CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 940 & Codon = tTc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	940	S940F		nonsyn	tCc	tTc	4019	4013	0.998507	24380-24382

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	940	S940F	tCc	tTc	4013	4019	All	0.000768
S	940	S940F	tCc	tTc	1292	1292	B.1.1.7	0.001157
S	940	S940F	tCc	tTc	516	516	AY.4	0.000803
S	940	S940F	tCc	tTc	428	428	B.1.234	0.056472
S	940	S940F	tCc	tTc	161	161	B.1.617.2	0.000606
S	940	S940F	tCc	tTc	124	124	AY.13	0.019961
S	940	S940F	tCc	tTc	116	116	AY.43	0.000514
S	940	S940F	tCc	tTc	75	76	B.1.1	0.001361
S	940	S940F	tCc	tTc	75	75	AY.118	0.004699
S	940	S940F	tCc	tTc	69	69	B.1	0.000632
S	940	S940F	tCc	tTc	66	66	AY.103	0.00041
S	940	S940F	tCc	tTc	62	62	B.1.2	0.000546
S	940	S940F	tCc	tTc	54	54	AY.23	0.003766
S	940	S940F	tCc	tTc	48	48	B.1.258	0.003194
S	940	S940F	tCc	tTc	45	45	AY.44	0.000274
S	940	S940F	tCc	tTc	44	44	AY.25	0.000265
S	940	S940F	tCc	tTc	34	34	AY.9.1	0.002847
S	940	S940F	tCc	tTc	32	32	B.1.221	0.002273
S	940	S940F	tCc	tTc	31	31	B.1.160	0.000967
S	940	S940F	tCc	tTc	29	29	AY.3	0.000288
S	940	S940F	tCc	tTc	28	28	AY.29	0.000442
S	940	S940F	tCc	tTc	27	27	B.1.526	0.000635
S	940	S940F	tCc	tTc	25	25	AY.61	0.002619
S	940	S940F	tCc	tTc	25	25	B.1.1.374	0.059382
S	940	S940F	tCc	tTc	24	24	AY.100	0.001104
S	940	S940F	tCc	tTc	22	22	P.1	0.000347
S	940	S940F	tCc	tTc	20	20	AY.33	0.001336
S	940	S940F	tCc	tTc	20	20	B.1.177	0.000263
S	940	S940F	tCc	tTc	16	16	B.1.351	0.000476
S	940	S940F	tCc	tTc	16	16	B.1.429	0.000376
S	940	S940F	tCc	tTc	14	14	AY.6	0.000576
S	940	S940F	tCc	tTc	14	14	AY.9.2	0.000514
S	940	S940F	tCc	tTc	13	13	AY.75.1	0.002344
S	940	S940F	tCc	tTc	12	12	B.1.213	0.179104
S	940	S940F	tCc	tTc	11	11	AY.20	0.000428
S	940	S940F	tCc	tTc	11	11	B.1.1.519	0.000437
S	940	S940F	tCc	tTc	11	11	B.1.36	0.001605
S	940	S940F	tCc	tTc	11	11	B.1.637	0.000804
S	940	S940F	tCc	tTc	10	10	AY.102	0.000265
S	940	S940F	tCc	tTc	10	10	AY.39	0.000247
S	940	S940F	tCc	tTc	10	10	AY.4.2	0.000217
S	940	S940F	tCc	tTc	10	10	B.1.177.15	0.006309
S	940	S940F	tCc	tTc	10	10	B.1.351.3	0.008764
S	940	S940F	tCc	tTc	8	8	AY.46.4	0.001316
S	940	S940F	tCc	tTc	8	8	AY.5	0.000165
S	940	S940F	tCc	tTc	8	8	C.37	0.000929
