CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 940 | S940S | syn | tcC | tcT | 14292 | 13449 | 0.941016 | 24380-24382 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 940 | S940S | tcC | tcT | 13449 | 14292 | All | 0.002572 |
S | 940 | S940S | tcC | tcT | 3190 | 3190 | B.1.1.318 | 0.962583 |
S | 940 | S940S | tcC | tcT | 1372 | 1530 | B.1.1.7 | 0.001228 |
S | 940 | S940S | tcC | tcT | 1201 | 1201 | AZ.2 | 0.986043 |
S | 940 | S940S | tcC | tcT | 1150 | 1150 | AZ.1 | 0.997398 |
S | 940 | S940S | tcC | tcT | 114 | 652 | AY.3 | 0.001134 |
S | 940 | S940S | tcC | tcT | 644 | 644 | AZ.3 | 0.978723 |
S | 940 | S940S | tcC | tcT | 552 | 573 | AY.4 | 0.000859 |
S | 940 | S940S | tcC | tcT | 452 | 454 | B.1.177.7 | 0.074514 |
S | 940 | S940S | tcC | tcT | 284 | 284 | AZ.5 | 0.996491 |
S | 940 | S940S | tcC | tcT | 280 | 280 | P.6 | 0.880503 |
S | 940 | S940S | tcC | tcT | 270 | 271 | AY.103 | 0.001676 |
S | 940 | S940S | tcC | tcT | 222 | 232 | B.1.617.2 | 0.000836 |
S | 940 | S940S | tcC | tcT | 215 | 215 | B.1.1.63 | 0.082948 |
S | 940 | S940S | tcC | tcT | 193 | 203 | B.1.2 | 0.001699 |
S | 940 | S940S | tcC | tcT | 176 | 176 | B.1.637 | 0.012861 |
S | 940 | S940S | tcC | tcT | 159 | 159 | B.1.177 | 0.002094 |
S | 940 | S940S | tcC | tcT | 150 | 153 | AY.25 | 0.000902 |
S | 940 | S940S | tcC | tcT | 128 | 139 | B.1 | 0.001172 |
S | 940 | S940S | tcC | tcT | 123 | 123 | AZ.2.1 | 1 |
S | 940 | S940S | tcC | tcT | 119 | 119 | AZ.6 | 1 |
S | 940 | S940S | tcC | tcT | 102 | 104 | B.1.1 | 0.00185 |
S | 940 | S940S | tcC | tcT | 90 | 91 | B.1.427 | 0.004545 |
S | 940 | S940S | tcC | tcT | 73 | 83 | AY.43 | 0.000323 |
S | 940 | S940S | tcC | tcT | 80 | 81 | AY.44 | 0.000487 |
S | 940 | S940S | tcC | tcT | 66 | 71 | P.1 | 0.00104 |
S | 940 | S940S | tcC | tcT | 61 | 63 | AY.119 | 0.002154 |
S | 940 | S940S | tcC | tcT | 61 | 61 | B.1.240 | 0.013149 |
S | 940 | S940S | tcC | tcT | 53 | 57 | AY.102 | 0.001405 |
S | 940 | S940S | tcC | tcT | 57 | 57 | B.1.1.432 | 0.072152 |
S | 940 | S940S | tcC | tcT | 56 | 56 | AY.75 | 0.003137 |
S | 940 | S940S | tcC | tcT | 55 | 56 | B.1.160 | 0.001715 |
S | 940 | S940S | tcC | tcT | 53 | 55 | AY.39 | 0.00131 |
S | 940 | S940S | tcC | tcT | 55 | 55 | B.1.243 | 0.003827 |
S | 940 | S940S | tcC | tcT | 53 | 54 | B.1.429 | 0.001247 |
S | 940 | S940S | tcC | tcT | 54 | 54 | B.1.596 | 0.004705 |
S | 940 | S940S | tcC | tcT | 52 | 52 | AY.29 | 0.00082 |
S | 940 | S940S | tcC | tcT | 52 | 52 | AY.39.1 | 0.00206 |
S | 940 | S940S | tcC | tcT | 52 | 52 | AY.47 | 0.001617 |
S | 940 | S940S | tcC | tcT | 40 | 42 | AY.26 | 0.001132 |
S | 940 | S940S | tcC | tcT | 42 | 42 | AY.42 | 0.00169 |
S | 940 | S940S | tcC | tcT | 37 | 37 | AY.4.2 | 0.000802 |
S | 940 | S940S | tcC | tcT | 36 | 36 | B.1.526 | 0.000846 |
S | 940 | S940S | tcC | tcT | 29 | 29 | B.1.371 | 0.032548 |
S | 940 | S940S | tcC | tcT | 27 | 27 | B.1.1.519 | 0.001072 |
S | 940 | S940S | tcC | tcT | 26 | 26 | AY.20 | 0.00101 |
S | 940 | S940S | tcC | tcT | 25 | 25 | AY.99.2 | 0.002304 |
S | 940 | S940S | tcC | tcT | 24 | 25 | B.1.221 | 0.001705 |
S | 940 | S940S | tcC | tcT | 24 | 24 | AY.100 | 0.001104 |
S | 940 | S940S | tcC | tcT | 23 | 24 | AY.33 | 0.001536 |
S | 940 | S940S | tcC | tcT | 22 | 24 | B.1.351 | 0.000654 |
S | 940 | S940S | tcC | tcT | 23 | 23 | AY.9.2 | 0.000845 |
S | 940 | S940S | tcC | tcT | 23 | 23 | B.1.621 | 0.002036 |
S | 940 | S940S | tcC | tcT | 21 | 21 | B.1.311 | 0.005766 |
S | 940 | S940S | tcC | tcT | 20 | 20 | AY.9 | 0.001352 |
S | 940 | S940S | tcC | tcT | 20 | 20 | B.1.177.57 | 0.00562 |
S | 940 | S940S | tcC | tcT | 19 | 19 | B.1.1.37 | 0.003664 |
S | 940 | S940S | tcC | tcT | 19 | 19 | B.1.617.1 | 0.00245 |
S | 940 | S940S | tcC | tcT | 18 | 18 | B.1.128 | 0.011436 |
S | 940 | S940S | tcC | tcT | 14 | 17 | C.37 | 0.001625 |
S | 940 | S940S | tcC | tcT | 16 | 16 | AY.109 | 0.011834 |
