CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 979

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S979D979DsyngaTgaC39343934124497-24499
S979D979EnonsyngaTgaA271827110.99742524497-24499
S979D979EnonsyngaTgaG271870.0025754224497-24499
S979D979YnonsynGatTat228228124497-24499
S979D979deldelGAT---4949124497-24499
S979D979HnonsynGatCat4343124497-24499
S979D979VnonsyngAtgTt3333124497-24499
S979D979NnonsynGatAat88124497-24499
S979D979GnonsyngAtgGt44124497-24499
S979D979del1delGat-at430.7524497-24499
S979D979del1delGAT-NN410.2524497-24499
S979D979del2delgATg--320.66666724497-24499
S979D979del2delGAt--t310.33333324497-24499

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S979D979DgaTgaC39343934All0.000752
S979D979EgaTgaA27112718All0.000519
S979D979EgaTgaG72718All0.000001
S979D979EgaTgaA26932693AY.680.737202
S979D979DgaTgaC13981398B.1.1.70.001252
S979D979DgaTgaC864864B.1.20.007608
S979D979DgaTgaC353353B.1.258.170.036702
S979D979YGatTat228228All0.000044
S979D979DgaTgaC159159B.1.617.20.000599
S979D979DgaTgaC139139B.10.001273
S979D979DgaTgaC7979AY.1000.003635
S979D979YGatTat7979D.20.005928
S979D979DgaTgaC7878B.1.1770.001027
S979D979DgaTgaC6666AY.40.000103
S979D979DgaTgaC6565B.1.1.2220.01326
S979D979delGAT---4949All0.000009
S979D979DgaTgaC4747AY.1030.000292
S979D979HGatCat4343All0.000008
S979D979DgaTgaC4242B.1.10.000762
S979D979DgaTgaC4141P.10.000646
S979D979DgaTgaC4040B.1.5960.003486
S979D979VgAtgTt3333All0.000006
S979D979DgaTgaC3333AY.4.20.000716
S979D979DgaTgaC3232B.1.177.210.002447
S979D979DgaTgaC3030B.1.1.3010.035377
S979D979DgaTgaC2323AY.980.001817
S979D979DgaTgaC2323B.1.2340.003035
S979D979YGatTat2222AY.1030.000137
S979D979DgaTgaC2222AY.90.001487
S979D979YGatTat2121B.1.1.70.000019
S979D979DgaTgaC2020AY.250.00012
S979D979DgaTgaC1919AY.440.000116
S979D979DgaTgaC1919B.1.2580.001264
S979D979YGatTat1717AY.40.000026
S979D979DgaTgaC1616AY.1200.000595
S979D979delGAT---1616B.1.1.70.000014
S979D979DgaTgaC1414B.1.1.2690.018945
S979D979DgaTgaC1313AY.1020.000345
S979D979DgaTgaC1313AY.430.000058
S979D979DgaTgaC1313B.1.1.2140.000721
S979D979DgaTgaC1212AY.30.000119
S979D979VgAtgTt1212AY.30.000119
S979D979HGatCat1212AY.40.000019
S979D979DgaTgaC1212P.1.140.000574
S979D979DgaTgaC1010AY.1190.000353
S979D979DgaTgaC99AY.200.00035
S979D979VgAtgTt99B.1.1.70.000008
S979D979NGatAat88All0.000002
S979D979DgaTgaC88AY.390.000198
S979D979DgaTgaC77AY.230.000488
S979D979YGatTat77AY.430.000031
S979D979YGatTat77B.10.000064
S979D979DgaTgaC77B.1.1600.000218
S979D979DgaTgaC77B.1.2210.000497
S979D979DgaTgaC77B.1.4000.003003
S979D979DgaTgaC77B.1.621.10.003541
S979D979DgaTgaC66AY.360.000889
