98FtCttTt11B.1.1.1940.00495
S98S98FtCttTt11B.1.1.1960.005714
S98S98FtCttTt11B.1.1.2050.003717
S98S98FtCttTt11B.1.1.2430.004082
S98S98FtCttTt11B.1.1.2840.000107
S98S98FtCttTt11B.1.1.3120.001912
S98S98FtCttTt11B.1.1.3330.001076
S98S98FtCttTt11B.1.1.3470.018182
S98S98FtCttTt11B.1.1.3510.002793
S98S98FtCttTt11B.1.1.3620.005618
S98S98FtCttTt11B.1.1.3750.011905
S98S98FtCttTt11B.1.1.3850.004464
S98S98FtCttTt11B.1.1.3980.003226
S98S98FtCttTt11B.1.1.4090.002833
S98S98FtCttTt11B.1.1.4190.007407
S98S98FtCttTt11B.1.1.470.005348
S98S98FtCttTt11B.1.1.5230.001563
S98S98FtCttTt11B.1.1.700.000341
S98S98FtCttTt11B.1.1.830.00271
S98S98FtCttTt11B.1.110.30.000718
S98S98FtCttTt11B.1.160.140.002119
S98S98FtCttTt11B.1.160.170.001701
S98S98FtCttTt11B.1.160.260.002421
S98S98FtCttTt11B.1.160.300.002976
S98S98FtCttTt11B.1.160.80.001289
S98S98FtCttTt11B.1.1620.005025
S98S98FtCttTt11B.1.1640.014925
S98S98FtCttTt11B.1.177.120.000152
S98S98FtCttTt11B.1.177.240.001295
S98S98FtCttTt11B.1.177.320.00135
S98S98FtCttTt11B.1.177.340.052632
S98S98FtCttTt11B.1.177.40.000211
S98S98FtCttTt11B.1.177.400.005155
S98S98FtCttTt11B.1.177.50.001242
S98S98FtCttTt11B.1.177.540.000606
S98S98FtCttTt11B.1.177.560.000668
S98S98FtCttTt11B.1.177.570.000281
S98S98FtCttTt11B.1.177.60.000977
S98S98FtCttTt11B.1.177.670.007634
S98S98FtCttTt11B.1.177.690.001484
S98S98FtCttTt11B.1.177.70.000165
S98S98FtCttTt11B.1.177.740.015152
S98S98FtCttTt11B.1.177.840.006667
S98S98FtCttTt11B.1.177.870.000728
S98S98FtCttTt11B.1.1820.007246
S98S98FtCttTt11B.1.2140.003663
S98S98FtCttTt11B.1.2360.002053
S98S98FtCttTt11B.1.2400.000216
S98S98FtCttTt11B.1.243.10.022222
S98S98FtCttTt11B.1.258.110.000396
S98S98FtCttTt11B.1.2600.003344
S98S98FtCttTt11B.1.2840.013158
S98S98FtCttTt11B.1.2910.019231
S98S98FtCttTt11B.1.351.20.000303
S98S98FtCttTt11B.1.351.30.000876
S98S98FtCttTt11B.1.351.50.0006
S98S98FtCttTt11B.1.36.290.000517
S98S98FtCttTt11B.1.36.350.002604
S98S98FtCttTt11B.1.3670.000792
S98S98FtCttTt11B.1.3710.001122
S98S98FtCttTt11B.1.3750.00082
S98S98FtCttTt11B.1.3820.008929
S98S98FtCttTt11B.1.3890.001002
S98S98FtCttTt11B.1.4030.003268
S98S98FtCttTt11B.1.4160.001269
S98S98FtCttTt11B.1.416.10.001563
S98S98FtCttTt11B.1.4220.000812
S98S98FtCttTt11B.1.5010.007353
S98S98FtCttTt11B.1.5100.026316
S98S98FtCttTt11B.1.5330.009615
S98S98FtCttTt11B.1.5410.004425
S98S98FtCttTt11B.1.5440.006024
S98S98FtCttTt11B.1.5540.004405
S98S98FtCttTt11B.1.5650.00081
S98S98FtCttTt11B.1.5740.002151
S98S98FtCttTt11B.1.5770.000687
S98S98FtCttTt11B.1.5870.001898
S98S98FtCttTt11B.1.5880.00091
S98S98FtCttTt11B.1.6040.017241
S98S98FtCttTt11B.1.6260.005714
S98S98FtCttTt11B.1.6280.000352
S98S98FtCttTt11B.1.6320.006711
S98S98FtCttTt11B.290.003509
S98S98FtCttTt11B.400.000364
S98S98FtCttTt11B.60.00091
S98S98FtCttTt11B.6.60.000889
S98S98FtCttTt11C.10.002392
S98S98FtCttTt11C.1.20.004255
S98S98FtCttTt11C.390.018868
S98S98FtCttTt11N.50.001767
S98S98FtCttTt11P.1.150.000232
S98S98FtCttTt11P.1.160.000374
S98S98FtCttTt11P.1.17.10.000875
S98S98FtCttTt11P.1.20.001156
S98S98FtCttTt11P.1.70.000319
S98S98FtCttTt11P.20.000187
S98S98FtCttTt11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.