CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 952

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S952V952VsyngtCgtT380237220.97895824416-24418
S952V952VsyngtCgtA3802740.019463424416-24418
S952V952VsyngtCgtG380260.0015781224416-24418
S952V952FnonsynGtcTtc149149124416-24418
S952V952InonsynGtcAtc8989124416-24418
S952V952deldelGTC---6969124416-24418
S952V952AnonsyngTcgCc3030124416-24418
S952V952LnonsynGtcCtc1070.724416-24418
S952V952LnonsynGtCTtA1020.224416-24418
S952V952LnonsynGtCCtT1010.124416-24418
S952V952NnonsynGTcAAc99124416-24418
S952V952del2delGTc--c650.83333324416-24418
S952V952DnonsyngTcgAc650.83333324416-24418
S952V952del2delgTCg--610.16666724416-24418
S952V952DnonsyngTCgAT610.16666724416-24418
S952V952del1delgTcg-c320.66666724416-24418
S952V952del1delGtc-tc310.33333324416-24418
S952V952GnonsyngTcgGc22124416-24418
S952V952SnonsynGTcAGc210.524416-24418
S952V952SnonsynGTcTCc210.524416-24418
S952V952TnonsynGTcACc11124416-24418
S952V952HnonsynGTcCAc11124416-24418

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S952V952VgtCgtT37223802All0.000712
S952V952VgtCgtA743802All0.000014
S952V952VgtCgtG63802All0.000001
S952V952VgtCgtT16381655B.1.1.70.001466
S952V952VgtCgtA171655B.1.1.70.000015
S952V952VgtCgtT315316AY.30.003133
S952V952VgtCgtA1316AY.30.00001
S952V952VgtCgtT238241AY.40.00037
S952V952VgtCgtG2241AY.40.000003
S952V952VgtCgtA1241AY.40.000002
S952V952VgtCgtT151151B.1.6230.081009
S952V952FGtcTtc149149All0.000028
S952V952VgtCgtT124124B.1.2580.008252
S952V952VgtCgtT105105AY.910.076698
S952V952VgtCgtT8693B.10.000788
S952V952VgtCgtA793B.10.000064
S952V952IGtcAtc8989All0.000017
S952V952VgtCgtT8181B.1.1.5170.55102
S952V952VgtCgtT7981B.1.617.20.000297
S952V952VgtCgtA281B.1.617.20.000008
S952V952delGTC---6969All0.000013
S952V952FGtcTtc6060B.1.10.001088
S952V952VgtCgtT5959B.1.1.2140.003272
S952V952VgtCgtT5757AY.440.000347
S952V952VgtCgtT4545B.1.1770.000593
S952V952VgtCgtT3941B.1.10.000707
S952V952VgtCgtA241B.1.10.000036
S952V952VgtCgtT3840B.1.20.000335
S952V952VgtCgtA240B.1.20.000018
S952V952VgtCgtT3737P.10.000583
S952V952IGtcAtc3535B.1.1.70.000031
S952V952VgtCgtT3131AY.1030.000192
S952V952AgTcgCc3030All0.000006
S952V952VgtCgtT2929B.1.1.1890.043873
S952V952VgtCgtT2929B.1.1.2220.005916
S952V952VgtCgtT2828AY.680.007665
S952V952VgtCgtT2828B.1.3110.007688
S952V952VgtCgtT2027AY.430.000089
S952V952VgtCgtA427AY.430.000018
S952V952VgtCgtG327AY.430.000013
S952V952delGTC---2727B.1.1.70.000024
