CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 950 & Codon = Aat

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S950D950NnonsynGatAat268192826817000.99991524410-24412

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S950D950NGatAat26817002681928All0.512907
S950D950NGatAat637641637692AY.40.992439
S950D950NGatAat258153258171B.1.617.20.972053
S950D950NGatAat208699208704AY.430.924633
S950D950NGatAat162355162389AY.250.976536
S950D950NGatAat160024160040AY.440.974028
S950D950NGatAat157415157417AY.1030.977399
S950D950NGatAat9830498304AY.30.97777
S950D950NGatAat6328563285AY.290.998233
S950D950NGatAat4752347529AY.50.981312
S950D950NGatAat4584545846AY.4.20.994318
S950D950NGatAat3897939002AY.390.963229
S950D950NGatAat3489634897AY.1020.925231
S950D950NGatAat3402134022AY.260.96314
S950D950NGatAat3115431154AY.470.96905
S950D950NGatAat2696926976AY.1190.952228
S950D950NGatAat2658626587AY.1200.988437
S950D950NGatAat2591425914AY.9.20.951811
S950D950NGatAat2498024980AY.39.10.989542
S950D950NGatAat2407924080AY.60.990335
S950D950NGatAat2381123812AY.200.925418
S950D950NGatAat2331723319AY.420.938046
S950D950NGatAat2052920533AY.1000.94447
S950D950NGatAat1957719577AY.98.10.948131
S950D950NGatAat1736017361AY.750.972549
S950D950NGatAat1543815438AY.1180.967172
S950D950NGatAat1531315313AY.270.991069
S950D950NGatAat1463214634AY.90.98905
S950D950NGatAat1404214042AY.330.937696
S950D950NGatAat1354013540AY.230.94441
S950D950NGatAat1244912449AY.980.983411
S950D950NGatAat1242412446AY.46.60.897104
S950D950NGatAat1140811408AY.9.10.955124
S950D950NGatAat1122611226AY.3.10.957115
S950D950NGatAat1116711167AY.140.982838
S950D950NGatAat1108111081AY.1170.936528
S950D950NGatAat1070910711B.1.6210.947951
S950D950NGatAat1015610156AY.540.968345
S950D950NGatAat98729872AY.340.957238
S950D950NGatAat92779277AY.99.20.854944
S950D950NGatAat91979198AY.4.50.988606
S950D950NGatAat87548754AY.1100.986477
S950D950NGatAat86608660AY.7.10.975995
S950D950NGatAat86478647AY.460.899979
S950D950NGatAat85708570AY.740.991095
S950D950NGatAat82568257AY.610.865046
S950D950NGatAat77787778AY.450.946459
S950D950NGatAat68196819AY.1130.970953
S950D950NGatAat66806680AY.4.2.10.995232
S950D950NGatAat63176317AY.1210.854804
S950D950NGatAat62896289AY.360.932118
S950D950NGatAat60776077AY.130.978268
S950D950NGatAat59865986AY.46.40.984701
S950D950NGatAat53775378AY.1110.984799
S950D950NGatAat50585058AY.70.991376
S950D950NGatAat50355036AY.46.50.999008
S950D950NGatAat48974897AY.75.10.882979
S950D950NGatAat46074607AY.700.960592
S950D950NGatAat45434543AY.690.848049
S950D950NGatAat45124515AY.29.10.994928
S950D950NGatAat41604161AY.1140.961405
S950D950NGatAat40214021AY.350.937078
S950D950NGatAat35773577AY.930.976789
S950D950NGatAat34033403AY.680.931563
S950D950NGatAat33243324AY.530.955722
