CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 937 | S937S | syn | tcA | tcG | 1520 | 1421 | 0.934868 | 24371-24373 | |
S | 937 | S937S | syn | tcA | tcT | 1520 | 54 | 0.0355263 | 24371-24373 | |
S | 937 | S937S | syn | tcA | tcC | 1520 | 45 | 0.0296053 | 24371-24373 | |
S | 937 | S937A | nonsyn | Tca | Gca | 237 | 237 | 1 | 24371-24373 | |
S | 937 | S937L | nonsyn | tCa | tTa | 233 | 231 | 0.991416 | 24371-24373 | |
S | 937 | S937L | nonsyn | TCA | CTT | 233 | 2 | 0.00858369 | 24371-24373 | |
S | 937 | S937T | nonsyn | Tca | Aca | 132 | 132 | 1 | 24371-24373 | |
S | 937 | S937del | del | TCA | --- | 83 | 83 | 1 | 24371-24373 | |
S | 937 | S937del1 | del | tcA | tc- | 10 | 7 | 0.7 | 24371-24373 | |
S | 937 | S937del1 | del | Tca | -ca | 10 | 3 | 0.3 | 24371-24373 | |
S | 937 | S937X | nonsyn | tCa | tAa | 7 | 6 | 0.857143 | 24371-24373 | |
S | 937 | S937X | nonsyn | tCa | tGa | 7 | 1 | 0.142857 | 24371-24373 | |
S | 937 | S937P | nonsyn | Tca | Cca | 6 | 6 | 1 | 24371-24373 | |
S | 937 | S937V | nonsyn | TCa | GTa | 3 | 2 | 0.666667 | 24371-24373 | |
S | 937 | S937V | nonsyn | TCA | GTG | 3 | 1 | 0.333333 | 24371-24373 | |
S | 937 | S937Q | nonsyn | TCa | CAa | 2 | 2 | 1 | 24371-24373 | |
S | 937 | S937F | nonsyn | tCA | tTC | 1 | 1 | 1 | 24371-24373 | |
S | 937 | S937E | nonsyn | TCa | GAa | 1 | 1 | 1 | 24371-24373 | |
S | 937 | S937I | nonsyn | TCa | ATa | 1 | 1 | 1 | 24371-24373 | |
S | 937 | S937R | nonsyn | TCa | AGa | 1 | 1 | 1 | 24371-24373 | |
S | 937 | S937M | nonsyn | TCA | ATG | 1 | 1 | 1 | 24371-24373 | |
S | 937 | S937del2 | del | tCA | t-- | 1 | 1 | 1 | 24371-24373 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 937 | S937S | tcA | tcG | 1421 | 1520 | All | 0.000272 |
S | 937 | S937S | tcA | tcT | 54 | 1520 | All | 0.00001 |
S | 937 | S937S | tcA | tcC | 45 | 1520 | All | 0.000009 |
S | 937 | S937S | tcA | tcG | 993 | 993 | B.1.1.420 | 0.998994 |
S | 937 | S937A | Tca | Gca | 237 | 237 | All | 0.000045 |
S | 937 | S937L | tCa | tTa | 231 | 233 | All | 0.000044 |
S | 937 | S937L | TCA | CTT | 2 | 233 | All | 0 |
S | 937 | S937A | Tca | Gca | 201 | 201 | AY.25 | 0.001209 |
S | 937 | S937S | tcA | tcG | 131 | 142 | B.1.1.7 | 0.000117 |
S | 937 | S937S | tcA | tcT | 9 | 142 | B.1.1.7 | 0.000008 |
S | 937 | S937S | tcA | tcC | 2 | 142 | B.1.1.7 | 0.000002 |
S | 937 | S937T | Tca | Aca | 132 | 132 | All | 0.000025 |
S | 937 | S937S | tcA | tcG | 85 | 88 | B.1 | 0.000779 |
S | 937 | S937S | tcA | tcT | 2 | 88 | B.1 | 0.000018 |
S | 937 | S937S | tcA | tcC | 1 | 88 | B.1 | 0.000009 |
S | 937 | S937del | TCA | --- | 83 | 83 | All | 0.000016 |
S | 937 | S937S | tcA | tcG | 47 | 58 | AY.4 | 0.000073 |
S | 937 | S937S | tcA | tcT | 8 | 58 | AY.4 | 0.000012 |
S | 937 | S937S | tcA | tcC | 3 | 58 | AY.4 | 0.000005 |
S | 937 | S937S | tcA | tcG | 52 | 53 | B.1.1 | 0.000943 |
S | 937 | S937S | tcA | tcT | 1 | 53 | B.1.1 | 0.000018 |
S | 937 | S937del | TCA | --- | 36 | 36 | B.1.1.7 | 0.000032 |
S | 937 | S937T | Tca | Aca | 28 | 28 | AY.4 | 0.000044 |
S | 937 | S937S | tcA | tcG | 26 | 26 | AY.43 | 0.000115 |