S	940	S940F	tCc	tTc	8	8	D.2	0.0006
S	940	S940F	tCc	tTc	7	7	AY.36	0.001037
S	940	S940F	tCc	tTc	7	7	B.1.1.434	0.00244
S	940	S940F	tCc	tTc	7	7	B.1.427	0.000353
S	940	S940F	tCc	tTc	6	6	AY.45	0.00073
S	940	S940F	tCc	tTc	6	6	B.1.416.1	0.009375
S	940	S940F	tCc	tTc	5	5	A.1	0.001409
S	940	S940F	tCc	tTc	5	5	AY.119	0.000177
S	940	S940F	tCc	tTc	5	5	AY.121	0.000677
S	940	S940F	tCc	tTc	5	5	B.1.1.311	0.001791
S	940	S940F	tCc	tTc	5	5	B.1.177.65	0.003327
S	940	S940F	tCc	tTc	5	5	B.1.596	0.000436
S	940	S940F	tCc	tTc	4	4	AE.8	0.001956
S	940	S940F	tCc	tTc	4	4	AY.117	0.000338
S	940	S940F	tCc	tTc	4	4	AY.4.5	0.00043
S	940	S940F	tCc	tTc	4	4	AY.71	0.0019
S	940	S940F	tCc	tTc	4	4	AY.98.1	0.000194
S	940	S940F	tCc	tTc	4	4	B.1.1.39	0.002039
S	940	S940F	tCc	tTc	4	4	B.1.398	0.011905
S	940	S940F	tCc	tTc	4	4	B.1.628	0.001409
S	940	S940F	tCc	tTc	3	3	AY.108	0.003308
S	940	S940F	tCc	tTc	3	3	AY.111	0.000549
S	940	S940F	tCc	tTc	3	3	AY.116	0.00086
S	940	S940F	tCc	tTc	3	3	AY.116.1	0.000934
S	940	S940F	tCc	tTc	3	3	AY.26	0.000085
S	940	S940F	tCc	tTc	3	3	AY.34	0.000291
S	940	S940F	tCc	tTc	3	3	AY.42	0.000121
S	940	S940F	tCc	tTc	3	3	AY.47	0.000093
S	940	S940F	tCc	tTc	3	3	AY.75	0.000168
S	940	S940F	tCc	tTc	3	3	AY.85	0.001282
S	940	S940F	tCc	tTc	3	3	AY.99.2	0.000276
S	940	S940F	tCc	tTc	3	3	B.1.239	0.003663
S	940	S940F	tCc	tTc	3	3	B.1.241	0.002435
S	940	S940F	tCc	tTc	3	3	B.1.243	0.000209
S	940	S940F	tCc	tTc	3	3	B.1.369	0.000856
S	940	S940F	tCc	tTc	3	3	B.1.568	0.003333
S	940	S940F	tCc	tTc	3	3	B.1.8	0.005917
S	940	S940F	tCc	tTc	3	3	D.5	0.014925
S	940	S940F	tCc	tTc	3	3	P.1.10	0.000808
S	940	S940F	tCc	tTc	3	3	P.1.14	0.000143
S	940	S940F	tCc	tTc	3	3	Q.1	0.000379
S	940	S940F	tCc	tTc	2	2		0.111111
S	940	S940F	tCc	tTc	2	2	AD.2	0.000438
S	940	S940F	tCc	tTc	2	2	AU.3	0.004219
S	940	S940F	tCc	tTc	2	2	AY.110	0.000225
S	940	S940F	tCc	tTc	2	2	AY.120	0.000074
S	940	S940F	tCc	tTc	2	2	AY.32	0.001065
S	940	S940F	tCc	tTc	2	2	AY.39.1	0.000079
S	940	S940F	tCc	tTc	2	2	AY.5.3	0.000675
S	940	S940F	tCc	tTc	2	2	AY.98	0.000158
S	940	S940F	tCc	tTc	2	2	B.1.1.107	0.064516
S	940	S940F	tCc	tTc	2	2	B.1.1.214	0.000111
S	940	S940F	tCc	tTc	2	2	B.1.1.216	0.001781
S	940	S940F	tCc	tTc	2	2	B.1.1.222	0.000408