S979D979DgaTgaC66AY.4.50.000645
S979D979DgaTgaC66B.1.3510.000178
S979D979DgaTgaC66B.1.5260.000141
S979D979EgaTgaA66B.1.617.20.000023
S979D979YGatTat66B.1.617.20.000023
S979D979YGatTat55B.1.20.000044
S979D979DgaTgaC55B.1.4290.000118
S979D979DgaTgaC55B.1.4970.001574
S979D979DgaTgaC55B.1.5610.001985
S979D979GgAtgGt44All0.000001
S979D979del1Gat-at34All0.000001
S979D979del1GAT-NN14All0
S979D979YGatTat44AY.390.000099
S979D979DgaTgaC44AY.420.000161
S979D979DgaTgaC44AY.9.10.000335
S979D979DgaTgaC44AY.99.20.000369
S979D979DgaTgaC44B.1.2400.000862
S979D979DgaTgaC44B.1.4220.003249
S979D979HGatCat44B.1.617.20.000015
S979D979del2gATg--23All0
S979D979del2GAt--t13All0
S979D979YGatTat33AY.1000.000138
S979D979DgaTgaC33AY.260.000085
S979D979DgaTgaC33AY.410.000882
S979D979DgaTgaC33AY.50.000062
S979D979DgaTgaC33AY.540.000286
S979D979EgaTgaG33AY.90.000203
S979D979EgaTgaA33AY.9.20.00011
S979D979delGAT---33B.10.000027
S979D979HGatCat33B.1.1.70.000003
S979D979DgaTgaC33B.1.1.700.001023
S979D979DgaTgaC33B.1.1.830.00813
S979D979YGatTat33B.1.1770.00004
S979D979DgaTgaC33B.1.2430.000209
S979D979DgaTgaC33B.1.3060.017143
S979D979DgaTgaC33B.1.4410.028846
S979D979delGAT---33B.1.617.20.000011
S979D979DgaTgaC33C.370.000348
S979D979YGatTat33P.10.000047
S979D979DgaTgaC33P.1.150.000697
S979D979DgaTgaC22A0.000774
S979D979DgaTgaC22AY.100.00106
S979D979HGatCat22AY.1030.000012
S979D979DgaTgaC22AY.1180.000125
S979D979HGatCat22AY.1190.000071
S979D979DgaTgaC22AY.290.000032
S979D979VgAtgTt22AY.40.000003
S979D979EgaTgaG12AY.40.000002
S979D979EgaTgaA12AY.40.000002
S979D979DgaTgaC22AY.460.000208
S979D979DgaTgaC22AY.46.40.000329
S979D979DgaTgaC22AY.470.000062
S979D979delGAT---22AY.50.000041
S979D979DgaTgaC22AY.610.00021
S979D979DgaTgaC22AY.650.001066
S979D979EgaTgaA22AY.750.000112
S979D979YGatTat22AY.9.20.000073
S979D979VgAtgTt22B.10.000018
S979D979HGatCat22B.1.10.000036
S979D979YGatTat22B.1.10.000036
S979D979DgaTgaC22B.1.1.4190.014815
S979D979del1Gat-at12B.1.1.70.000001
S979D979del1GAT-NN12B.1.1.70.000001
S979D979delGAT---22B.1.1770.000026
S979D979YGatTat22B.1.177.240.002591
S979D979VgAtgTt22B.1.177.350.001382
S979D979delGAT---22B.1.177.40.000422
S979D979VgAtgTt22B.1.177.420.001789
S979D979DgaTgaC22B.1.2700.011236
S979D979DgaTgaC22B.1.3260.015152
S979D979DgaTgaC22B.1.3980.005952
S979D979YGatTat22B.1.4270.000101
S979D979DgaTgaC22B.1.5800.00813
S979D979DgaTgaC22B.1.617.10.000258
S979D979DgaTgaC22B.1.6280.000705
S979D979DgaTgaC22B.120.012821
S979D979DgaTgaC22C.37.10.005236
S979D979DgaTgaC22P.20.000373
S979D979DgaTgaC22P.30.00319
S979D979DgaTgaC22R.10.00018
S979D979del1Gat-at11A0.000387
S979D979HGatCat11A0.000387
S979D979YGatTat11A0.000387
