CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 952 | V952V | syn | gtC | gtT | 3802 | 3722 | 0.978958 | 24416-24418 | |
S | 952 | V952V | syn | gtC | gtA | 3802 | 74 | 0.0194634 | 24416-24418 | |
S | 952 | V952V | syn | gtC | gtG | 3802 | 6 | 0.00157812 | 24416-24418 | |
S | 952 | V952F | nonsyn | Gtc | Ttc | 149 | 149 | 1 | 24416-24418 | |
S | 952 | V952I | nonsyn | Gtc | Atc | 89 | 89 | 1 | 24416-24418 | |
S | 952 | V952del | del | GTC | --- | 69 | 69 | 1 | 24416-24418 | |
S | 952 | V952A | nonsyn | gTc | gCc | 30 | 30 | 1 | 24416-24418 | |
S | 952 | V952L | nonsyn | Gtc | Ctc | 10 | 7 | 0.7 | 24416-24418 | |
S | 952 | V952L | nonsyn | GtC | TtA | 10 | 2 | 0.2 | 24416-24418 | |
S | 952 | V952L | nonsyn | GtC | CtT | 10 | 1 | 0.1 | 24416-24418 | |
S | 952 | V952N | nonsyn | GTc | AAc | 9 | 9 | 1 | 24416-24418 | |
S | 952 | V952del2 | del | GTc | --c | 6 | 5 | 0.833333 | 24416-24418 | |
S | 952 | V952D | nonsyn | gTc | gAc | 6 | 5 | 0.833333 | 24416-24418 | |
S | 952 | V952del2 | del | gTC | g-- | 6 | 1 | 0.166667 | 24416-24418 | |
S | 952 | V952D | nonsyn | gTC | gAT | 6 | 1 | 0.166667 | 24416-24418 | |
S | 952 | V952del1 | del | gTc | g-c | 3 | 2 | 0.666667 | 24416-24418 | |
S | 952 | V952del1 | del | Gtc | -tc | 3 | 1 | 0.333333 | 24416-24418 | |
S | 952 | V952G | nonsyn | gTc | gGc | 2 | 2 | 1 | 24416-24418 | |
S | 952 | V952S | nonsyn | GTc | AGc | 2 | 1 | 0.5 | 24416-24418 | |
S | 952 | V952S | nonsyn | GTc | TCc | 2 | 1 | 0.5 | 24416-24418 | |
S | 952 | V952T | nonsyn | GTc | ACc | 1 | 1 | 1 | 24416-24418 | |
S | 952 | V952H | nonsyn | GTc | CAc | 1 | 1 | 1 | 24416-24418 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 952 | V952V | gtC | gtT | 3722 | 3802 | All | 0.000712 |
S | 952 | V952V | gtC | gtA | 74 | 3802 | All | 0.000014 |
S | 952 | V952V | gtC | gtG | 6 | 3802 | All | 0.000001 |
S | 952 | V952V | gtC | gtT | 1638 | 1655 | B.1.1.7 | 0.001466 |
S | 952 | V952V | gtC | gtA | 17 | 1655 | B.1.1.7 | 0.000015 |
S | 952 | V952V | gtC | gtT | 315 | 316 | AY.3 | 0.003133 |
S | 952 | V952V | gtC | gtA | 1 | 316 | AY.3 | 0.00001 |
S | 952 | V952V | gtC | gtT | 238 | 241 | AY.4 | 0.00037 |
S | 952 | V952V | gtC | gtG | 2 | 241 | AY.4 | 0.000003 |
S | 952 | V952V | gtC | gtA | 1 | 241 | AY.4 | 0.000002 |
S | 952 | V952V | gtC | gtT | 151 | 151 | B.1.623 | 0.081009 |
S | 952 | V952F | Gtc | Ttc | 149 | 149 | All | 0.000028 |
S | 952 | V952V | gtC | gtT | 124 | 124 | B.1.258 | 0.008252 |
S | 952 | V952V | gtC | gtT | 105 | 105 | AY.91 | 0.076698 |
S | 952 | V952V | gtC | gtT | 86 | 93 | B.1 | 0.000788 |
S | 952 | V952V | gtC | gtA | 7 | 93 | B.1 | 0.000064 |
S | 952 | V952I | Gtc | Atc | 89 | 89 | All | 0.000017 |
S | 952 | V952V | gtC | gtT | 81 | 81 | B.1.1.517 | 0.55102 |
S | 952 | V952V | gtC | gtT | 79 | 81 | B.1.617.2 | 0.000297 |
S | 952 | V952V | gtC | gtA | 2 | 81 | B.1.617.2 | 0.000008 |
S | 952 | V952del | GTC | --- | 69 | 69 | All | 0.000013 |
S | 952 | V952F | Gtc | Ttc | 60 | 60 | B.1.1 | 0.001088 |
S | 952 | V952V | gtC | gtT | 59 | 59 | B.1.1.214 | 0.003272 |
S | 952 | V952V | gtC | gtT | 57 | 57 | AY.44 | 0.000347 |
S | 952 | V952V | gtC | gtT | 45 | 45 | B.1.177 | 0.000593 |
S | 952 | V952V | gtC | gtT | 39 | 41 | B.1.1 | 0.000707 |