S	940	S940F	tCc	tTc	2	2	B.1.1.241	0.004141
S	940	S940F	tCc	tTc	2	2	B.1.1.301	0.002358
S	940	S940F	tCc	tTc	2	2	B.1.1.348	0.001592
S	940	S940F	tCc	tTc	2	2	B.1.1.48	0.005747
S	940	S940F	tCc	tTc	2	2	B.1.1.63	0.000772
S	940	S940F	tCc	tTc	1	2	B.1.111	0.001175
S	940	S940F	tCc	tTc	2	2	B.1.177.81	0.000379
S	940	S940F	tCc	tTc	2	2	B.1.258.14	0.001961
S	940	S940F	tCc	tTc	2	2	B.1.258.17	0.000208
S	940	S940F	tCc	tTc	2	2	B.1.36.1	0.002281
S	940	S940F	tCc	tTc	2	2	B.1.389	0.002004
S	940	S940F	tCc	tTc	2	2	B.1.408	0.00738
S	940	S940F	tCc	tTc	2	2	B.1.420	0.020833
S	940	S940F	tCc	tTc	2	2	B.1.459	0.008163
S	940	S940F	tCc	tTc	2	2	B.1.466.2	0.000782
S	940	S940F	tCc	tTc	2	2	B.1.588	0.00182
S	940	S940F	tCc	tTc	2	2	B.1.609	0.000959
S	940	S940F	tCc	tTc	2	2	B.1.617.1	0.000258
S	940	S940F	tCc	tTc	2	2	B.1.621	0.000177
S	940	S940F	tCc	tTc	2	2	B.4	0.004415
S	940	S940F	tCc	tTc	2	2	N.5	0.003534
S	940	S940F	tCc	tTc	2	2	P.2	0.000373
S	940	S940F	tCc	tTc	1	1	A.2	0.000662
S	940	S940F	tCc	tTc	1	1	A.5	0.001923
S	940	S940F	tCc	tTc	1	1	AY.1	0.000396
S	940	S940F	tCc	tTc	1	1	AY.106	0.000335
S	940	S940F	tCc	tTc	1	1	AY.113	0.000142
S	940	S940F	tCc	tTc	1	1	AY.115	0.005208
S	940	S940F	tCc	tTc	1	1	AY.19	0.00114
S	940	S940F	tCc	tTc	1	1	AY.22	0.002092
S	940	S940F	tCc	tTc	1	1	AY.35	0.000233
S	940	S940F	tCc	tTc	1	1	AY.39.1.1	0.000725
S	940	S940F	tCc	tTc	1	1	AY.46.5	0.000198
S	940	S940F	tCc	tTc	1	1	AY.55	0.000917
S	940	S940F	tCc	tTc	1	1	AY.62	0.000436
S	940	S940F	tCc	tTc	1	1	AY.68	0.000274
S	940	S940F	tCc	tTc	1	1	AY.69	0.000187
S	940	S940F	tCc	tTc	1	1	AY.83	0.001724
S	940	S940F	tCc	tTc	1	1	AY.97	0.001701
S	940	S940F	tCc	tTc	1	1	B.1.1.138	0.006061
S	940	S940F	tCc	tTc	1	1	B.1.1.149	0.016393
S	940	S940F	tCc	tTc	1	1	B.1.1.153	0.001095
S	940	S940F	tCc	tTc	1	1	B.1.1.157	0.000913
S	940	S940F	tCc	tTc	1	1	B.1.1.186	0.003436
S	940	S940F	tCc	tTc	1	1	B.1.1.209	0.008929
S	940	S940F	tCc	tTc	1	1	B.1.1.210	0.005714
S	940	S940F	tCc	tTc	1	1	B.1.1.25	0.000569
S	940	S940F	tCc	tTc	1	1	B.1.1.28	0.000311
S	940	S940F	tCc	tTc	1	1	B.1.1.291	0.000742
S	940	S940F	tCc	tTc	1	1	B.1.1.294	0.001266
S	940	S940F	tCc	tTc	1	1	B.1.1.336	0.016667
S	940	S940F	tCc	tTc	1	1	B.1.1.344	0.010753
S	940	S940F	tCc	tTc	1	1	B.1.1.362	0.005618