S | 937 | S937T | Tca | Aca | 26 | 26 | B.1.617.2 | 0.000098 |
S | 937 | S937L | tCa | tTa | 23 | 23 | AY.4 | 0.000036 |
S | 937 | S937S | tcA | tcC | 19 | 21 | AY.39.1 | 0.000753 |
S | 937 | S937S | tcA | tcG | 1 | 21 | AY.39.1 | 0.00004 |
S | 937 | S937S | tcA | tcT | 1 | 21 | AY.39.1 | 0.00004 |
S | 937 | S937L | tCa | tTa | 20 | 20 | B.1.1.7 | 0.000018 |
S | 937 | S937S | tcA | tcG | 16 | 19 | AY.3 | 0.000159 |
S | 937 | S937S | tcA | tcC | 3 | 19 | AY.3 | 0.00003 |
S | 937 | S937L | tCa | tTa | 17 | 17 | AY.103 | 0.000106 |
S | 937 | S937T | Tca | Aca | 14 | 14 | AY.43 | 0.000062 |
S | 937 | S937L | tCa | tTa | 14 | 14 | B.1.177 | 0.000184 |
S | 937 | S937S | tcA | tcG | 7 | 12 | B.1.617.2 | 0.000026 |
S | 937 | S937S | tcA | tcT | 4 | 12 | B.1.617.2 | 0.000015 |
S | 937 | S937S | tcA | tcC | 1 | 12 | B.1.617.2 | 0.000004 |
S | 937 | S937S | tcA | tcT | 7 | 11 | AY.44 | 0.000043 |
S | 937 | S937S | tcA | tcC | 4 | 11 | AY.44 | 0.000024 |
S | 937 | S937L | tCa | tTa | 11 | 11 | B.1.617.2 | 0.000041 |
S | 937 | S937del1 | tcA | tc- | 7 | 10 | All | 0.000001 |
S | 937 | S937del1 | Tca | -ca | 3 | 10 | All | 0.000001 |
S | 937 | S937L | tCa | tTa | 10 | 10 | B.1.2 | 0.000088 |
S | 937 | S937L | tCa | tTa | 9 | 9 | B.1.1 | 0.000163 |
S | 937 | S937L | tCa | tTa | 8 | 8 | AY.120 | 0.000297 |
S | 937 | S937L | tCa | tTa | 8 | 8 | AY.43 | 0.000035 |
S | 937 | S937A | Tca | Gca | 8 | 8 | AY.47 | 0.000249 |
S | 937 | S937del | TCA | --- | 8 | 8 | B.1.177 | 0.000105 |
S | 937 | S937X | tCa | tAa | 6 | 7 | All | 0.000001 |
S | 937 | S937X | tCa | tGa | 1 | 7 | All | 0 |
S | 937 | S937T | Tca | Aca | 7 | 7 | AY.107 | 0.003262 |
S | 937 | S937L | tCa | tTa | 7 | 7 | AY.25 | 0.000042 |
S | 937 | S937T | Tca | Aca | 7 | 7 | AY.54 | 0.000667 |
S | 937 | S937L | tCa | tTa | 7 | 7 | B.1 | 0.000064 |
S | 937 | S937P | Tca | Cca | 6 | 6 | All | 0.000001 |
S | 937 | S937S | tcA | tcC | 6 | 6 | AY.47 | 0.000187 |
S | 937 | S937S | tcA | tcG | 5 | 6 | AY.6 | 0.000206 |
S | 937 | S937S | tcA | tcT | 1 | 6 | AY.6 | 0.000041 |
S | 937 | S937L | tCa | tTa | 5 | 5 | AY.44 | 0.00003 |
S | 937 | S937L | tCa | tTa | 5 | 5 | AY.9.2 | 0.000184 |
S | 937 | S937T | Tca | Aca | 5 | 5 | B.1.1.7 | 0.000004 |
S | 937 | S937T | Tca | Aca | 5 | 5 | B.1.2 | 0.000044 |
S | 937 | S937S | tcA | tcG | 4 | 5 | B.1.429 | 0.000094 |
S | 937 | S937S | tcA | tcC | 1 | 5 | B.1.429 | 0.000024 |
S | 937 | S937S | tcA | tcG | 4 | 5 | B.1.596 | 0.000349 |
S | 937 | S937S | tcA | tcT | 1 | 5 | B.1.596 | 0.000087 |
S | 937 | S937S | tcA | tcG | 4 | 4 | AY.103 | 0.000025 |
S | 937 | S937S | tcA | tcG | 4 | 4 | AY.29 | 0.000063 |
S | 937 | S937L | tCa | tTa | 4 | 4 | AY.39 | 0.000099 |
S | 937 | S937A | Tca | Gca | 4 | 4 | B.1 | 0.000037 |
S | 937 | S937A | Tca | Gca | 4 | 4 | B.1.1.7 | 0.000004 |
S | 937 | S937S | tcA | tcT | 4 | 4 | B.1.258 | 0.000266 |
S | 937 | S937L | tCa | tTa | 4 | 4 | B.1.429 | 0.000094 |
S | 937 | S937del | TCA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
S | 937 | S937L | tCa | tTa | 4 | 4 | B.1.637 | 0.000292 |
S | 937 | S937V | TCa | GTa | 2 | 3 | All | 0 |
