CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 960

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S960N960NsynaaCaaT96259625124440-24442
S960N960deldelAAC---6464124440-24442
S960N960KnonsynaaCaaA21150.71428624440-24442
S960N960KnonsynaaCaaG2160.28571424440-24442
S960N960SnonsynaAcaGc18160.88888924440-24442
S960N960SnonsynAAcTCc1810.055555624440-24442
S960N960SnonsynAACTCT1810.055555624440-24442
S960N960DnonsynAacGac1414124440-24442
S960N960TnonsynaAcaCc640.66666724440-24442
S960N960TnonsynaACaCG610.16666724440-24442
S960N960TnonsynaACaCA610.16666724440-24442
S960N960del2delaACa--530.624440-24442
S960N960del2delAAc--c520.424440-24442
S960N960HnonsynAacCac33124440-24442
S960N960YnonsynAacTac33124440-24442
S960N960del1delaaCaa-11124440-24442
S960N960PnonsynAAcCCc11124440-24442
S960N960InonsynaAcaTc11124440-24442

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S960N960NaaCaaT96259625All0.001841
S960N960NaaCaaT28032803B.1.6280.987667
S960N960NaaCaaT20562056B.1.1.70.001841
S960N960NaaCaaT836836P.10.01317
S960N960NaaCaaT481481B.1.6270.971717
S960N960NaaCaaT386386AY.690.072055
S960N960NaaCaaT295295B.1.6310.993266
S960N960NaaCaaT259259AY.40.000403
S960N960NaaCaaT182182B.1.20.001603
S960N960NaaCaaT155155AY.430.000687
S960N960NaaCaaT143143AY.1030.000888
S960N960NaaCaaT133133B.1.617.20.000501
S960N960NaaCaaT129129B.10.001182
S960N960NaaCaaT107107AY.440.000651
S960N960NaaCaaT104104P.1.120.050339
S960N960NaaCaaT7979AY.30.000786
S960N960NaaCaaT7676AY.250.000457
S960N960NaaCaaT6969B.1.4290.001623
S960N960delAAC---6464All0.000012
S960N960NaaCaaT5555B.1.10.000998
S960N960NaaCaaT4545B.1.1600.001403
S960N960NaaCaaT4343AY.1020.00114
S960N960NaaCaaT4141B.1.5260.000964
S960N960NaaCaaT3838B.1.1770.0005
S960N960NaaCaaT3838B.1.2210.002699
S960N960NaaCaaT3535AY.200.00136
S960N960NaaCaaT3434AY.450.004137
S960N960NaaCaaT3232AY.50.000661
S960N960NaaCaaT3131B.1.177.90.041278
S960N960delAAC---2828B.1.1.70.000025
S960N960NaaCaaT2323B.1.2430.0016
S960N960NaaCaaT2323B.1.5750.006978
S960N960NaaCaaT2222B.1.5250.00249
S960N960KaaCaaA1521All0.000003
S960N960KaaCaaG621All0.000001
S960N960NaaCaaT2020B.1.360.002918
S960N960NaaCaaT2020C.140.08658
S960N960NaaCaaT1919AY.90.001284
S960N960SaAcaGc1618All0.000003
S960N960SAACTCT118All0
S960N960SAAcTCc118All0
S960N960NaaCaaT1818AY.290.000284
S960N960NaaCaaT1818AY.850.007689
S960N960NaaCaaT1818B.1.5880.016379
S960N960NaaCaaT1717AY.120.005373
S960N960NaaCaaT1717B.1.80.033531
S960N960NaaCaaT1616AY.330.001068