S | 952 | V952V | gtC | gtA | 2 | 41 | B.1.1 | 0.000036 |
S | 952 | V952V | gtC | gtT | 38 | 40 | B.1.2 | 0.000335 |
S | 952 | V952V | gtC | gtA | 2 | 40 | B.1.2 | 0.000018 |
S | 952 | V952V | gtC | gtT | 37 | 37 | P.1 | 0.000583 |
S | 952 | V952I | Gtc | Atc | 35 | 35 | B.1.1.7 | 0.000031 |
S | 952 | V952V | gtC | gtT | 31 | 31 | AY.103 | 0.000192 |
S | 952 | V952A | gTc | gCc | 30 | 30 | All | 0.000006 |
S | 952 | V952V | gtC | gtT | 29 | 29 | B.1.1.189 | 0.043873 |
S | 952 | V952V | gtC | gtT | 29 | 29 | B.1.1.222 | 0.005916 |
S | 952 | V952V | gtC | gtT | 28 | 28 | AY.68 | 0.007665 |
S | 952 | V952V | gtC | gtT | 28 | 28 | B.1.311 | 0.007688 |
S | 952 | V952V | gtC | gtT | 20 | 27 | AY.43 | 0.000089 |
S | 952 | V952V | gtC | gtA | 4 | 27 | AY.43 | 0.000018 |
S | 952 | V952V | gtC | gtG | 3 | 27 | AY.43 | 0.000013 |
S | 952 | V952del | GTC | --- | 27 | 27 | B.1.1.7 | 0.000024 |
S | 952 | V952V | gtC | gtT | 25 | 25 | AY.113 | 0.00356 |
S | 952 | V952F | Gtc | Ttc | 22 | 22 | AY.4 | 0.000034 |
S | 952 | V952V | gtC | gtT | 21 | 21 | B.1.1.420 | 0.021127 |
S | 952 | V952V | gtC | gtT | 19 | 19 | B.1.1.284 | 0.002041 |
S | 952 | V952V | gtC | gtT | 19 | 19 | B.1.177.21 | 0.001453 |
S | 952 | V952I | Gtc | Atc | 18 | 18 | AY.4 | 0.000028 |
S | 952 | V952V | gtC | gtT | 18 | 18 | P.1.17 | 0.002912 |
S | 952 | V952F | Gtc | Ttc | 17 | 17 | B.1.1.7 | 0.000015 |
S | 952 | V952V | gtC | gtT | 13 | 14 | B.1.429 | 0.000306 |
S | 952 | V952V | gtC | gtA | 1 | 14 | B.1.429 | 0.000024 |
S | 952 | V952V | gtC | gtT | 13 | 13 | AY.25 | 0.000078 |
S | 952 | V952V | gtC | gtA | 9 | 11 | AY.26 | 0.000255 |
S | 952 | V952V | gtC | gtT | 2 | 11 | AY.26 | 0.000057 |
S | 952 | V952V | gtC | gtT | 11 | 11 | B.1.177.86 | 0.002018 |
S | 952 | V952L | Gtc | Ctc | 7 | 10 | All | 0.000001 |
S | 952 | V952L | GtC | TtA | 2 | 10 | All | 0 |
S | 952 | V952L | GtC | CtT | 1 | 10 | All | 0 |
S | 952 | V952V | gtC | gtT | 10 | 10 | AY.4.2.1 | 0.00149 |
S | 952 | V952N | GTc | AAc | 9 | 9 | All | 0.000002 |
S | 952 | V952V | gtC | gtT | 9 | 9 | B.1.1.519 | 0.000357 |
S | 952 | V952V | gtC | gtT | 9 | 9 | B.1.221 | 0.000639 |
S | 952 | V952V | gtC | gtT | 9 | 9 | B.1.234 | 0.001187 |
S | 952 | V952V | gtC | gtT | 9 | 9 | Q.1 | 0.001137 |
S | 952 | V952V | gtC | gtT | 8 | 8 | AY.100 | 0.000368 |
S | 952 | V952V | gtC | gtT | 8 | 8 | AY.42 | 0.000322 |
S | 952 | V952V | gtC | gtT | 5 | 8 | AY.47 | 0.000156 |
S | 952 | V952V | gtC | gtA | 3 | 8 | AY.47 | 0.000093 |
S | 952 | V952N | GTc | AAc | 8 | 8 | B.1.1.7 | 0.000007 |
S | 952 | V952V | gtC | gtT | 8 | 8 | B.1.427 | 0.000404 |
S | 952 | V952V | gtC | gtT | 7 | 7 | AY.34 | 0.000679 |
S | 952 | V952V | gtC | gtT | 7 | 7 | AY.39.1 | 0.000277 |
S | 952 | V952V | gtC | gtT | 6 | 7 | AY.4.2 | 0.00013 |
S | 952 | V952V | gtC | gtA | 1 | 7 | AY.4.2 | 0.000022 |
S | 952 | V952V | gtC | gtT | 7 | 7 | AY.5 | 0.000145 |
S | 952 | V952del | GTC | --- | 7 | 7 | B.1.177 | 0.000092 |
S | 952 | V952V | gtC | gtT | 7 | 7 | B.1.177.57 | 0.001967 |
S | 952 | V952del2 | GTc | --c | 5 | 6 | All | 0.000001 |
S | 952 | V952D | gTc | gAc | 5 | 6 | All | 0.000001 |
S | 952 | V952del2 | gTC | g-- | 1 | 6 | All | 0 |
S | 952 | V952D | gTC | gAT | 1 | 6 | All | 0 |