S | 937 | S937V | TCA | GTG | 1 | 3 | All | 0 |
S | 937 | S937L | tCa | tTa | 3 | 3 | AY.117 | 0.000254 |
S | 937 | S937L | tCa | tTa | 3 | 3 | AY.118 | 0.000188 |
S | 937 | S937L | tCa | tTa | 3 | 3 | AY.14 | 0.000264 |
S | 937 | S937L | tCa | tTa | 3 | 3 | AY.29 | 0.000047 |
S | 937 | S937del | TCA | --- | 3 | 3 | AY.4 | 0.000005 |
S | 937 | S937A | Tca | Gca | 3 | 3 | AY.44 | 0.000018 |
S | 937 | S937S | tcA | tcG | 3 | 3 | AY.5 | 0.000062 |
S | 937 | S937A | Tca | Gca | 3 | 3 | AY.5 | 0.000062 |
S | 937 | S937X | tCa | tAa | 2 | 3 | B.1 | 0.000018 |
S | 937 | S937X | tCa | tGa | 1 | 3 | B.1 | 0.000009 |
S | 937 | S937T | Tca | Aca | 3 | 3 | B.1.1.519 | 0.000119 |
S | 937 | S937P | Tca | Cca | 3 | 3 | B.1.1.7 | 0.000003 |
S | 937 | S937del1 | Tca | -ca | 2 | 3 | B.1.1.7 | 0.000002 |
S | 937 | S937del1 | tcA | tc- | 1 | 3 | B.1.1.7 | 0.000001 |
S | 937 | S937S | tcA | tcG | 2 | 3 | B.1.351 | 0.000059 |
S | 937 | S937S | tcA | tcT | 1 | 3 | B.1.351 | 0.00003 |
S | 937 | S937T | Tca | Aca | 3 | 3 | B.1.596 | 0.000261 |
S | 937 | S937S | tcA | tcG | 3 | 3 | B.40 | 0.001093 |
S | 937 | S937S | tcA | tcG | 3 | 3 | P.1 | 0.000047 |
S | 937 | S937T | Tca | Aca | 3 | 3 | P.1 | 0.000047 |
S | 937 | S937Q | TCa | CAa | 2 | 2 | 0.111111 | |
S | 937 | S937L | TCA | CTT | 2 | 2 | 0.111111 | |
S | 937 | S937V | TCa | GTa | 2 | 2 | 0.111111 | |
S | 937 | S937Q | TCa | CAa | 2 | 2 | All | 0 |
S | 937 | S937S | tcA | tcG | 2 | 2 | AT.1 | 0.010256 |
S | 937 | S937T | Tca | Aca | 2 | 2 | AY.102 | 0.000053 |
S | 937 | S937S | tcA | tcG | 2 | 2 | AY.111 | 0.000366 |
S | 937 | S937T | Tca | Aca | 2 | 2 | AY.118 | 0.000125 |
S | 937 | S937L | tCa | tTa | 2 | 2 | AY.13 | 0.000322 |
S | 937 | S937T | Tca | Aca | 2 | 2 | AY.23 | 0.000139 |
S | 937 | S937S | tcA | tcC | 1 | 2 | AY.25 | 0.000006 |
S | 937 | S937S | tcA | tcT | 1 | 2 | AY.25 | 0.000006 |
S | 937 | S937L | tCa | tTa | 2 | 2 | AY.26 | 0.000057 |
S | 937 | S937S | tcA | tcG | 2 | 2 | AY.27 | 0.000129 |
S | 937 | S937T | Tca | Aca | 2 | 2 | AY.39 | 0.000049 |
S | 937 | S937S | tcA | tcG | 2 | 2 | AY.4.2 | 0.000043 |
S | 937 | S937del | TCA | --- | 2 | 2 | AY.4.5 | 0.000215 |
S | 937 | S937T | Tca | Aca | 2 | 2 | AY.42 | 0.00008 |
S | 937 | S937L | tCa | tTa | 2 | 2 | AY.47 | 0.000062 |
S | 937 | S937L | tCa | tTa | 2 | 2 | AY.5 | 0.000041 |
S | 937 | S937S | tcA | tcG | 2 | 2 | AY.5.4 | 0.000553 |
S | 937 | S937S | tcA | tcT | 2 | 2 | AY.54 | 0.000191 |
S | 937 | S937L | tCa | tTa | 2 | 2 | AY.6 | 0.000082 |
S | 937 | S937L | tCa | tTa | 2 | 2 | AY.98 | 0.000158 |
S | 937 | S937T | Tca | Aca | 2 | 2 | B.1.1.274 | 0.010101 |
S | 937 | S937S | tcA | tcT | 2 | 2 | B.1.1.385 | 0.008929 |
S | 937 | S937S | tcA | tcG | 2 | 2 | B.1.1.83 | 0.00542 |
S | 937 | S937L | tCa | tTa | 2 | 2 | B.1.177.54 | 0.001213 |
S | 937 | S937del | TCA | --- | 2 | 2 | B.1.177.7 | 0.00033 |
S | 937 | S937S | tcA | tcT | 1 | 2 | B.1.177.81 | 0.000189 |
S | 937 | S937S | tcA | tcG | 1 | 2 | B.1.177.81 | 0.000189 |
S | 937 | S937S | tcA | tcT | 2 | 2 | B.1.240 | 0.000431 |
S | 937 | S937T | Tca | Aca | 2 | 2 | B.1.243 | 0.000139 |