S960N960NaaCaaT1616B.1.2580.001065
S960N960NaaCaaT1515B.1.1.2140.000832
S960N960DAacGac1414All0.000003
S960N960NaaCaaT1414AY.1160.004015
S960N960NaaCaaT1414AY.470.000435
S960N960NaaCaaT1414B.1.2390.017094
S960N960NaaCaaT1313AY.1200.000483
S960N960NaaCaaT1313B.1.2340.001715
S960N960NaaCaaT1212AY.1180.000752
S960N960NaaCaaT1212AY.390.000297
S960N960NaaCaaT1212B.1.1.5190.000477
S960N960NaaCaaT1111AY.930.003004
S960N960NaaCaaT1111B.1.177.210.000841
S960N960NaaCaaT1111B.1.3510.000327
S960N960NaaCaaT1111B.1.6370.000804
S960N960NaaCaaT1010B.1.6210.000885
S960N960NaaCaaT99AY.1190.000318
S960N960NaaCaaT99AY.260.000255
S960N960NaaCaaT99AY.880.007958
S960N960NaaCaaT99P.1.10.002859
S960N960NaaCaaT88AY.1170.000676
S960N960NaaCaaT88AY.1210.001083
S960N960NaaCaaT88B.1.1.4640.011782
S960N960NaaCaaT88B.1.1390.005865
S960N960NaaCaaT88B.1.177.100.007024
S960N960NaaCaaT88B.1.258.170.000832
S960N960NaaCaaT88B.1.4270.000404
S960N960NaaCaaT88B.1.5960.000697
S960N960SaAcaGc77AY.40.000011
S960N960NaaCaaT77AY.4.2.10.001043
S960N960NaaCaaT77B.1.1.2160.006233
S960N960NaaCaaT77B.1.177.810.001325
S960N960NaaCaaT77B.1.177.860.001284
S960N960NaaCaaT77B.1.4220.005686
S960N960TaAcaCc46All0.000001
S960N960TaACaCG16All0
S960N960TaACaCA16All0
S960N960NaaCaaT66AY.1000.000276
S960N960NaaCaaT66AY.530.001725
S960N960NaaCaaT66AY.7.10.000676
S960N960NaaCaaT66AY.9.2.10.011858
S960N960NaaCaaT66AY.98.10.000291
S960N960NaaCaaT66B.1.1.3170.00247
S960N960NaaCaaT66B.1.1.330.002525
S960N960NaaCaaT66B.1.214.20.003597
S960N960NaaCaaT66B.1.3750.004918
S960N960NaaCaaT66P.1.100.001617
S960N960NaaCaaT66P.1.150.001394
S960N960del2aACa--35All0.000001
S960N960del2AAc--c25All0
S960N960NaaCaaT55AY.610.000524
S960N960NaaCaaT55AY.9.20.000184
S960N960NaaCaaT55AY.920.001436
S960N960NaaCaaT55AY.980.000395
S960N960NaaCaaT55B.1.177.40.001055
S960N960NaaCaaT55B.1.3110.001373
S960N960NaaCaaT55B.1.36.290.002587
S960N960NaaCaaT55B.1.4000.002145
S960N960NaaCaaT55B.1.617.10.000645
S960N960NaaCaaT55R.10.00045
S960N960NaaCaaT44AD.20.000876
S960N960NaaCaaT44AY.420.000161
S960N960NaaCaaT44AY.46.40.000658
S960N960NaaCaaT44AY.750.000224
S960N960NaaCaaT44AY.960.008299
S960N960NaaCaaT44AY.99.20.000369
S960N960NaaCaaT44B.1.1.2070.004728
S960N960NaaCaaT44B.1.1.2220.000816
S960N960NaaCaaT44B.1.1.370.000771
S960N960NaaCaaT44B.1.1.5000.08
S960N960delAAC---44B.1.1770.000053
S960N960NaaCaaT44B.1.466.20.001565
S960N960NaaCaaT44B.1.5610.001588
S960N960NaaCaaT44P.1.140.000191
S960N960NaaCaaT44P.20.000747
S960N960TaACaCG130.055556