S952V952VgtCgtT2525AY.1130.00356
S952V952FGtcTtc2222AY.40.000034
S952V952VgtCgtT2121B.1.1.4200.021127
S952V952VgtCgtT1919B.1.1.2840.002041
S952V952VgtCgtT1919B.1.177.210.001453
S952V952IGtcAtc1818AY.40.000028
S952V952VgtCgtT1818P.1.170.002912
S952V952FGtcTtc1717B.1.1.70.000015
S952V952VgtCgtT1314B.1.4290.000306
S952V952VgtCgtA114B.1.4290.000024
S952V952VgtCgtT1313AY.250.000078
S952V952VgtCgtA911AY.260.000255
S952V952VgtCgtT211AY.260.000057
S952V952VgtCgtT1111B.1.177.860.002018
S952V952LGtcCtc710All0.000001
S952V952LGtCTtA210All0
S952V952LGtCCtT110All0
S952V952VgtCgtT1010AY.4.2.10.00149
S952V952NGTcAAc99All0.000002
S952V952VgtCgtT99B.1.1.5190.000357
S952V952VgtCgtT99B.1.2210.000639
S952V952VgtCgtT99B.1.2340.001187
S952V952VgtCgtT99Q.10.001137
S952V952VgtCgtT88AY.1000.000368
S952V952VgtCgtT88AY.420.000322
S952V952VgtCgtT58AY.470.000156
S952V952VgtCgtA38AY.470.000093
S952V952NGTcAAc88B.1.1.70.000007
S952V952VgtCgtT88B.1.4270.000404
S952V952VgtCgtT77AY.340.000679
S952V952VgtCgtT77AY.39.10.000277
S952V952VgtCgtT67AY.4.20.00013
S952V952VgtCgtA17AY.4.20.000022
S952V952VgtCgtT77AY.50.000145
S952V952delGTC---77B.1.1770.000092
S952V952VgtCgtT77B.1.177.570.001967
S952V952del2GTc--c56All0.000001
S952V952DgTcgAc56All0.000001
S952V952del2gTCg--16All0
S952V952DgTCgAT16All0
S952V952VgtCgtT66AY.1020.000159
S952V952AgTcgCc66AY.1180.000376
S952V952VgtCgtT55AY.200.000194
S952V952VgtCgtT35AY.620.001307
S952V952VgtCgtA25AY.620.000871
S952V952VgtCgtT55AY.750.00028
S952V952VgtCgtT55B.1.1.280.001556
S952V952VgtCgtT55B.1.1.3180.001509
S952V952VgtCgtA55B.1.1.500.003394
S952V952VgtCgtT55B.1.1600.000156
S952V952VgtCgtT55B.1.5250.000566
S952V952VgtCgtA55M.10.116279
S952V952AgTcgCc55P.10.000079
S952V952VgtCgtT44AY.1190.000141
S952V952VgtCgtT44AY.240.001724
S952V952VgtCgtT44AY.3.10.000341
S952V952delGTC---44AY.40.000006
S952V952VgtCgtT44B.1.1.2530.010025
S952V952AgTcgCc44B.1.1.70.000004
S952V952del2GTc--c34B.1.1.70.000003
S952V952del2gTCg--14B.1.1.70.000001
S952V952FGtcTtc44B.1.177.350.002764
S952V952VgtCgtT44B.1.3510.000119
S952V952FGtcTtc44B.1.617.20.000015
S952V952VgtCgtT44P.20.000747
S952V952del1gTcg-c23All0
S952V952del1Gtc-tc13All0
S952V952VgtCgtT33AY.1160.00086
S952V952VgtCgtT23AY.1170.000169
S952V952VgtCgtA13AY.1170.000085
S952V952FGtcTtc33AY.1180.000188
S952V952VgtCgtT33AY.1180.000188
S952V952FGtcTtc33AY.120.000948
S952V952VgtCgtT33AY.1200.000112
S952V952VgtCgtT33AY.290.000047
S952V952FGtcTtc33AY.430.000013
S952V952FGtcTtc33AY.440.000018