S	940	S940F	tCc	tTc	1	1	B.1.1.369	0.000446
S	940	S940F	tCc	tTc	1	1	B.1.1.37	0.000193
S	940	S940F	tCc	tTc	1	1	B.1.1.372	0.000689
S	940	S940F	tCc	tTc	1	1	B.1.1.409	0.002833
S	940	S940F	tCc	tTc	1	1	B.1.1.420	0.001006
S	940	S940F	tCc	tTc	1	1	B.1.1.423	0.0625
S	940	S940F	tCc	tTc	1	1	B.1.1.484	0.1
S	940	S940F	tCc	tTc	1	1	B.1.1.50	0.000679
S	940	S940F	tCc	tTc	1	1	B.1.1.70	0.000341
S	940	S940F	tCc	tTc	1	1	B.1.139	0.000733
S	940	S940F	tCc	tTc	1	1	B.1.157	0.002985
S	940	S940F	tCc	tTc	1	1	B.1.177.21	0.000076
S	940	S940F	tCc	tTc	1	1	B.1.177.4	0.000211
S	940	S940F	tCc	tTc	1	1	B.1.177.42	0.000894
S	940	S940F	tCc	tTc	1	1	B.1.177.57	0.000281
S	940	S940F	tCc	tTc	1	1	B.1.177.60	0.000218
S	940	S940F	tCc	tTc	1	1	B.1.177.68	0.015152
S	940	S940F	tCc	tTc	1	1	B.1.181	0.019608
S	940	S940F	tCc	tTc	1	1	B.1.208	0.04
S	940	S940F	tCc	tTc	1	1	B.1.240	0.000216
S	940	S940F	tCc	tTc	1	1	B.1.252	0.006623
S	940	S940F	tCc	tTc	1	1	B.1.254	0.025
S	940	S940F	tCc	tTc	1	1	B.1.289	0.00266
S	940	S940F	tCc	tTc	1	1	B.1.311	0.000275
S	940	S940F	tCc	tTc	1	1	B.1.36.20	0.016949
S	940	S940F	tCc	tTc	1	1	B.1.36.35	0.002604
S	940	S940F	tCc	tTc	1	1	B.1.36.8	0.001
S	940	S940F	tCc	tTc	1	1	B.1.377	0.004566
S	940	S940F	tCc	tTc	1	1	B.1.438.1	0.000107
S	940	S940F	tCc	tTc	1	1	B.1.471	0.002732
S	940	S940F	tCc	tTc	1	1	B.1.503	0.002488
S	940	S940F	tCc	tTc	1	1	B.1.517	0.000427
S	940	S940F	tCc	tTc	1	1	B.1.525	0.000113
S	940	S940F	tCc	tTc	1	1	B.1.538	0.008065
S	940	S940F	tCc	tTc	1	1	B.1.595	0.000261
S	940	S940F	tCc	tTc	1	1	B.1.595.4	0.007299
S	940	S940F	tCc	tTc	1	1	B.1.618	0.004032
S	940	S940F	tCc	tTc	1	1	B.1.625	0.002353
S	940	S940F	tCc	tTc	1	1	B.3.1	0.001658
S	940	S940F	tCc	tTc	1	1	B.40	0.000364
S	940	S940F	tCc	tTc	1	1	B.41	0.008
S	940	S940F	tCc	tTc	1	1	B.45	0.003831
S	940	S940F	tCc	tTc	1	1	C.1.2	0.004255
S	940	S940F	tCc	tTc	1	1	C.11	0.010638
S	940	S940F	tCc	tTc	1	1	C.16	0.00106
S	940	S940F	tCc	tTc	1	1	C.23	0.005814
S	940	S940F	tCc	tTc	1	1	C.30	0.001727
S	940	S940F	tCc	tTc	1	1	P.1.15	0.000232
S	940	S940F	tCc	tTc	1	1	Q.3	0.000145
S	940	S940F	tCc	tTc	1	1	Q.8	0.000165
S	940	S940F	tCc	tTc	1	1	R.1	0.00009
S	940	S940F	tCc	tTc	1	1	W.1	0.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.