S950D950NGatAat32903290AY.920.945131
S950D950NGatAat32683268AY.1160.937195
S950D950NGatAat31633163AY.116.10.985051
S950D950NGatAat31163116AY.410.915932
S950D950NGatAat31113111AY.5.40.860819
S950D950NGatAat30753075AY.120.10.987159
S950D950NGatAat30593059AY.370.966814
S950D950NGatAat29662966AY.120.937421
S950D950NGatAat27992799AY.5.30.944332
S950D950NGatAat27622762AY.20.983618
S950D950NGatAat26652665AY.1060.892498
S950D950NGatAat25572557AY.630.989168
S950D950NGatAat24902490AY.300.985358
S950D950NGatAat23962396AY.23.11
S950D950NGatAat23572357AY.10.932727
S950D950NGatAat23002300AY.160.873197
S950D950NGatAat22812281AY.4.40.933306
S950D950NGatAat22722272AY.850.970525
S950D950NGatAat22132213AY.620.96427
S950D950NGatAat22122212AY.240.953448
S950D950NGatAat22022202AY.940.974768
S950D950NGatAat21052105AY.670.977252
S950D950NGatAat20862086AY.480.970233
S950D950NGatAat20772077AY.1070.967847
S950D950NGatAat20402040AY.840.892388
S950D950NGatAat19141914AY.120.2.10.953662
S950D950NGatAat19141914B.1.621.10.968134
S950D950NGatAat18861887AY.16.10.886278
S950D950NGatAat18721872B.10.017147
S950D950NGatAat18361836AY.1010.900441
S950D950NGatAat18321832AY.710.870309
S950D950NGatAat18291829AY.100.969263
S950D950NGatAat17871799AY.590.946504
S950D950NGatAat17221722AY.650.91791
S950D950NGatAat16951695AY.7.20.947987
S950D950NGatAat16451645AY.80.99697
S950D950NGatAat16211621AY.640.964881
S950D950NGatAat15621562AY.320.831736
S950D950NGatAat15541554AY.380.775836
S950D950NGatAat15111512AY.46.20.959975
S950D950NGatAat15041504AY.570.986877
S950D950NGatAat14731473AY.1050.947267
S950D950NGatAat14571457AY.730.969395
S950D950NGatAat14541454AY.900.995209
S950D950NGatAat13791379AY.39.1.10.999275
S950D950NGatAat13531353AY.4.10.997788
S950D950NGatAat13141314AY.1090.971893
S950D950NGatAat12661266AY.910.924763
S950D950NGatAat12351235AY.500.98721
S950D950NGatAat11821182AY.520.962541
S950D950NGatAat11781178AY.870.980849
S950D950NGatAat11661166AY.950.887367
S950D950NGatAat11211121AY.860.93029
S950D950NGatAat10711071AY.880.94695
S950D950NGatAat10601060AY.4.30.892256
S950D950NGatAat10201020AY.600.956848
S950D950NGatAat10091009AY.510.917273
S950D950NGatAat997997AY.580.904719
S950D950NGatAat985985AY.400.949855
S950D950NGatAat955955AY.46.10.980493
S950D950NGatAat902902AY.660.964706
S950D950NGatAat895895AY.34.10.4564
S950D950NGatAat879879AY.800.992099
S950D950NGatAat840840AY.990.881427
S950D950NGatAat839839AY.770.945885
S950D950NGatAat816816AY.190.930445
S950D950NGatAat812812AY.790.983051
S950D950NGatAat806806AY.46.30.752568
S950D950NGatAat741741AY.120.20.952442
S950D950NGatAat735735AY.110.983936
S950D950NGatAat722722AY.820.979647
S950D950NGatAat699700AY.1080.770673
S950D950NGatAat690690AY.720.938776
S950D950NGatAat648648AY.39.20.998459