S | 940 | S940S | tcC | tcT | 16 | 16 | B.1.36 | 0.002334 |
S | 940 | S940S | tcC | tcT | 16 | 16 | D.2 | 0.001201 |
S | 940 | S940S | tcC | tcT | 16 | 16 | K.1 | 0.380952 |
S | 940 | S940S | tcC | tcT | 15 | 15 | AY.120 | 0.000558 |
S | 940 | S940S | tcC | tcT | 7 | 15 | AY.5 | 0.000145 |
S | 940 | S940S | tcC | tcT | 15 | 15 | B.1.1.214 | 0.000832 |
S | 940 | S940S | tcC | tcT | 15 | 15 | B.1.1.222 | 0.00306 |
S | 940 | S940S | tcC | tcT | 15 | 15 | B.1.36.17 | 0.007411 |
S | 940 | S940S | tcC | tcT | 10 | 14 | AY.61 | 0.001048 |
S | 940 | S940S | tcC | tcT | 12 | 14 | B.1.234 | 0.001583 |
S | 940 | S940S | tcC | tcT | 12 | 13 | AY.46 | 0.001249 |
S | 940 | S940S | tcC | tcT | 13 | 13 | AY.5.3 | 0.004386 |
S | 940 | S940S | tcC | tcT | 13 | 13 | B.1.346 | 0.017038 |
S | 940 | S940S | tcC | tcT | 13 | 13 | B.1.612 | 0.034483 |
S | 940 | S940S | tcC | tcT | 12 | 12 | AY.4.3 | 0.010101 |
S | 940 | S940S | tcC | tcT | 12 | 12 | B.1.139 | 0.008798 |
S | 940 | S940S | tcC | tcT | 12 | 12 | B.1.351.2 | 0.003631 |
S | 940 | S940S | tcC | tcT | 12 | 12 | P.1.17 | 0.001941 |
S | 940 | S940S | tcC | tcT | 10 | 11 | B | 0.001278 |
S | 940 | S940S | tcC | tcT | 11 | 11 | B.1.1.317 | 0.004529 |
S | 940 | S940S | tcC | tcT | 10 | 10 | AY.36 | 0.001482 |
S | 940 | S940S | tcC | tcT | 9 | 9 | AY.107 | 0.004194 |
S | 940 | S940S | tcC | tcT | 9 | 9 | B.1.1.187 | 0.079646 |
S | 940 | S940S | tcC | tcT | 9 | 9 | B.1.1.277 | 0.006829 |
S | 940 | S940S | tcC | tcT | 9 | 9 | B.1.385 | 0.095745 |
S | 940 | S940S | tcC | tcT | 8 | 8 | AY.121 | 0.001083 |
S | 940 | S940S | tcC | tcT | 8 | 8 | AY.23 | 0.000558 |
S | 940 | S940S | tcC | tcT | 8 | 8 | AY.45 | 0.000973 |
S | 940 | S940S | tcC | tcT | 8 | 8 | AY.6 | 0.000329 |
S | 940 | S940S | tcC | tcT | 8 | 8 | B.1.1.153 | 0.008762 |
S | 940 | S940S | tcC | tcT | 3 | 7 | AY.75.1 | 0.000541 |
S | 940 | S940S | tcC | tcT | 7 | 7 | AY.9.1 | 0.000586 |
S | 940 | S940S | tcC | tcT | 6 | 7 | B.1.1.28 | 0.001867 |
S | 940 | S940S | tcC | tcT | 7 | 7 | B.1.258 | 0.000466 |
S | 940 | S940S | tcC | tcT | 7 | 7 | P.1.14 | 0.000335 |
S | 940 | S940S | tcC | tcT | 5 | 6 | AY.113 | 0.000712 |
S | 940 | S940S | tcC | tcT | 6 | 6 | AY.35 | 0.001398 |
S | 940 | S940S | tcC | tcT | 6 | 6 | AY.4.5 | 0.000645 |
S | 940 | S940S | tcC | tcT | 6 | 6 | AY.41 | 0.001764 |
S | 940 | S940S | tcC | tcT | 6 | 6 | AY.71 | 0.00285 |
S | 940 | S940S | tcC | tcT | 6 | 6 | B.1.1.1 | 0.00196 |
S | 940 | S940S | tcC | tcT | 6 | 6 | B.1.1.216 | 0.005343 |
S | 940 | S940S | tcC | tcT | 6 | 6 | B.1.1.269 | 0.008119 |
S | 940 | S940S | tcC | tcT | 6 | 6 | B.1.1.33 | 0.002525 |
S | 940 | S940S | tcC | tcT | 6 | 6 | B.1.1.39 | 0.003058 |
S | 940 | S940S | tcC | tcT | 6 | 6 | B.1.126 | 0.007653 |
S | 940 | S940S | tcC | tcT | 6 | 6 | B.1.177.21 | 0.000459 |
S | 940 | S940S | tcC | tcT | 6 | 6 | B.1.575 | 0.00182 |
S | 940 | S940S | tcC | tcT | 5 | 6 | B.1.576 | 0.004533 |
S | 940 | S940S | tcC | tcT | 4 | 5 | AY.117 | 0.000338 |
S | 940 | S940S | tcC | tcT | 4 | 5 | AY.34 | 0.000388 |
S | 940 | S940S | tcC | tcT | 5 | 5 | AY.91 | 0.003652 |
S | 940 | S940S | tcC | tcT | 5 | 5 | B.1.1.141 | 0.01006 |
S | 940 | S940S | tcC | tcT | 5 | 5 | B.1.1.306 | 0.002192 |
S | 940 | S940S | tcC | tcT | 5 | 5 | B.1.177.44 | 0.002595 |
S | 940 | S940S | tcC | tcT | 3 | 5 | B.1.609 | 0.001438 |
S | 940 | S940S | tcC | tcT | 5 | 5 | Q.8 | 0.000825 |
S | 940 | S940S | tcC | tcT | 2 | 4 | AY.16.1 | 0.00094 |
S | 940 | S940S | tcC | tcT | 4 | 4 | AY.51 | 0.003636 |
S | 940 | S940S | tcC | tcT | 4 | 4 | AY.54 | 0.000381 |
S | 940 | S940S | tcC | tcT | 4 | 4 | AY.84 | 0.00175 |
S | 940 | S940S | tcC | tcT | 4 | 4 | AY.98 | 0.000316 |
S | 940 | S940S | tcC | tcT | 4 | 4 | B.1.367 | 0.00317 |
S | 940 | S940S | tcC | tcT | 4 | 4 | P.1.15 | 0.000929 |
S | 940 | S940S | tcC | tcT | 3 | 4 | R.1 | 0.00027 |
S | 940 | S940S | tcC | tcT | 3 | 3 | A.1 | 0.000846 |