S | 952 | V952V | gtC | gtT | 6 | 6 | AY.102 | 0.000159 |
S | 952 | V952A | gTc | gCc | 6 | 6 | AY.118 | 0.000376 |
S | 952 | V952V | gtC | gtT | 5 | 5 | AY.20 | 0.000194 |
S | 952 | V952V | gtC | gtT | 3 | 5 | AY.62 | 0.001307 |
S | 952 | V952V | gtC | gtA | 2 | 5 | AY.62 | 0.000871 |
S | 952 | V952V | gtC | gtT | 5 | 5 | AY.75 | 0.00028 |
S | 952 | V952V | gtC | gtT | 5 | 5 | B.1.1.28 | 0.001556 |
S | 952 | V952V | gtC | gtT | 5 | 5 | B.1.1.318 | 0.001509 |
S | 952 | V952V | gtC | gtA | 5 | 5 | B.1.1.50 | 0.003394 |
S | 952 | V952V | gtC | gtT | 5 | 5 | B.1.160 | 0.000156 |
S | 952 | V952V | gtC | gtT | 5 | 5 | B.1.525 | 0.000566 |
S | 952 | V952V | gtC | gtA | 5 | 5 | M.1 | 0.116279 |
S | 952 | V952A | gTc | gCc | 5 | 5 | P.1 | 0.000079 |
S | 952 | V952V | gtC | gtT | 4 | 4 | AY.119 | 0.000141 |
S | 952 | V952V | gtC | gtT | 4 | 4 | AY.24 | 0.001724 |
S | 952 | V952V | gtC | gtT | 4 | 4 | AY.3.1 | 0.000341 |
S | 952 | V952del | GTC | --- | 4 | 4 | AY.4 | 0.000006 |
S | 952 | V952V | gtC | gtT | 4 | 4 | B.1.1.253 | 0.010025 |
S | 952 | V952A | gTc | gCc | 4 | 4 | B.1.1.7 | 0.000004 |
S | 952 | V952del2 | GTc | --c | 3 | 4 | B.1.1.7 | 0.000003 |
S | 952 | V952del2 | gTC | g-- | 1 | 4 | B.1.1.7 | 0.000001 |
S | 952 | V952F | Gtc | Ttc | 4 | 4 | B.1.177.35 | 0.002764 |
S | 952 | V952V | gtC | gtT | 4 | 4 | B.1.351 | 0.000119 |
S | 952 | V952F | Gtc | Ttc | 4 | 4 | B.1.617.2 | 0.000015 |
S | 952 | V952V | gtC | gtT | 4 | 4 | P.2 | 0.000747 |
S | 952 | V952del1 | gTc | g-c | 2 | 3 | All | 0 |
S | 952 | V952del1 | Gtc | -tc | 1 | 3 | All | 0 |
S | 952 | V952V | gtC | gtT | 3 | 3 | AY.116 | 0.00086 |
S | 952 | V952V | gtC | gtT | 2 | 3 | AY.117 | 0.000169 |
S | 952 | V952V | gtC | gtA | 1 | 3 | AY.117 | 0.000085 |
S | 952 | V952F | Gtc | Ttc | 3 | 3 | AY.118 | 0.000188 |
S | 952 | V952V | gtC | gtT | 3 | 3 | AY.118 | 0.000188 |
S | 952 | V952F | Gtc | Ttc | 3 | 3 | AY.12 | 0.000948 |
S | 952 | V952V | gtC | gtT | 3 | 3 | AY.120 | 0.000112 |
S | 952 | V952V | gtC | gtT | 3 | 3 | AY.29 | 0.000047 |
S | 952 | V952F | Gtc | Ttc | 3 | 3 | AY.43 | 0.000013 |
S | 952 | V952F | Gtc | Ttc | 3 | 3 | AY.44 | 0.000018 |
S | 952 | V952I | Gtc | Atc | 3 | 3 | AY.75 | 0.000168 |
S | 952 | V952V | gtC | gtT | 2 | 3 | AY.99.2 | 0.000184 |
S | 952 | V952V | gtC | gtA | 1 | 3 | AY.99.2 | 0.000092 |
S | 952 | V952V | gtC | gtT | 3 | 3 | B.1.243 | 0.000209 |
S | 952 | V952V | gtC | gtT | 3 | 3 | B.1.438.1 | 0.000322 |
S | 952 | V952V | gtC | gtT | 3 | 3 | B.1.466.2 | 0.001174 |
S | 952 | V952V | gtC | gtT | 3 | 3 | B.1.526 | 0.000071 |
S | 952 | V952V | gtC | gtT | 3 | 3 | B.1.595 | 0.000783 |
S | 952 | V952V | gtC | gtT | 3 | 3 | B.1.596 | 0.000261 |
S | 952 | V952V | gtC | gtT | 3 | 3 | B.1.609 | 0.001438 |
S | 952 | V952del | GTC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
S | 952 | V952V | gtC | gtT | 3 | 3 | C.30 | 0.005181 |
S | 952 | V952I | Gtc | Atc | 3 | 3 | C.36.3 | 0.001702 |
S | 952 | V952V | gtC | gtT | 3 | 3 | C.37 | 0.000348 |
S | 952 | V952I | Gtc | Atc | 3 | 3 | P.1 | 0.000047 |
S | 952 | V952V | gtC | gtT | 3 | 3 | P.1.14 | 0.000143 |
S | 952 | V952A | gTc | gCc | 2 | 2 | 0.111111 | |
S | 952 | V952S | GTc | TCc | 1 | 2 | 0.055556 | |
