CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 949

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S949Q949QsyncaAcaG114114124407-24409
S949Q949deldelCAA---8181124407-24409
S949Q949RnonsyncAacGa6565124407-24409
S949Q949EnonsynCaaGaa3333124407-24409
S949Q949XnonsynCaaTaa1818124407-24409
S949Q949KnonsynCaaAaa1818124407-24409
S949Q949LnonsyncAacTa1111124407-24409
S949Q949HnonsyncaAcaT750.71428624407-24409
S949Q949HnonsyncaAcaC720.28571424407-24409
S949Q949del1delCaa-aa420.524407-24409
S949Q949del1delcaAca-420.524407-24409
S949Q949del2delCAa--a320.66666724407-24409
S949Q949del2delcAAc--310.33333324407-24409
S949Q949PnonsyncAacCa22124407-24409
S949Q949YnonsynCaATaC11124407-24409
S949Q949SnonsynCAaTCa11124407-24409

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S949Q949QcaAcaG114114All0.000022
S949Q949delCAA---8181All0.000015
S949Q949RcAacGa6565All0.000012
S949Q949QcaAcaG5252B.1.1.70.000047
S949Q949RcAacGa4141B.1.6161
S949Q949delCAA---3434B.1.1.70.00003
S949Q949ECaaGaa3333All0.000006
S949Q949ECaaGaa2121AY.40.000033
S949Q949KCaaAaa1818All0.000003
S949Q949XCaaTaa1818All0.000003
S949Q949LcAacTa1111All0.000002
S949Q949RcAacGa1010B.1.1.70.000009
S949Q949delCAA---1010B.1.1770.000132
S949Q949QcaAcaG99B.1.360.001313
S949Q949HcaAcaT57All0.000001
S949Q949HcaAcaC27All0
S949Q949QcaAcaG77B.1.1.2790.007848
S949Q949XCaaTaa55B.1.1.70.000004
S949Q949ECaaGaa55B.1.5260.000118
S949Q949del1Caa-aa24All0
S949Q949del1caAca-24All0
S949Q949delCAA---44AY.40.000006
S949Q949QcaAcaG44AY.40.000006
S949Q949del2CAa--a23All0
S949Q949del2cAAc--13All0
S949Q949LcAacTa33AY.240.001293
S949Q949delCAA---33AY.430.000013
S949Q949KCaaAaa33AY.430.000013
S949Q949QcaAcaG33AY.740.000347
S949Q949XCaaTaa33B.10.000027
S949Q949KCaaAaa33B.10.000027
S949Q949QcaAcaG33B.1.10.000054
S949Q949HcaAcaT33B.1.1.70.000003
S949Q949del2CAa--a23B.1.1.70.000002
S949Q949del2cAAc--13B.1.1.70.000001
S949Q949QcaAcaG33B.1.20.000026
S949Q949QcaAcaG33B.1.5250.000339
S949Q949delCAA---33B.1.617.20.000011
S949Q949QcaAcaG33P.10.000047
S949Q949PcAacCa220.111111
S949Q949XCaaTaa220.111111
S949Q949PcAacCa22All0
S949Q949QcaAcaG22AY.1020.000053
S949Q949QcaAcaG22AY.260.000057
S949Q949KCaaAaa22AY.30.00002
S949Q949LcAacTa22AY.440.000012
S949Q949delCAA---22B.10.000018
S949Q949QcaAcaG22B.1.1.2140.000111
S949Q949delCAA---22B.1.1.3120.003824
S949Q949LcAacTa22B.1.1.70.000002
S949Q949QcaAcaG22B.1.1770.000026
S949Q949XCaaTaa22B.1.1770.000026
S949Q949delCAA---22B.1.177.70.00033
S949Q949RcAacGa22B.1.20.000018
S949Q949QcaAcaG22B.1.4270.000101
S949Q949RcAacGa22B.1.617.20.000008
S949Q949QcaAcaG22B.1.6210.000177
S949Q949XCaaTaa22D.20.00015
S949Q949HcaAcaC110.055556
S949Q949KCaaAaa110.055556