S960N960TaACaCA130.055556
S960N960TaAcaCc130.055556
S960N960HAacCac33All0.000001
S960N960YAacTac33All0.000001
S960N960NaaCaaT33AY.1050.001929
S960N960NaaCaaT33AY.1070.001398
S960N960NaaCaaT33AY.270.000194
S960N960NaaCaaT33AY.340.000291
S960N960NaaCaaT33AY.360.000445
S960N960NaaCaaT33AY.39.10.000119
S960N960delAAC---33AY.40.000005
S960N960NaaCaaT33AY.4.20.000065
S960N960delAAC---33AY.50.000062
S960N960NaaCaaT33AY.5.40.00083
S960N960NaaCaaT33AY.540.000286
S960N960NaaCaaT33AY.550.002752
S960N960NaaCaaT33AY.580.002722
S960N960NaaCaaT33AY.910.002191
S960N960NaaCaaT33B.1.1.1570.00274
S960N960NaaCaaT33B.1.1.3180.000905
S960N960DAacGac33B.1.1.70.000003
S960N960del2aACa--23B.1.1.70.000002
S960N960del2AAc--c13B.1.1.70.000001
S960N960KaaCaaG33B.1.20.000026
S960N960NaaCaaT33B.1.5640.001278
S960N960delAAC---33B.1.617.20.000011
S960N960NaaCaaT33C.160.003181
S960N960NaaCaaT33C.36.30.001702
S960N960NaaCaaT33P.1.170.000485
S960N960NaaCaaT33Q.10.000379
S960N960KaaCaaG120.055556
S960N960KaaCaaA120.055556
S960N960NaaCaaT22AY.1130.000285
S960N960NaaCaaT22AY.16.10.00094
S960N960NaaCaaT22AY.230.000139
S960N960NaaCaaT22AY.300.000791
S960N960NaaCaaT22AY.370.000632
S960N960NaaCaaT22AY.39.20.003082
S960N960KaaCaaA22AY.40.000003
S960N960NaaCaaT22AY.410.000588
S960N960delAAC---22AY.430.000009
S960N960NaaCaaT22AY.460.000208
S960N960NaaCaaT22AY.480.00093
S960N960NaaCaaT22AY.75.10.000361
S960N960NaaCaaT22B0.000256
S960N960TaAcaCc22B.10.000018
S960N960delAAC---22B.10.000018
S960N960SaAcaGc22B.1.10.000036
S960N960NaaCaaT22B.1.1.10.000653
S960N960NaaCaaT22B.1.1.1890.003026
S960N960NaaCaaT22B.1.1.1920.004619
S960N960NaaCaaT22B.1.1.280.000622
S960N960delAAC---22B.1.1.3120.003824
S960N960NaaCaaT22B.1.1.3700.025316
S960N960NaaCaaT22B.1.1.4500.068966
S960N960NaaCaaT22B.1.1.500.001358
S960N960NaaCaaT22B.1.1.700.000682
S960N960NaaCaaT22B.1.177.600.000437
S960N960NaaCaaT22B.1.177.770.001452
S960N960NaaCaaT22B.1.2320.001075
S960N960NaaCaaT22B.1.2600.006689
S960N960NaaCaaT22B.1.438.10.000215
S960N960NaaCaaT22B.1.4740.003802
S960N960NaaCaaT22B.1.6000.011696
S960N960KaaCaaA22B.1.617.20.000008
S960N960NaaCaaT22B.1.6200.001892
S960N960NaaCaaT22C.350.001548
S960N960NaaCaaT22C.370.000232
S960N960NaaCaaT22D.20.00015
S960N960NaaCaaT22Y.10.025641
S960N960NaaCaaT11A.2.20.001689
S960N960NaaCaaT11A.2.5.10.004808
S960N960NaaCaaT11A.30.002096
S960N960PAAcCCc11All0
S960N960del1aaCaa-11All0
S960N960IaAcaTc11All0
S960N960NaaCaaT11AY.100.00053
S960N960SaAcaGc11AY.1000.000046