S | 952 | V952L | Gtc | Ctc | 1 | 2 | 0.055556 | |
S | 952 | V952S | GTc | AGc | 1 | 2 | 0.055556 | |
S | 952 | V952L | GtC | CtT | 1 | 2 | 0.055556 | |
S | 952 | V952G | gTc | gGc | 2 | 2 | All | 0 |
S | 952 | V952S | GTc | TCc | 1 | 2 | All | 0 |
S | 952 | V952S | GTc | AGc | 1 | 2 | All | 0 |
S | 952 | V952I | Gtc | Atc | 2 | 2 | AY.102 | 0.000053 |
S | 952 | V952F | Gtc | Ttc | 2 | 2 | AY.103 | 0.000012 |
S | 952 | V952V | gtC | gtA | 1 | 2 | AY.121 | 0.000135 |
S | 952 | V952V | gtC | gtT | 1 | 2 | AY.121 | 0.000135 |
S | 952 | V952V | gtC | gtG | 1 | 2 | AY.13 | 0.000161 |
S | 952 | V952V | gtC | gtT | 1 | 2 | AY.13 | 0.000161 |
S | 952 | V952V | gtC | gtT | 2 | 2 | AY.23 | 0.000139 |
S | 952 | V952A | gTc | gCc | 2 | 2 | AY.25 | 0.000012 |
S | 952 | V952I | Gtc | Atc | 2 | 2 | AY.25 | 0.000012 |
S | 952 | V952F | Gtc | Ttc | 2 | 2 | AY.3 | 0.00002 |
S | 952 | V952F | Gtc | Ttc | 2 | 2 | AY.34 | 0.000194 |
S | 952 | V952F | Gtc | Ttc | 2 | 2 | AY.4.2 | 0.000043 |
S | 952 | V952A | gTc | gCc | 2 | 2 | AY.43 | 0.000009 |
S | 952 | V952del | GTC | --- | 2 | 2 | AY.43 | 0.000009 |
S | 952 | V952A | gTc | gCc | 2 | 2 | AY.44 | 0.000012 |
S | 952 | V952V | gtC | gtA | 1 | 2 | AY.45 | 0.000122 |
S | 952 | V952V | gtC | gtT | 1 | 2 | AY.45 | 0.000122 |
S | 952 | V952V | gtC | gtT | 2 | 2 | AY.46 | 0.000208 |
S | 952 | V952V | gtC | gtT | 2 | 2 | AY.46.6 | 0.000144 |
S | 952 | V952del | GTC | --- | 2 | 2 | AY.5 | 0.000041 |
S | 952 | V952V | gtC | gtT | 2 | 2 | AY.7.1 | 0.000225 |
S | 952 | V952V | gtC | gtT | 2 | 2 | AY.89 | 0.009804 |
S | 952 | V952F | Gtc | Ttc | 2 | 2 | B.1 | 0.000018 |
S | 952 | V952I | Gtc | Atc | 2 | 2 | B.1 | 0.000018 |
S | 952 | V952del | GTC | --- | 2 | 2 | B.1 | 0.000018 |
S | 952 | V952V | gtC | gtT | 2 | 2 | B.1.1.122 | 0.090909 |
S | 952 | V952V | gtC | gtT | 2 | 2 | B.1.1.219 | 0.01 |
S | 952 | V952V | gtC | gtT | 2 | 2 | B.1.1.312 | 0.003824 |
S | 952 | V952del | GTC | --- | 2 | 2 | B.1.1.312 | 0.003824 |
S | 952 | V952V | gtC | gtT | 2 | 2 | B.1.1.371 | 0.020833 |
S | 952 | V952V | gtC | gtT | 2 | 2 | B.1.1.434 | 0.000697 |
S | 952 | V952L | Gtc | Ctc | 2 | 2 | B.1.1.7 | 0.000002 |
S | 952 | V952V | gtC | gtT | 2 | 2 | B.1.1.70 | 0.000682 |
S | 952 | V952V | gtC | gtT | 2 | 2 | B.1.14 | 0.035088 |
S | 952 | V952V | gtC | gtT | 2 | 2 | B.1.160.30 | 0.005952 |
S | 952 | V952F | Gtc | Ttc | 2 | 2 | B.1.177.54 | 0.001213 |
S | 952 | V952del | GTC | --- | 2 | 2 | B.1.177.7 | 0.00033 |
S | 952 | V952V | gtC | gtT | 1 | 2 | B.1.351.2 | 0.000303 |
S | 952 | V952V | gtC | gtA | 1 | 2 | B.1.351.2 | 0.000303 |
S | 952 | V952V | gtC | gtT | 2 | 2 | B.1.36 | 0.000292 |
S | 952 | V952F | Gtc | Ttc | 2 | 2 | B.1.36.9 | 0.006431 |
S | 952 | V952I | Gtc | Atc | 2 | 2 | B.1.617.2 | 0.000008 |
S | 952 | V952V | gtC | gtT | 2 | 2 | C.36.3 | 0.001134 |
S | 952 | V952V | gtC | gtT | 2 | 2 | P.1.15 | 0.000465 |
S | 952 | V952V | gtC | gtT | 2 | 2 | P.1.16 | 0.000748 |
S | 952 | V952V | gtC | gtT | 2 | 2 | R.1 | 0.00018 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | 0.055556 | |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | 0.055556 | |
S | 952 | V952T | GTc | ACc | 1 | 1 | 0.055556 | |
S | 952 | V952G | gTc | gGc | 1 | 1 | 0.055556 | |