S979D979YGatTat11A.2.20.001689
S979D979DgaTgaC11A.2.5.10.004808
S979D979DgaTgaC11AE.80.000489
S979D979DgaTgaC11AY.10.000396
S979D979DgaTgaC11AY.1010.00049
S979D979HGatCat11AY.1020.000027
S979D979YGatTat11AY.1020.000027
S979D979GgAtgGt11AY.1030.000006
S979D979DgaTgaC11AY.1160.000287
S979D979EgaTgaA11AY.1170.000085
S979D979delGAT---11AY.1200.000037
S979D979EgaTgaA11AY.120.20.001285
S979D979DgaTgaC11AY.120.20.001285
S979D979DgaTgaC11AY.160.00038
S979D979YGatTat11AY.160.00038
S979D979DgaTgaC11AY.16.10.00047
S979D979DgaTgaC11AY.190.00114
S979D979HGatCat11AY.200.000039
S979D979YGatTat11AY.200.000039
S979D979DgaTgaC11AY.240.000431
S979D979delGAT---11AY.250.000006
S979D979YGatTat11AY.250.000006
S979D979HGatCat11AY.250.000006
S979D979YGatTat11AY.260.000028
S979D979HGatCat11AY.290.000016
S979D979YGatTat11AY.290.000016
S979D979del2gATg--11AY.30.00001
S979D979YGatTat11AY.30.00001
S979D979DgaTgaC11AY.320.000532
S979D979YGatTat11AY.330.000067
S979D979DgaTgaC11AY.380.000499
S979D979delGAT---11AY.40.000002
S979D979NGatAat11AY.40.000002
S979D979HGatCat11AY.4.50.000107
S979D979HGatCat11AY.430.000004
S979D979GgAtgGt11AY.430.000004
S979D979delGAT---11AY.430.000004
S979D979GgAtgGt11AY.440.000006
S979D979VgAtgTt11AY.440.000006
S979D979DgaTgaC11AY.450.000122
S979D979YGatTat11AY.450.000122
S979D979NGatAat11AY.460.000104
S979D979HGatCat11AY.46.40.000165
S979D979YGatTat11AY.46.60.000072
S979D979DgaTgaC11AY.46.60.000072
S979D979HGatCat11AY.50.000021
S979D979HGatCat11AY.5.30.000337
S979D979DgaTgaC11AY.5.30.000337
S979D979YGatTat11AY.520.000814
S979D979EgaTgaA11AY.530.000288
S979D979EgaTgaA11AY.580.000907
S979D979EgaTgaA11AY.590.00053
S979D979DgaTgaC11AY.60.000041
S979D979HGatCat11AY.610.000105
S979D979YGatTat11AY.610.000105
S979D979EgaTgaG11AY.610.000105
S979D979DgaTgaC11AY.640.000595
S979D979YGatTat11AY.670.000464
S979D979delGAT---11AY.680.000274
S979D979DgaTgaC11AY.680.000274
S979D979DgaTgaC11AY.70.000196
S979D979YGatTat11AY.70.000196
S979D979delGAT---11AY.720.001361
S979D979DgaTgaC11AY.740.000116
S979D979HGatCat11AY.740.000116
S979D979YGatTat11AY.750.000056
S979D979delGAT---11AY.75.10.00018
S979D979delGAT---11AY.810.001992
S979D979DgaTgaC11AY.880.000884
S979D979DgaTgaC11AY.9.20.000037
S979D979YGatTat11AY.98.10.000048
S979D979HGatCat11B.10.000009
S979D979del2gATg--11B.10.000009
S979D979NGatAat11B.1.10.000018
S979D979YGatTat11B.1.1.1760.000439
S979D979YGatTat11B.1.1.1980.001468
S979D979YGatTat11B.1.1.2160.00089
S979D979delGAT---11B.1.1.2360.006897
S979D979DgaTgaC11B.1.1.250.000569
S979D979DgaTgaC11B.1.1.2840.000107
S979D979DgaTgaC11B.1.1.3040.002809
S979D979DgaTgaC11B.1.1.3060.000438
S979D979delGAT---11B.1.1.3120.001912