S950D950NGatAat620620AY.99.10.962733
S950D950NGatAat590590AY.560.94703
S950D950NGatAat589589AY.780.90755
S950D950NGatAat576576AY.830.993103
S950D950NGatAat545545AY.970.926871
S950D950NGatAat532532AY.550.488073
S950D950NGatAat506506AY.9.2.11
S950D950NGatAat491491AY.210.931689
S950D950NGatAat488488AY.810.972112
S950D950NGatAat483483AY.1040.958333
S950D950NGatAat480480AY.280.907372
S950D950NGatAat470470AY.220.983264
S950D950NGatAat441441AY.150.98
S950D950NGatAat397397AY.5.20.977833
S950D950NGatAat396396B.1.6250.931765
S950D950NGatAat299299AY.490.955272
S950D950NGatAat281281B.1.617.30.838806
S950D950NGatAat263263AY.5.10.988722
S950D950NGatAat238238AY.91.10.96748
S950D950NGatAat198198AY.760.956522
S950D950NGatAat196196AY.890.960784
S950D950NGatAat186186B.1.6300.973822
S950D950NGatAat178178B0.022751
S950D950NGatAat134134AY.960.278008
S950D950NGatAat122122AY.171
S950D950NGatAat9797B.1.1.70.000087
S950D950NGatAat9595AY.1150.494792
S950D950NGatAat9595AY.180.959596
S950D950NGatAat7777B.1.10.001397
S950D950NGatAat6161B.1.243.20.884058
S950D950NGatAat4949AY.310.907407
S950D950NGatAat4343B.1.5960.003747
S950D950NGatAat4242B.1.617.10.005417
S950D950NGatAat4242B.1.6230.022532
S950D950NGatAat3737P.50.506849
S950D950NGatAat2929C.370.003366
S950D950NGatAat2525B.1.20.00022
S950D950NGatAat2525P.1.120.012101
S950D950NGatAat2222B.1.2140.080586
S950D950NGatAat2020B.1.6190.017422
S950D950NGatAat1717P.10.000268
S950D950NGatAat1313B.1.3510.000386
S950D950NGatAat1212B.1.1.3290.046154
S950D950NGatAat1111B.1.1.5260.039007
S950D950NGatAat7100.388889
S950D950NGatAat1010B.1.1770.000132
S950D950NGatAat99C.37.10.02356
S950D950NGatAat88B.1.6280.002819
S950D950NGatAat77B.1.177.730.003964
S950D950NGatAat77B.1.2430.000487
S950D950NGatAat77B.1.4620.050725
S950D950NGatAat55B.1.1.2940.006329
S950D950NGatAat55B.1.1.3170.002058
S950D950NGatAat55B.1.177.210.000382
S950D950NGatAat44A0.001548
S950D950NGatAat44B.1.1.280.001245
S950D950NGatAat44B.1.1.3060.001754
S950D950NGatAat44B.1.1.530.054795
S950D950NGatAat44B.1.1280.002541
S950D950NGatAat44B.1.3690.001141
S950D950NGatAat44B.1.5260.000094
S950D950NGatAat44B.1.5330.038462
S950D950NGatAat33B.1.1.2160.002671
S950D950NGatAat33B.1.1.5230.004687
S950D950NGatAat33B.1.1600.000094
S950D950NGatAat23B.1.2210.000142
S950D950NGatAat33B.1.360.000438
S950D950NGatAat33B.1.3750.002459
S950D950NGatAat33B.1.466.20.001174
S950D950NGatAat33B.1.4740.005703
S950D950NGatAat33B.1.5760.00272
S950D950NGatAat33P.1.170.000485
S950D950NGatAat33P.1.70.000958
S950D950NGatAat22B.1.1.2050.007435
S950D950NGatAat22B.1.1.50.016667
S950D950NGatAat22B.1.1.5070.017391
S950D950NGatAat22B.1.1430.042553
S950D950NGatAat22B.1.1570.00597
S950D950NGatAat22B.1.1700.008621
S950D950NGatAat22B.1.214.20.001199
S950D950NGatAat22B.1.2400.000431