S | 952 | V952V | gtC | gtT | 1 | 1 | 0.055556 | |
S | 952 | V952D | gTc | gAc | 1 | 1 | 0.055556 | |
S | 952 | V952V | gtC | gtT | 1 | 1 | A | 0.000387 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | A | 0.000387 |
S | 952 | V952V | gtC | gtT | 1 | 1 | A.2.5 | 0.000499 |
S | 952 | V952V | gtC | gtT | 1 | 1 | A.2.5.3 | 0.010309 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AD.1 | 0.004115 |
S | 952 | V952H | GTc | CAc | 1 | 1 | All | 0 |
S | 952 | V952T | GTc | ACc | 1 | 1 | All | 0 |
S | 952 | V952V | gtC | gtA | 1 | 1 | AU.2 | 0.002421 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | AY.100 | 0.000046 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | AY.103 | 0.000006 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | AY.110 | 0.000113 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.111 | 0.000183 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.114 | 0.000231 |
S | 952 | V952A | gTc | gCc | 1 | 1 | AY.119 | 0.000035 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | AY.120 | 0.000037 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | AY.121 | 0.000135 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | AY.20 | 0.000039 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | AY.20 | 0.000039 |
S | 952 | V952A | gTc | gCc | 1 | 1 | AY.26 | 0.000028 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | AY.29 | 0.000016 |
S | 952 | V952L | GtC | TtA | 1 | 1 | AY.3 | 0.00001 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.32 | 0.000532 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.33 | 0.000067 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | AY.36 | 0.000148 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.39 | 0.000025 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | AY.39 | 0.000025 |
S | 952 | V952L | Gtc | Ctc | 1 | 1 | AY.4 | 0.000002 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.40 | 0.000964 |
S | 952 | V952V | gtC | gtA | 1 | 1 | AY.41 | 0.000294 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | AY.42 | 0.00004 |
S | 952 | V952del2 | GTc | --c | 1 | 1 | AY.43 | 0.000004 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | AY.43 | 0.000004 |
S | 952 | V952del1 | Gtc | -tc | 1 | 1 | AY.43 | 0.000004 |
S | 952 | V952N | GTc | AAc | 1 | 1 | AY.43 | 0.000004 |
S | 952 | V952D | gTC | gAT | 1 | 1 | AY.44 | 0.000006 |
S | 952 | V952del | GTC | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | AY.46.6 | 0.000072 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.5.4 | 0.000277 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.53 | 0.000288 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.59 | 0.00053 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.61 | 0.000105 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.75.1 | 0.00018 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.78 | 0.001541 |
S | 952 | V952V | gtC | gtA | 1 | 1 | AY.79 | 0.001211 |
S | 952 | V952del | GTC | --- | 1 | 1 | AY.81 | 0.001992 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | AY.84 | 0.000437 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | AY.85 | 0.000427 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.9 | 0.000068 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.9.1 | 0.000084 |