S | 937 | S937S | tcA | tcC | 1 | 2 | B.1.258.17 | 0.000104 |
S | 937 | S937S | tcA | tcG | 1 | 2 | B.1.258.17 | 0.000104 |
S | 937 | S937L | tCa | tTa | 2 | 2 | B.1.351 | 0.000059 |
S | 937 | S937A | Tca | Gca | 2 | 2 | B.1.429 | 0.000047 |
S | 937 | S937S | tcA | tcT | 2 | 2 | B.1.509 | 0.001732 |
S | 937 | S937del | TCA | --- | 2 | 2 | B.1.526 | 0.000047 |
S | 937 | S937A | Tca | Gca | 2 | 2 | B.1.564 | 0.000852 |
S | 937 | S937L | tCa | tTa | 2 | 2 | B.1.582 | 0.000981 |
S | 937 | S937A | Tca | Gca | 2 | 2 | B.1.617.2 | 0.000008 |
S | 937 | S937L | tCa | tTa | 2 | 2 | B.1.8 | 0.003945 |
S | 937 | S937T | Tca | Aca | 2 | 2 | C.37 | 0.000232 |
S | 937 | S937A | Tca | Gca | 1 | 1 | 0.055556 | |
S | 937 | S937P | Tca | Cca | 1 | 1 | 0.055556 | |
S | 937 | S937del | TCA | --- | 1 | 1 | A | 0.000387 |
S | 937 | S937T | Tca | Aca | 1 | 1 | A.2 | 0.000662 |
S | 937 | S937R | TCa | AGa | 1 | 1 | All | 0 |
S | 937 | S937F | tCA | tTC | 1 | 1 | All | 0 |
S | 937 | S937E | TCa | GAa | 1 | 1 | All | 0 |
S | 937 | S937I | TCa | ATa | 1 | 1 | All | 0 |
S | 937 | S937del2 | tCA | t-- | 1 | 1 | All | 0 |
S | 937 | S937M | TCA | ATG | 1 | 1 | All | 0 |
S | 937 | S937S | tcA | tcG | 1 | 1 | AY.100 | 0.000046 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.100 | 0.000046 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.102 | 0.000027 |
S | 937 | S937T | Tca | Aca | 1 | 1 | AY.103 | 0.000006 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.111 | 0.000183 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.113 | 0.000142 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.116.1 | 0.000311 |
S | 937 | S937T | Tca | Aca | 1 | 1 | AY.117 | 0.000085 |
S | 937 | S937S | tcA | tcT | 1 | 1 | AY.119 | 0.000035 |
S | 937 | S937S | tcA | tcC | 1 | 1 | AY.120 | 0.000037 |
S | 937 | S937del | TCA | --- | 1 | 1 | AY.120 | 0.000037 |
S | 937 | S937T | Tca | Aca | 1 | 1 | AY.20 | 0.000039 |
S | 937 | S937S | tcA | tcT | 1 | 1 | AY.24 | 0.000431 |
S | 937 | S937T | Tca | Aca | 1 | 1 | AY.25 | 0.000006 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.3 | 0.00001 |
S | 937 | S937A | Tca | Gca | 1 | 1 | AY.3 | 0.00001 |
S | 937 | S937T | Tca | Aca | 1 | 1 | AY.3 | 0.00001 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.3.1 | 0.000085 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.33 | 0.000067 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.34 | 0.000097 |
S | 937 | S937T | Tca | Aca | 1 | 1 | AY.34.1 | 0.00051 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.37 | 0.000316 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.38 | 0.000499 |
S | 937 | S937S | tcA | tcG | 1 | 1 | AY.38 | 0.000499 |
S | 937 | S937S | tcA | tcG | 1 | 1 | AY.39 | 0.000025 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.39.1 | 0.00004 |
S | 937 | S937A | Tca | Gca | 1 | 1 | AY.4 | 0.000002 |
S | 937 | S937del1 | Tca | -ca | 1 | 1 | AY.4 | 0.000002 |
S | 937 | S937E | TCa | GAa | 1 | 1 | AY.4.2 | 0.000022 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.4.2 | 0.000022 |
S | 937 | S937A | Tca | Gca | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 937 | S937S | tcA | tcG | 1 | 1 | AY.42 | 0.00004 |