S960N960SaAcaGc11AY.1030.000006
S960N960DAacGac11AY.1030.000006
S960N960NaaCaaT11AY.1060.000335
S960N960NaaCaaT11AY.1100.000113
S960N960NaaCaaT11AY.1140.000231
S960N960NaaCaaT11AY.116.10.000311
S960N960KaaCaaA11AY.1170.000085
S960N960delAAC---11AY.1200.000037
S960N960NaaCaaT11AY.130.000161
S960N960NaaCaaT11AY.160.00038
S960N960SaAcaGc11AY.230.00007
S960N960del1aaCaa-11AY.250.000006
S960N960NaaCaaT11AY.29.10.000221
S960N960SaAcaGc11AY.380.000499
S960N960NaaCaaT11AY.380.000499
S960N960NaaCaaT11AY.4.10.000737
S960N960NaaCaaT11AY.4.30.000842
S960N960NaaCaaT11AY.4.50.000107
S960N960DAacGac11AY.420.00004
S960N960KaaCaaA11AY.430.000004
S960N960DAacGac11AY.430.000004
S960N960KaaCaaG11AY.440.000006
S960N960DAacGac11AY.440.000006
S960N960TaAcaCc11AY.460.000104
S960N960delAAC---11AY.46.20.000635
S960N960NaaCaaT11AY.5.30.000337
S960N960NaaCaaT11AY.510.000909
S960N960NaaCaaT11AY.560.001605
S960N960NaaCaaT11AY.590.00053
S960N960NaaCaaT11AY.600.000938
S960N960SAAcTCc11AY.620.000436
S960N960NaaCaaT11AY.670.000464
S960N960NaaCaaT11AY.680.000274
S960N960NaaCaaT11AY.700.000209
S960N960delAAC---11AY.720.001361
S960N960PAAcCCc11AY.750.000056
S960N960NaaCaaT11AY.830.001724
S960N960delAAC---11AY.90.000068
S960N960NaaCaaT11AY.9.10.000084
S960N960NaaCaaT11AZ.30.00152
S960N960KaaCaaA11B.10.000009
S960N960SaAcaGc11B.10.000009
S960N960delAAC---11B.1.10.000018
S960N960DAacGac11B.1.10.000018
S960N960HAacCac11B.1.10.000018
S960N960NaaCaaT11B.1.1.100.001115
S960N960NaaCaaT11B.1.1.1170.009709
S960N960NaaCaaT11B.1.1.1700.001247
S960N960NaaCaaT11B.1.1.1740.003378
S960N960DAacGac11B.1.1.2220.000204
S960N960delAAC---11B.1.1.2360.006897
S960N960NaaCaaT11B.1.1.3060.000438
S960N960SAACTCT11B.1.1.3060.000438
S960N960NaaCaaT11B.1.1.3190.017544
S960N960NaaCaaT11B.1.1.3360.016667
S960N960NaaCaaT11B.1.1.3390.010526
S960N960NaaCaaT11B.1.1.3440.010753
S960N960NaaCaaT11B.1.1.3480.000796
S960N960NaaCaaT11B.1.1.3630.005988
S960N960NaaCaaT11B.1.1.3720.000689
S960N960NaaCaaT11B.1.1.4130.006897
S960N960NaaCaaT11B.1.1.4160.000905
S960N960NaaCaaT11B.1.1.4860.001577
S960N960NaaCaaT11B.1.1.5170.006803
S960N960DAacGac11B.1.1.5190.00004
S960N960YAacTac11B.1.1.5190.00004
S960N960NaaCaaT11B.1.1.5250.005464
S960N960NaaCaaT11B.1.1.5280.004808
S960N960SaAcaGc11B.1.1.70.000001
S960N960KaaCaaA11B.1.1.70.000001
S960N960delAAC---11B.1.1.700.000341
S960N960NaaCaaT11B.1.1110.001175
S960N960HAacCac11B.1.1600.000031
S960N960NaaCaaT11B.1.160.200.008929
S960N960NaaCaaT11B.1.160.260.002421
S960N960NaaCaaT11B.1.160.80.001289