S | 940 | S940S | tcC | tcT | 2 | 3 | AY.118 | 0.000125 |
S | 940 | S940S | tcC | tcT | 3 | 3 | AY.3.1 | 0.000256 |
S | 940 | S940S | tcC | tcT | 3 | 3 | AY.37 | 0.000948 |
S | 940 | S940S | tcC | tcT | 3 | 3 | AY.5.4 | 0.00083 |
S | 940 | S940S | tcC | tcT | 3 | 3 | AY.55 | 0.002752 |
S | 940 | S940S | tcC | tcT | 3 | 3 | AY.62 | 0.001307 |
S | 940 | S940S | tcC | tcT | 3 | 3 | AY.92 | 0.000862 |
S | 940 | S940S | tcC | tcT | 1 | 3 | AY.95 | 0.000761 |
S | 940 | S940S | tcC | tcT | 3 | 3 | AY.98.1 | 0.000145 |
S | 940 | S940S | tcC | tcT | 3 | 3 | B.1.1.305 | 0.011583 |
S | 940 | S940S | tcC | tcT | 3 | 3 | B.1.177.35 | 0.002073 |
S | 940 | S940S | tcC | tcT | 3 | 3 | B.1.177.81 | 0.000568 |
S | 940 | S940S | tcC | tcT | 3 | 3 | B.1.258.14 | 0.002941 |
S | 940 | S940S | tcC | tcT | 3 | 3 | B.1.258.21 | 0.023256 |
S | 940 | S940S | tcC | tcT | 3 | 3 | B.1.284 | 0.039474 |
S | 940 | S940S | tcC | tcT | 3 | 3 | B.1.349 | 0.002144 |
S | 940 | S940S | tcC | tcT | 3 | 3 | B.1.36.29 | 0.001552 |
S | 940 | S940S | tcC | tcT | 3 | 3 | B.1.466.2 | 0.001174 |
S | 940 | S940S | tcC | tcT | 2 | 3 | B.1.525 | 0.000226 |
S | 940 | S940S | tcC | tcT | 3 | 3 | B.6.6 | 0.002667 |
S | 940 | S940S | tcC | tcT | 3 | 3 | Q.1 | 0.000379 |
S | 940 | S940S | tcC | tcT | 2 | 2 | 0.111111 | |
S | 940 | S940S | tcC | tcT | 2 | 2 | A.2.2 | 0.003378 |
S | 940 | S940S | tcC | tcT | 2 | 2 | AT.1 | 0.010256 |
S | 940 | S940S | tcC | tcT | 2 | 2 | AY.111 | 0.000366 |
S | 940 | S940S | tcC | tcT | 2 | 2 | AY.120.2.1 | 0.000997 |
S | 940 | S940S | tcC | tcT | 2 | 2 | AY.19 | 0.002281 |
S | 940 | S940S | tcC | tcT | 2 | 2 | AY.23.1 | 0.000835 |
S | 940 | S940S | tcC | tcT | 2 | 2 | AY.27 | 0.000129 |
S | 940 | S940S | tcC | tcT | 2 | 2 | AY.46.3 | 0.001867 |
S | 940 | S940S | tcC | tcT | 2 | 2 | AY.49 | 0.00639 |
S | 940 | S940S | tcC | tcT | 2 | 2 | AY.59 | 0.001059 |
S | 940 | S940S | tcC | tcT | 1 | 2 | AY.7.1 | 0.000113 |
S | 940 | S940S | tcC | tcT | 2 | 2 | AY.74 | 0.000231 |
S | 940 | S940S | tcC | tcT | 2 | 2 | AY.88 | 0.001768 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.1.316 | 0.00185 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.1.348 | 0.001592 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.1.369 | 0.000892 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.1.397 | 0.004505 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.1.46 | 0.008734 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.1.54 | 0.006042 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.1.70 | 0.000682 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.1.89 | 0.012121 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.160.16 | 0.001859 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.177.12 | 0.000303 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.177.4 | 0.000422 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.177.82 | 0.000955 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.177.87 | 0.001456 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.206 | 0.001631 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.236 | 0.004107 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.258.17 | 0.000208 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.298 | 0.004228 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.36.36 | 0.001204 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.369 | 0.00057 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.397 | 0.009709 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.438.1 | 0.000215 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.550 | 0.027397 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.597 | 0.009259 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.619.1 | 0.001283 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.1.91 | 0.004149 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.40 | 0.000729 |