S949Q949YCaATaC110.055556
S949Q949SCAaTCa110.055556
S949Q949delCAA---11A0.000387
S949Q949QcaAcaG11A.270.001656
S949Q949YCaATaC11All0
S949Q949SCAaTCa11All0
S949Q949QcaAcaG11AY.1000.000046
S949Q949RcAacGa11AY.1020.000027
S949Q949RcAacGa11AY.1030.000006
S949Q949QcaAcaG11AY.1070.000466
S949Q949LcAacTa11AY.1170.000085
S949Q949ECaaGaa11AY.200.000039
S949Q949ECaaGaa11AY.250.000006
S949Q949del1caAca-11AY.290.000016
S949Q949XCaaTaa11AY.39.10.00004
S949Q949HcaAcaC11AY.40.000002
S949Q949KCaaAaa11AY.40.000002
S949Q949RcAacGa11AY.40.000002
S949Q949LcAacTa11AY.40.000002
S949Q949KCaaAaa11AY.420.00004
S949Q949RcAacGa11AY.430.000004
S949Q949del1caAca-11AY.440.000006
S949Q949KCaaAaa11AY.440.000006
S949Q949delCAA---11AY.46.20.000635
S949Q949delCAA---11AY.50.000021
S949Q949KCaaAaa11AY.620.000436
S949Q949delCAA---11AY.810.001992
S949Q949ECaaGaa11AY.840.000437
S949Q949delCAA---11AY.90.000068
S949Q949KCaaAaa11B0.000128
S949Q949RcAacGa11B.10.000009
S949Q949KCaaAaa11B.1.10.000018
S949Q949delCAA---11B.1.10.000018
S949Q949delCAA---11B.1.1.1590.004673
S949Q949QcaAcaG11B.1.1.1890.001513
S949Q949ECaaGaa11B.1.1.2160.00089
S949Q949delCAA---11B.1.1.2360.006897
S949Q949KCaaAaa11B.1.1.3260.001761
S949Q949KCaaAaa11B.1.1.5190.00004
S949Q949del1Caa-aa11B.1.1.70.000001
S949Q949delCAA---11B.1.1.700.000341
S949Q949QcaAcaG11B.1.1.700.000341
S949Q949RcAacGa11B.1.1390.000733
S949Q949QcaAcaG11B.1.1470.000756
S949Q949RcAacGa11B.1.1770.000013
S949Q949LcAacTa11B.1.1770.000013
S949Q949delCAA---11B.1.177.150.000631
S949Q949delCAA---11B.1.177.170.000821
S949Q949delCAA---11B.1.177.210.000076
S949Q949delCAA---11B.1.177.540.000606
S949Q949delCAA---11B.1.177.580.001332
S949Q949delCAA---11B.1.177.60.000977
S949Q949delCAA---11B.1.177.630.002703
S949Q949delCAA---11B.1.177.90.001332
S949Q949RcAacGa11B.1.1990.004132
S949Q949ECaaGaa11B.1.20.000009
S949Q949KCaaAaa11B.1.20.000009
S949Q949XCaaTaa11B.1.20.000009
S949Q949QcaAcaG11B.1.2210.000071
S949Q949del1Caa-aa11B.1.2220.001692
S949Q949delCAA---11B.1.230.006061
S949Q949XCaaTaa11B.1.3510.00003
S949Q949QcaAcaG11B.1.3510.00003
S949Q949RcAacGa11B.1.3510.00003
S949Q949delCAA---11B.1.36.170.000494
S949Q949QcaAcaG11B.1.4290.000024
S949Q949QcaAcaG11B.1.5260.000024
S949Q949QcaAcaG11B.1.5600.00463
S949Q949ECaaGaa11B.1.5950.000261
S949Q949XCaaTaa11B.1.6090.000479
S949Q949HcaAcaT11B.1.617.10.000129
S949Q949delCAA---11B.1.617.10.000129
S949Q949QcaAcaG11B.1.617.20.000004
S949Q949ECaaGaa11B.1.617.20.000004
S949Q949QcaAcaG11B.400.000364
S949Q949HcaAcaT11B.400.000364
S949Q949QcaAcaG11B.60.00091
S949Q949QcaAcaG11C.1.20.004255
S949Q949RcAacGa11P.10.000016
S949Q949LcAacTa11P.1.140.000048
S949Q949delCAA---11Q.80.000165