S | 952 | V952V | gtC | gtT | 1 | 1 | AY.98.1 | 0.000048 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B | 0.000128 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | B | 0.000128 |
S | 952 | V952L | Gtc | Ctc | 1 | 1 | B.1 | 0.000009 |
S | 952 | V952D | gTc | gAc | 1 | 1 | B.1.1 | 0.000018 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.1 | 0.000018 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.1.192 | 0.002309 |
S | 952 | V952L | GtC | TtA | 1 | 1 | B.1.1.216 | 0.00089 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.1.291 | 0.000742 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.1.303 | 0.002762 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | B.1.1.306 | 0.000438 |
S | 952 | V952V | gtC | gtA | 1 | 1 | B.1.1.33 | 0.000421 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | B.1.1.338 | 0.017241 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.1.372 | 0.000689 |
S | 952 | V952V | gtC | gtA | 1 | 1 | B.1.1.377 | 0.001381 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.1.388 | 0.045455 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.1.39 | 0.00051 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.1.423 | 0.0625 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | B.1.1.448 | 0.002033 |
S | 952 | V952D | gTc | gAc | 1 | 1 | B.1.1.519 | 0.00004 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.1.521 | 0.005348 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.1.523 | 0.001563 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | B.1.1.526 | 0.003546 |
S | 952 | V952del1 | gTc | g-c | 1 | 1 | B.1.1.7 | 0.000001 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.1.70 | 0.000341 |
S | 952 | V952A | gTc | gCc | 1 | 1 | B.1.1.70 | 0.000341 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.110.3 | 0.000718 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.119 | 0.010526 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | B.1.147 | 0.000756 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.161 | 0.017241 |
S | 952 | V952H | GTc | CAc | 1 | 1 | B.1.177 | 0.000013 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.177.16 | 0.000664 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.177.17 | 0.000821 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.177.19 | 0.001431 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | B.1.177.42 | 0.000894 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.177.44 | 0.000519 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.177.56 | 0.000668 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.177.58 | 0.001332 |
S | 952 | V952del2 | GTc | --c | 1 | 1 | B.1.177.6 | 0.000977 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.177.60 | 0.000218 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
S | 952 | V952D | gTc | gAc | 1 | 1 | B.1.177.69 | 0.001484 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.177.73 | 0.000566 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.177.75 | 0.001041 |
S | 952 | V952L | Gtc | Ctc | 1 | 1 | B.1.2 | 0.000009 |
S | 952 | V952A | gTc | gCc | 1 | 1 | B.1.2 | 0.000009 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.214.2 | 0.0006 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.23 | 0.006061 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.232 | 0.000537 |