S960N960delAAC---11B.1.1610.017241
S960N960KaaCaaG11B.1.1770.000013
S960N960DAacGac11B.1.1770.000013
S960N960SaAcaGc11B.1.1770.000013
S960N960delAAC---11B.1.177.100.000878
S960N960NaaCaaT11B.1.177.120.000152
S960N960delAAC---11B.1.177.150.000631
S960N960KaaCaaA11B.1.177.160.000664
S960N960delAAC---11B.1.177.170.000821
S960N960delAAC---11B.1.177.210.000076
S960N960delAAC---11B.1.177.40.000211
S960N960NaaCaaT11B.1.177.410.0025
S960N960NaaCaaT11B.1.177.430.001477
S960N960NaaCaaT11B.1.177.520.001757
S960N960NaaCaaT11B.1.177.540.000606
S960N960delAAC---11B.1.177.580.001332
S960N960KaaCaaA11B.1.177.600.000218
S960N960NaaCaaT11B.1.177.620.001192
S960N960delAAC---11B.1.177.630.002703
S960N960NaaCaaT11B.1.177.630.002703
S960N960delAAC---11B.1.177.70.000165
S960N960NaaCaaT11B.1.177.70.000165
S960N960del2aACa--11B.1.20.000009
S960N960NaaCaaT11B.1.2100.002132
S960N960NaaCaaT11B.1.2370.004975
S960N960NaaCaaT11B.1.2400.000216
S960N960NaaCaaT11B.1.2470.014925
S960N960NaaCaaT11B.1.258.30.001675
S960N960NaaCaaT11B.1.3360.002439
S960N960YAacTac11B.1.3380.008621
S960N960NaaCaaT11B.1.3490.000715
S960N960NaaCaaT11B.1.351.30.000876
S960N960NaaCaaT11B.1.351.50.0006
S960N960NaaCaaT11B.1.3560.001727
S960N960NaaCaaT11B.1.36.100.004785
S960N960delAAC---11B.1.36.170.000494
S960N960NaaCaaT11B.1.36.80.001
S960N960YAacTac11B.1.3690.000285
S960N960KaaCaaA11B.1.4150.014286
S960N960NaaCaaT11B.1.4200.010417
S960N960NaaCaaT11B.1.4260.001009
S960N960KaaCaaA11B.1.4290.000024
S960N960NaaCaaT11B.1.4560.003268
S960N960KaaCaaA11B.1.4590.004082
S960N960NaaCaaT11B.1.4800.002488
S960N960NaaCaaT11B.1.4980.020408
S960N960NaaCaaT11B.1.5050.004386
S960N960NaaCaaT11B.1.5170.000427
S960N960DAacGac11B.1.5260.000024
S960N960NaaCaaT11B.1.5270.003704
S960N960NaaCaaT11B.1.5700.002941
S960N960NaaCaaT11B.1.5950.000261
S960N960NaaCaaT11B.1.5970.00463
S960N960NaaCaaT11B.1.6090.000479
S960N960del2AAc--c11B.1.617.20.000004
S960N960IaAcaTc11B.1.617.20.000004
S960N960DAacGac11B.1.6180.004032
S960N960NaaCaaT11B.1.6250.002353
S960N960NaaCaaT11B.310.003731
S960N960NaaCaaT11B.400.000364
S960N960NaaCaaT11B.60.00091
S960N960NaaCaaT11C.330.058824
S960N960NaaCaaT11C.360.000911
S960N960KaaCaaA11D.20.000075
S960N960NaaCaaT11N.30.005814
S960N960NaaCaaT11N.50.001767
S960N960DAacGac11P.10.000016
S960N960HAacCac11P.10.000016
S960N960NaaCaaT11P.1.20.001156
S960N960NaaCaaT11P.1.70.000319
S960N960NaaCaaT11P.30.001595
S960N960NaaCaaT11Q.40.000455
S960N960NaaCaaT11Q.80.000165
S960N960NaaCaaT11W.40.001351