S950D950NGatAat22B.1.3240.00321
S950D950NGatAat22B.1.3350.020619
S950D950NGatAat22B.1.36.170.000988
S950D950NGatAat22B.1.4320.022472
S950D950NGatAat22B.1.4330.00639
S950D950NGatAat22B.1.4590.008163
S950D950NGatAat22B.1.4850.029851
S950D950NGatAat22B.1.6290.026667
S950D950NGatAat22B.1.6370.000146
S950D950NGatAat22B.550.0059
S950D950NGatAat22P.1.10.000635
S950D950NGatAat22P.1.10.10.01626
S950D950NGatAat22P.1.130.001797
S950D950NGatAat22P.1.150.000465
S950D950NGatAat22Q.10.000253
S950D950NGatAat22Q.80.00033
S950D950NGatAat22R.10.00018
S950D950NGatAat11A.20.000662
S950D950NGatAat11AU.30.00211
S950D950NGatAat11B.1.1.1210.002427
S950D950NGatAat11B.1.1.1480.008772
S950D950NGatAat11B.1.1.2310.003096
S950D950NGatAat11B.1.1.2540.011236
S950D950NGatAat11B.1.1.3260.001761
S950D950NGatAat11B.1.1.3480.000796
S950D950NGatAat11B.1.1.3560.008547
S950D950NGatAat11B.1.1.3720.000689
S950D950NGatAat11B.1.1.3850.004464
S950D950NGatAat11B.1.1.4320.001266
S950D950NGatAat11B.1.1.5120.028571
S950D950NGatAat11B.1.1.5190.00004
S950D950NGatAat11B.1.1.990.02381
S950D950NGatAat11B.1.1310.008772
S950D950NGatAat11B.1.1420.002899
S950D950NGatAat11B.1.1640.014925
S950D950NGatAat11B.1.177.860.000183
S950D950NGatAat11B.1.2060.000816
S950D950NGatAat11B.1.2180.005155
S950D950NGatAat11B.1.2340.000132
S950D950NGatAat11B.1.2410.000812
S950D950NGatAat11B.1.2470.014925
S950D950NGatAat11B.1.2580.000067
S950D950NGatAat11B.1.2800.007143
S950D950NGatAat11B.1.3010.005917
S950D950NGatAat11B.1.3110.000275
S950D950NGatAat11B.1.3230.020833
S950D950NGatAat11B.1.3250.006897
S950D950NGatAat11B.1.3400.004292
S950D950NGatAat11B.1.3490.000715
S950D950NGatAat11B.1.3550.011111
S950D950NGatAat11B.1.3620.001541
S950D950NGatAat11B.1.3710.001122
S950D950NGatAat11B.1.3990.001934
S950D950NGatAat11B.1.4090.000781
S950D950NGatAat11B.1.4270.00005
S950D950NGatAat11B.1.4290.000024
S950D950NGatAat11B.1.4690.00361
S950D950NGatAat11B.1.4760.1
S950D950NGatAat11B.1.4970.000315
S950D950NGatAat11B.1.5300.007143
S950D950NGatAat11B.1.5460.003704
S950D950NGatAat11B.1.5510.00129
S950D950NGatAat11B.1.5540.004405
S950D950NGatAat11B.1.5710.009709
S950D950NGatAat11B.1.5730.006098
S950D950NGatAat11B.1.5950.000261
S950D950NGatAat11B.1.595.10.005848
S950D950NGatAat11B.1.5990.00365
S950D950NGatAat11B.1.6040.017241
S950D950NGatAat11B.1.6090.000479
S950D950NGatAat11B.1.6200.000946
S950D950NGatAat11B.1.6320.006711
S950D950NGatAat11B.1.6330.041667
S950D950NGatAat11B.1.6360.006711
S950D950NGatAat11B.1.6380.052632
S950D950NGatAat11B.1.700.02439
S950D950NGatAat11B.1.810.021277
S950D950NGatAat11B.130.045455
S950D950NGatAat11C.160.00106
S950D950NGatAat11C.36.3.10.002717
S950D950NGatAat11P.1.140.000048
S950D950NGatAat11P.20.000187
S950D950NGatAat11P.70.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.