S979D979delGAT---11B.1.1.3150.008475
S979D979YGatTat11B.1.1.5190.00004
S979D979DgaTgaC11B.1.1.5280.004808
S979D979del2GAt--t11B.1.1.70.000001
S979D979delGAT---11B.1.1.700.000341
S979D979DgaTgaC11B.1.1.80.003584
S979D979DgaTgaC11B.1.130.002375
S979D979delGAT---11B.1.1400.018868
S979D979NGatAat11B.1.160.160.000929
S979D979DgaTgaC11B.1.160.280.002924
S979D979EgaTgaA11B.1.1770.000013
S979D979NGatAat11B.1.177.150.000631
S979D979delGAT---11B.1.177.170.000821
S979D979delGAT---11B.1.177.210.000076
S979D979DgaTgaC11B.1.177.320.00135
S979D979delGAT---11B.1.177.620.001192
S979D979delGAT---11B.1.177.630.002703
S979D979NGatAat11B.1.177.730.000566
S979D979DgaTgaC11B.1.177.730.000566
S979D979HGatCat11B.1.177.790.002342
S979D979delGAT---11B.1.20.000009
S979D979NGatAat11B.1.20.000009
S979D979HGatCat11B.1.2350.002519
S979D979GgAtgGt11B.1.2430.00007
S979D979YGatTat11B.1.2580.000067
S979D979VgAtgTt11B.1.258.110.000396
S979D979YGatTat11B.1.3010.005917
S979D979YGatTat11B.1.3290.000608
S979D979YGatTat11B.1.3510.00003
S979D979NGatAat11B.1.360.000146
S979D979DgaTgaC11B.1.360.000146
S979D979delGAT---11B.1.36.170.000494
S979D979DgaTgaC11B.1.36.290.000517
S979D979DgaTgaC11B.1.36.80.001
S979D979DgaTgaC11B.1.3610.001289
S979D979DgaTgaC11B.1.3690.000285
S979D979DgaTgaC11B.1.3830.009009
S979D979DgaTgaC11B.1.3960.000706
S979D979DgaTgaC11B.1.4270.00005
S979D979EgaTgaG11B.1.4290.000024
S979D979YGatTat11B.1.4290.000024
S979D979YGatTat11B.1.4340.052632
S979D979YGatTat11B.1.4530.003236
S979D979DgaTgaC11B.1.4990.00105
S979D979DgaTgaC11B.1.5030.002488
S979D979DgaTgaC11B.1.5050.004386
S979D979YGatTat11B.1.5250.000113
S979D979DgaTgaC11B.1.5250.000113
S979D979YGatTat11B.1.5260.000024
S979D979DgaTgaC11B.1.5650.00081
S979D979YGatTat11B.1.5770.000687
S979D979VgAtgTt11B.1.5820.000491
S979D979YGatTat11B.1.5820.000491
S979D979DgaTgaC11B.1.5880.00091
S979D979HGatCat11B.1.5950.000261
S979D979EgaTgaG11B.1.5950.000261
S979D979YGatTat11B.1.595.40.007299
S979D979HGatCat11B.1.5960.000087
S979D979HGatCat11B.1.6120.002653
S979D979YGatTat11B.1.6210.000089
S979D979DgaTgaC11B.1.6210.000089
S979D979YGatTat11B.1.6230.000536
S979D979YGatTat11B.1.6370.000073
S979D979DgaTgaC11B.1.6370.000073
S979D979YGatTat11B.1.9.40.006135
S979D979DgaTgaC11B.30.000831
S979D979DgaTgaC11B.40.002208
S979D979DgaTgaC11B.60.00091
S979D979YGatTat11B.60.00091
S979D979YGatTat11B.6.60.000889
S979D979delGAT---11C.370.000116
S979D979del1Gat-at11D.20.000075
S979D979YGatTat11D.30.005917
S979D979delGAT---11P.10.000016
S979D979VgAtgTt11P.10.000016
S979D979DgaTgaC11P.1.10.000318
S979D979DgaTgaC11P.1.120.000484
S979D979YGatTat11P.1.150.000232
S979D979YGatTat11Q.30.000145