S952V952IGtcAtc33AY.750.000168
S952V952VgtCgtT23AY.99.20.000184
S952V952VgtCgtA13AY.99.20.000092
S952V952VgtCgtT33B.1.2430.000209
S952V952VgtCgtT33B.1.438.10.000322
S952V952VgtCgtT33B.1.466.20.001174
S952V952VgtCgtT33B.1.5260.000071
S952V952VgtCgtT33B.1.5950.000783
S952V952VgtCgtT33B.1.5960.000261
S952V952VgtCgtT33B.1.6090.001438
S952V952delGTC---33B.1.617.20.000011
S952V952VgtCgtT33C.300.005181
S952V952IGtcAtc33C.36.30.001702
S952V952VgtCgtT33C.370.000348
S952V952IGtcAtc33P.10.000047
S952V952VgtCgtT33P.1.140.000143
S952V952AgTcgCc220.111111
S952V952SGTcTCc120.055556
S952V952LGtcCtc120.055556
S952V952SGTcAGc120.055556
S952V952LGtCCtT120.055556
S952V952GgTcgGc22All0
S952V952SGTcTCc12All0
S952V952SGTcAGc12All0
S952V952IGtcAtc22AY.1020.000053
S952V952FGtcTtc22AY.1030.000012
S952V952VgtCgtA12AY.1210.000135
S952V952VgtCgtT12AY.1210.000135
S952V952VgtCgtG12AY.130.000161
S952V952VgtCgtT12AY.130.000161
S952V952VgtCgtT22AY.230.000139
S952V952AgTcgCc22AY.250.000012
S952V952IGtcAtc22AY.250.000012
S952V952FGtcTtc22AY.30.00002
S952V952FGtcTtc22AY.340.000194
S952V952FGtcTtc22AY.4.20.000043
S952V952AgTcgCc22AY.430.000009
S952V952delGTC---22AY.430.000009
S952V952AgTcgCc22AY.440.000012
S952V952VgtCgtA12AY.450.000122
S952V952VgtCgtT12AY.450.000122
S952V952VgtCgtT22AY.460.000208
S952V952VgtCgtT22AY.46.60.000144
S952V952delGTC---22AY.50.000041
S952V952VgtCgtT22AY.7.10.000225
S952V952VgtCgtT22AY.890.009804
S952V952FGtcTtc22B.10.000018
S952V952IGtcAtc22B.10.000018
S952V952delGTC---22B.10.000018
S952V952VgtCgtT22B.1.1.1220.090909
S952V952VgtCgtT22B.1.1.2190.01
S952V952VgtCgtT22B.1.1.3120.003824
S952V952delGTC---22B.1.1.3120.003824
S952V952VgtCgtT22B.1.1.3710.020833
S952V952VgtCgtT22B.1.1.4340.000697
S952V952LGtcCtc22B.1.1.70.000002
S952V952VgtCgtT22B.1.1.700.000682
S952V952VgtCgtT22B.1.140.035088
S952V952VgtCgtT22B.1.160.300.005952
S952V952FGtcTtc22B.1.177.540.001213
S952V952delGTC---22B.1.177.70.00033
S952V952VgtCgtT12B.1.351.20.000303
S952V952VgtCgtA12B.1.351.20.000303
S952V952VgtCgtT22B.1.360.000292
S952V952FGtcTtc22B.1.36.90.006431
S952V952IGtcAtc22B.1.617.20.000008
S952V952VgtCgtT22C.36.30.001134
S952V952VgtCgtT22P.1.150.000465
S952V952VgtCgtT22P.1.160.000748
S952V952VgtCgtT22R.10.00018
S952V952IGtcAtc110.055556
S952V952FGtcTtc110.055556
S952V952TGTcACc110.055556
S952V952GgTcgGc110.055556
S952V952VgtCgtT110.055556
S952V952DgTcgAc110.055556
S952V952VgtCgtT11A0.000387
S952V952FGtcTtc11A0.000387
S952V952VgtCgtT11A.2.50.000499