S | 952 | V952L | Gtc | Ctc | 1 | 1 | B.1.234 | 0.000132 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | B.1.258 | 0.000067 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.258.11 | 0.000396 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.258.17 | 0.000104 |
S | 952 | V952V | gtC | gtA | 1 | 1 | B.1.301 | 0.005917 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.349 | 0.000715 |
S | 952 | V952D | gTc | gAc | 1 | 1 | B.1.36 | 0.000146 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.36.10 | 0.004785 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.36.16 | 0.001425 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.36.17 | 0.000494 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | B.1.36.36 | 0.000602 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.361 | 0.001289 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.367 | 0.000792 |
S | 952 | V952G | gTc | gGc | 1 | 1 | B.1.399 | 0.001934 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.420 | 0.010417 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.428 | 0.00102 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | B.1.429 | 0.000024 |
S | 952 | V952del1 | gTc | g-c | 1 | 1 | B.1.459 | 0.004082 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | B.1.462 | 0.007246 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.470 | 0.001404 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.547 | 0.02439 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.561 | 0.000397 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.574 | 0.002151 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | B.1.596.1 | 0.009346 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.597 | 0.00463 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.600 | 0.005848 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | B.1.604 | 0.017241 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.617.1 | 0.000129 |
S | 952 | V952del | GTC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
S | 952 | V952A | gTc | gCc | 1 | 1 | B.1.617.2 | 0.000004 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.620 | 0.000946 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | B.1.632 | 0.006711 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.637 | 0.000073 |
S | 952 | V952V | gtC | gtT | 1 | 1 | B.1.9.5 | 0.005682 |
S | 952 | V952A | gTc | gCc | 1 | 1 | C.1 | 0.002392 |
S | 952 | V952V | gtC | gtT | 1 | 1 | C.35 | 0.000774 |
S | 952 | V952V | gtC | gtA | 1 | 1 | D.2 | 0.000075 |
S | 952 | V952I | Gtc | Atc | 1 | 1 | D.2 | 0.000075 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | P.1 | 0.000016 |
S | 952 | V952V | gtC | gtT | 1 | 1 | P.1.1 | 0.000318 |
S | 952 | V952A | gTc | gCc | 1 | 1 | P.1.12 | 0.000484 |
S | 952 | V952F | Gtc | Ttc | 1 | 1 | P.1.12 | 0.000484 |
S | 952 | V952V | gtC | gtT | 1 | 1 | P.3 | 0.001595 |
S | 952 | V952V | gtC | gtT | 1 | 1 | Q.3 | 0.000145 |
S | 952 | V952del | GTC | --- | 1 | 1 | Q.8 | 0.000165 |
S | 952 | V952V | gtC | gtT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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