S | 937 | S937I | TCa | ATa | 1 | 1 | AY.43 | 0.000004 |
S | 937 | S937A | Tca | Gca | 1 | 1 | AY.43 | 0.000004 |
S | 937 | S937del | TCA | --- | 1 | 1 | AY.43 | 0.000004 |
S | 937 | S937P | Tca | Cca | 1 | 1 | AY.43 | 0.000004 |
S | 937 | S937del1 | tcA | tc- | 1 | 1 | AY.43 | 0.000004 |
S | 937 | S937del | TCA | --- | 1 | 1 | AY.44 | 0.000006 |
S | 937 | S937T | Tca | Aca | 1 | 1 | AY.44 | 0.000006 |
S | 937 | S937T | Tca | Aca | 1 | 1 | AY.45 | 0.000122 |
S | 937 | S937del | TCA | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.46.3 | 0.000934 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.46.6 | 0.000072 |
S | 937 | S937T | Tca | Aca | 1 | 1 | AY.46.6 | 0.000072 |
S | 937 | S937S | tcA | tcG | 1 | 1 | AY.48 | 0.000465 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.50 | 0.000799 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.52 | 0.000814 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.54 | 0.000095 |
S | 937 | S937del | TCA | --- | 1 | 1 | AY.6 | 0.000041 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.61 | 0.000105 |
S | 937 | S937del1 | tcA | tc- | 1 | 1 | AY.66 | 0.00107 |
S | 937 | S937del | TCA | --- | 1 | 1 | AY.67 | 0.000464 |
S | 937 | S937del | TCA | --- | 1 | 1 | AY.81 | 0.001992 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.9 | 0.000068 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.9.1 | 0.000084 |
S | 937 | S937T | Tca | Aca | 1 | 1 | AY.92 | 0.000287 |
S | 937 | S937L | tCa | tTa | 1 | 1 | AY.98.1 | 0.000048 |
S | 937 | S937del | TCA | --- | 1 | 1 | AY.99 | 0.001049 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B | 0.000128 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1 | 0.000009 |
S | 937 | S937X | tCa | tAa | 1 | 1 | B.1.1 | 0.000018 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.1 | 0.000018 |
S | 937 | S937R | TCa | AGa | 1 | 1 | B.1.1 | 0.000018 |
S | 937 | S937S | tcA | tcG | 1 | 1 | B.1.1.174 | 0.003378 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.1.189 | 0.001513 |
S | 937 | S937S | tcA | tcG | 1 | 1 | B.1.1.200 | 0.007463 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.1.25 | 0.000569 |
S | 937 | S937S | tcA | tcG | 1 | 1 | B.1.1.254 | 0.011236 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.1.257 | 0.009709 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.1.28 | 0.000311 |
S | 937 | S937T | Tca | Aca | 1 | 1 | B.1.1.284 | 0.000107 |
S | 937 | S937S | tcA | tcG | 1 | 1 | B.1.1.307 | 0.002532 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 937 | S937T | Tca | Aca | 1 | 1 | B.1.1.326 | 0.001761 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
S | 937 | S937S | tcA | tcG | 1 | 1 | B.1.1.348 | 0.000796 |
S | 937 | S937S | tcA | tcC | 1 | 1 | B.1.1.372 | 0.000689 |
S | 937 | S937S | tcA | tcG | 1 | 1 | B.1.1.417 | 0.002703 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.1.519 | 0.00004 |
S | 937 | S937S | tcA | tcG | 1 | 1 | B.1.1.56 | 0.017857 |