S952V952VgtCgtT11A.2.5.30.010309
S952V952VgtCgtT11AD.10.004115
S952V952HGTcCAc11All0
S952V952TGTcACc11All0
S952V952VgtCgtA11AU.20.002421
S952V952IGtcAtc11AY.1000.000046
S952V952IGtcAtc11AY.1030.000006
S952V952IGtcAtc11AY.1100.000113
S952V952VgtCgtT11AY.1110.000183
S952V952VgtCgtT11AY.1140.000231
S952V952AgTcgCc11AY.1190.000035
S952V952FGtcTtc11AY.1200.000037
S952V952IGtcAtc11AY.1210.000135
S952V952IGtcAtc11AY.200.000039
S952V952FGtcTtc11AY.200.000039
S952V952AgTcgCc11AY.260.000028
S952V952FGtcTtc11AY.290.000016
S952V952LGtCTtA11AY.30.00001
S952V952VgtCgtT11AY.320.000532
S952V952VgtCgtT11AY.330.000067
S952V952IGtcAtc11AY.360.000148
S952V952VgtCgtT11AY.390.000025
S952V952IGtcAtc11AY.390.000025
S952V952LGtcCtc11AY.40.000002
S952V952VgtCgtT11AY.400.000964
S952V952VgtCgtA11AY.410.000294
S952V952IGtcAtc11AY.420.00004
S952V952del2GTc--c11AY.430.000004
S952V952IGtcAtc11AY.430.000004
S952V952del1Gtc-tc11AY.430.000004
S952V952NGTcAAc11AY.430.000004
S952V952DgTCgAT11AY.440.000006
S952V952delGTC---11AY.46.20.000635
S952V952IGtcAtc11AY.46.60.000072
S952V952VgtCgtT11AY.5.40.000277
S952V952VgtCgtT11AY.530.000288
S952V952VgtCgtT11AY.590.00053
S952V952VgtCgtT11AY.610.000105
S952V952VgtCgtT11AY.75.10.00018
S952V952VgtCgtT11AY.780.001541
S952V952VgtCgtA11AY.790.001211
S952V952delGTC---11AY.810.001992
S952V952FGtcTtc11AY.840.000437
S952V952IGtcAtc11AY.850.000427
S952V952VgtCgtT11AY.90.000068
S952V952VgtCgtT11AY.9.10.000084
S952V952VgtCgtT11AY.98.10.000048
S952V952VgtCgtT11B0.000128
S952V952FGtcTtc11B0.000128
S952V952LGtcCtc11B.10.000009
S952V952DgTcgAc11B.1.10.000018
S952V952delGTC---11B.1.10.000018
S952V952delGTC---11B.1.1.1590.004673
S952V952VgtCgtT11B.1.1.1920.002309
S952V952LGtCTtA11B.1.1.2160.00089
S952V952delGTC---11B.1.1.2360.006897
S952V952VgtCgtT11B.1.1.2910.000742
S952V952VgtCgtT11B.1.1.3030.002762
S952V952IGtcAtc11B.1.1.3060.000438
S952V952VgtCgtA11B.1.1.330.000421
S952V952IGtcAtc11B.1.1.3380.017241
S952V952VgtCgtT11B.1.1.3720.000689
S952V952VgtCgtA11B.1.1.3770.001381
S952V952VgtCgtT11B.1.1.3880.045455
S952V952VgtCgtT11B.1.1.390.00051
S952V952VgtCgtT11B.1.1.4230.0625
S952V952FGtcTtc11B.1.1.4480.002033
S952V952DgTcgAc11B.1.1.5190.00004
S952V952VgtCgtT11B.1.1.5210.005348
S952V952VgtCgtT11B.1.1.5230.001563
S952V952FGtcTtc11B.1.1.5260.003546
S952V952del1gTcg-c11B.1.1.70.000001
S952V952delGTC---11B.1.1.700.000341
S952V952AgTcgCc11B.1.1.700.000341
S952V952VgtCgtT11B.1.110.30.000718
S952V952VgtCgtT11B.1.1190.010526