S | 940 | S940S | tcC | tcT | 2 | 2 | B.6.2 | 0.125 |
S | 940 | S940S | tcC | tcT | 2 | 2 | P.1.10 | 0.000539 |
S | 940 | S940S | tcC | tcT | 2 | 2 | P.1.2 | 0.002312 |
S | 940 | S940S | tcC | tcT | 2 | 2 | P.2 | 0.000373 |
S | 940 | S940S | tcC | tcT | 2 | 2 | P.3 | 0.00319 |
S | 940 | S940S | tcC | tcT | 2 | 2 | P.5 | 0.027397 |
S | 940 | S940S | tcC | tcT | 1 | 2 | Q.3 | 0.000145 |
S | 940 | S940S | tcC | tcT | 1 | 1 | A | 0.000387 |
S | 940 | S940S | tcC | tcT | 1 | 1 | A.2 | 0.000662 |
S | 940 | S940S | tcC | tcT | 1 | 1 | A.2.5 | 0.000499 |
S | 940 | S940S | tcC | tcT | 1 | 1 | A.2.5.2 | 0.001572 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AD.2 | 0.000219 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.101 | 0.00049 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.105 | 0.000643 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.106 | 0.000335 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.110 | 0.000113 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.115 | 0.005208 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.116 | 0.000287 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.120.2 | 0.001285 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.13 | 0.000161 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.14 | 0.000088 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.16 | 0.00038 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.28 | 0.00189 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.32 | 0.000532 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.39.2 | 0.001541 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.4.4 | 0.000409 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.46.5 | 0.000198 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.48 | 0.000465 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.53 | 0.000288 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.58 | 0.000907 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.67 | 0.000464 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.69 | 0.000187 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.70 | 0.000209 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.8 | 0.000606 |
S | 940 | S940S | tcC | tcT | 1 | 1 | AY.86 | 0.00083 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.118 | 0.010204 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.137 | 0.0125 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.170 | 0.001247 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.207 | 0.001182 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.25 | 0.000569 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.284 | 0.000107 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.312 | 0.001912 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.354 | 0.004386 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.374 | 0.002375 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.377 | 0.001381 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.416 | 0.000905 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.48 | 0.002874 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.485 | 0.016667 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.487 | 0.005587 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.50 | 0.000679 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.515 | 0.02 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.524 | 0.020833 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.525 | 0.005464 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.59 | 0.006494 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.1.86 | 0.035714 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.111 | 0.001175 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.13 | 0.002375 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.160.10 | 0.008065 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.177.23 | 0.003236 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.177.52 | 0.001757 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.177.54 | 0.000606 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.177.56 | 0.000668 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.177.6 | 0.000977 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.177.60 | 0.000218 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.177.63 | 0.002703 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.177.65 | 0.000665 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.177.72 | 0.00339 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.177.86 | 0.000183 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.214.2 | 0.0006 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.258.2 | 0.004505 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.305 | 0.002151 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.320 | 0.001245 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.333 | 0.010526 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.351.5 | 0.0006 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.356 | 0.001727 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.36.1 | 0.00114 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.36.18 | 0.00042 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.36.7 | 0.004 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.36.8 | 0.001 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.389 | 0.001002 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.396 | 0.000706 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.416.1 | 0.001563 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.426 | 0.001009 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.428 | 0.00102 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.433 | 0.003195 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.443 | 0.004673 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.446 | 0.02 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.468 | 0.005714 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.469 | 0.00361 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.473 | 0.019231 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.497 | 0.000315 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.499 | 0.00105 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.499.1 | 0.111111 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.538 | 0.008065 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.554 | 0.004405 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.560 | 0.00463 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.565 | 0.00081 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.567 | 0.003333 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.575.1 | 0.002439 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.577 | 0.000687 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.582 | 0.000491 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.603 | 0.010638 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.1.9.5 | 0.005682 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.3 | 0.000831 |
S | 940 | S940S | tcC | tcT | 1 | 1 | B.3.1 | 0.001658 |
S | 940 | S940S | tcC | tcT | 1 | 1 | C.1.2 | 0.004255 |
S | 940 | S940S | tcC | tcT | 1 | 1 | C.11 | 0.010638 |
S | 940 | S940S | tcC | tcT | 1 | 1 | C.36 | 0.000911 |
S | 940 | S940S | tcC | tcT | 1 | 1 | C.37.1 | 0.002618 |
S | 940 | S940S | tcC | tcT | 1 | 1 | L.3 | 0.003546 |
S | 940 | S940S | tcC | tcT | 1 | 1 | P.1.12 | 0.000484 |
S | 940 | S940S | tcC | tcT | 1 | 1 | P.1.4 | 0.000977 |
S | 940 | S940S | tcC | tcT | 1 | 1 | P.1.9 | 0.004808 |
S | 940 | S940S | tcC | tcT | 1 | 1 | Q.4 | 0.000455 |
S | 940 | S940S | tcC | tcT | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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