S | 937 | S937M | TCA | ATG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 937 | S937V | TCA | GTG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 937 | S937F | tCA | tTC | 1 | 1 | B.1.1.7 | 0.000001 |
S | 937 | S937S | tcA | tcG | 1 | 1 | B.1.160 | 0.000031 |
S | 937 | S937S | tcA | tcG | 1 | 1 | B.1.177 | 0.000013 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.177.15 | 0.000631 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.177.17 | 0.000821 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.177.43 | 0.001477 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.177.46 | 0.000918 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.177.57 | 0.000281 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.177.60 | 0.000218 |
S | 937 | S937del1 | tcA | tc- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 937 | S937X | tCa | tAa | 1 | 1 | B.1.177.86 | 0.000183 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.177.87 | 0.000728 |
S | 937 | S937A | Tca | Gca | 1 | 1 | B.1.2 | 0.000009 |
S | 937 | S937P | Tca | Cca | 1 | 1 | B.1.2 | 0.000009 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.201 | 0.005682 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 937 | S937S | tcA | tcG | 1 | 1 | B.1.258.3 | 0.001675 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.336 | 0.002439 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.351.3 | 0.000876 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.36.17 | 0.000494 |
S | 937 | S937T | Tca | Aca | 1 | 1 | B.1.36.22 | 0.001208 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.369 | 0.000285 |
S | 937 | S937S | tcA | tcT | 1 | 1 | B.1.404 | 0.001302 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.427 | 0.00005 |
S | 937 | S937S | tcA | tcT | 1 | 1 | B.1.525 | 0.000113 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.525 | 0.000113 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.526 | 0.000024 |
S | 937 | S937S | tcA | tcG | 1 | 1 | B.1.526 | 0.000024 |
S | 937 | S937del1 | tcA | tc- | 1 | 1 | B.1.564 | 0.000426 |
S | 937 | S937S | tcA | tcG | 1 | 1 | B.1.609 | 0.000479 |
S | 937 | S937del1 | tcA | tc- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 937 | S937X | tCa | tAa | 1 | 1 | B.1.617.2 | 0.000004 |
S | 937 | S937del2 | tCA | t-- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.1.623 | 0.000536 |
S | 937 | S937del | TCA | --- | 1 | 1 | B.1.630 | 0.005236 |
S | 937 | S937X | tCa | tAa | 1 | 1 | B.31 | 0.003731 |
S | 937 | S937L | tCa | tTa | 1 | 1 | B.6 | 0.00091 |
S | 937 | S937S | tcA | tcC | 1 | 1 | B.6.6 | 0.000889 |
S | 937 | S937A | Tca | Gca | 1 | 1 | C.37 | 0.000116 |
S | 937 | S937A | Tca | Gca | 1 | 1 | D.2 | 0.000075 |
S | 937 | S937S | tcA | tcT | 1 | 1 | D.2 | 0.000075 |
S | 937 | S937L | tCa | tTa | 1 | 1 | P.1 | 0.000016 |
S | 937 | S937del | TCA | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 937 | S937L | tCa | tTa | 1 | 1 | P.1.14 | 0.000048 |
S | 937 | S937del1 | tcA | tc- | 1 | 1 | Q.2 | 0.000613 |
S | 937 | S937del | TCA | --- | 1 | 1 | Q.8 | 0.000165 |
S | 937 | S937T | Tca | Aca | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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