S952V952FGtcTtc11B.1.1470.000756
S952V952delGTC---11B.1.1610.017241
S952V952HGTcCAc11B.1.1770.000013
S952V952delGTC---11B.1.177.150.000631
S952V952VgtCgtT11B.1.177.160.000664
S952V952delGTC---11B.1.177.170.000821
S952V952VgtCgtT11B.1.177.170.000821
S952V952VgtCgtT11B.1.177.190.001431
S952V952delGTC---11B.1.177.210.000076
S952V952FGtcTtc11B.1.177.420.000894
S952V952VgtCgtT11B.1.177.440.000519
S952V952delGTC---11B.1.177.540.000606
S952V952VgtCgtT11B.1.177.560.000668
S952V952delGTC---11B.1.177.580.001332
S952V952del2GTc--c11B.1.177.60.000977
S952V952VgtCgtT11B.1.177.600.000218
S952V952delGTC---11B.1.177.630.002703
S952V952delGTC---11B.1.177.690.001484
S952V952DgTcgAc11B.1.177.690.001484
S952V952VgtCgtT11B.1.177.730.000566
S952V952VgtCgtT11B.1.177.750.001041
S952V952LGtcCtc11B.1.20.000009
S952V952AgTcgCc11B.1.20.000009
S952V952VgtCgtT11B.1.214.20.0006
S952V952delGTC---11B.1.230.006061
S952V952VgtCgtT11B.1.2320.000537
S952V952LGtcCtc11B.1.2340.000132
S952V952IGtcAtc11B.1.2580.000067
S952V952VgtCgtT11B.1.258.110.000396
S952V952VgtCgtT11B.1.258.170.000104
S952V952VgtCgtA11B.1.3010.005917
S952V952VgtCgtT11B.1.3490.000715
S952V952DgTcgAc11B.1.360.000146
S952V952VgtCgtT11B.1.36.100.004785
S952V952VgtCgtT11B.1.36.160.001425
S952V952delGTC---11B.1.36.170.000494
S952V952FGtcTtc11B.1.36.360.000602
S952V952VgtCgtT11B.1.3610.001289
S952V952VgtCgtT11B.1.3670.000792
S952V952GgTcgGc11B.1.3990.001934
S952V952VgtCgtT11B.1.4200.010417
S952V952VgtCgtT11B.1.4280.00102
S952V952FGtcTtc11B.1.4290.000024
S952V952del1gTcg-c11B.1.4590.004082
S952V952IGtcAtc11B.1.4620.007246
S952V952VgtCgtT11B.1.4700.001404
S952V952VgtCgtT11B.1.5470.02439
S952V952VgtCgtT11B.1.5610.000397
S952V952VgtCgtT11B.1.5740.002151
S952V952IGtcAtc11B.1.596.10.009346
S952V952VgtCgtT11B.1.5970.00463
S952V952VgtCgtT11B.1.6000.005848
S952V952IGtcAtc11B.1.6040.017241
S952V952VgtCgtT11B.1.617.10.000129
S952V952delGTC---11B.1.617.10.000129
S952V952AgTcgCc11B.1.617.20.000004
S952V952VgtCgtT11B.1.6200.000946
S952V952FGtcTtc11B.1.6320.006711
S952V952VgtCgtT11B.1.6370.000073
S952V952VgtCgtT11B.1.9.50.005682
S952V952AgTcgCc11C.10.002392
S952V952VgtCgtT11C.350.000774
S952V952VgtCgtA11D.20.000075
S952V952IGtcAtc11D.20.000075
S952V952FGtcTtc11P.10.000016
S952V952VgtCgtT11P.1.10.000318
S952V952AgTcgCc11P.1.120.000484
S952V952FGtcTtc11P.1.120.000484
S952V952VgtCgtT11P.30.001595
S952V952VgtCgtT11Q.30.000145
S952V952delGTC---11Q.80.000165
S952V952VgtCgtT11Z.10.00289