CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 937

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S937S937SsyntcAtcG152014210.93486824371-24373
S937S937SsyntcAtcT1520540.035526324371-24373
S937S937SsyntcAtcC1520450.029605324371-24373
S937S937AnonsynTcaGca237237124371-24373
S937S937LnonsyntCatTa2332310.99141624371-24373
S937S937LnonsynTCACTT23320.0085836924371-24373
S937S937TnonsynTcaAca132132124371-24373
S937S937deldelTCA---8383124371-24373
S937S937del1deltcAtc-1070.724371-24373
S937S937del1delTca-ca1030.324371-24373
S937S937XnonsyntCatAa760.85714324371-24373
S937S937XnonsyntCatGa710.14285724371-24373
S937S937PnonsynTcaCca66124371-24373
S937S937VnonsynTCaGTa320.66666724371-24373
S937S937VnonsynTCAGTG310.33333324371-24373
S937S937QnonsynTCaCAa22124371-24373
S937S937FnonsyntCAtTC11124371-24373
S937S937EnonsynTCaGAa11124371-24373
S937S937InonsynTCaATa11124371-24373
S937S937RnonsynTCaAGa11124371-24373
S937S937MnonsynTCAATG11124371-24373
S937S937del2deltCAt--11124371-24373

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S937S937StcAtcG14211520All0.000272
S937S937StcAtcT541520All0.00001
S937S937StcAtcC451520All0.000009
S937S937StcAtcG993993B.1.1.4200.998994
S937S937ATcaGca237237All0.000045
S937S937LtCatTa231233All0.000044
S937S937LTCACTT2233All0
S937S937ATcaGca201201AY.250.001209
S937S937StcAtcG131142B.1.1.70.000117
S937S937StcAtcT9142B.1.1.70.000008
S937S937StcAtcC2142B.1.1.70.000002
S937S937TTcaAca132132All0.000025
S937S937StcAtcG8588B.10.000779
S937S937StcAtcT288B.10.000018
S937S937StcAtcC188B.10.000009
S937S937delTCA---8383All0.000016
S937S937StcAtcG4758AY.40.000073
S937S937StcAtcT858AY.40.000012
S937S937StcAtcC358AY.40.000005
S937S937StcAtcG5253B.1.10.000943
S937S937StcAtcT153B.1.10.000018
S937S937delTCA---3636B.1.1.70.000032
S937S937TTcaAca2828AY.40.000044
S937S937StcAtcG2626AY.430.000115
S937S937TTcaAca2626B.1.617.20.000098
S937S937LtCatTa2323AY.40.000036
S937S937StcAtcC1921AY.39.10.000753
S937S937StcAtcG121AY.39.10.00004
S937S937StcAtcT121AY.39.10.00004
S937S937LtCatTa2020B.1.1.70.000018
S937S937StcAtcG1619AY.30.000159
S937S937StcAtcC319AY.30.00003
S937S937LtCatTa1717AY.1030.000106
S937S937TTcaAca1414AY.430.000062
S937S937LtCatTa1414B.1.1770.000184
S937S937StcAtcG712B.1.617.20.000026
S937S937StcAtcT412B.1.617.20.000015
S937S937StcAtcC112B.1.617.20.000004
S937S937StcAtcT711AY.440.000043
S937S937StcAtcC411AY.440.000024
S937S937LtCatTa1111B.1.617.20.000041
S937S937del1tcAtc-710All0.000001
S937S937del1Tca-ca310All0.000001
S937S937LtCatTa1010B.1.20.000088
S937S937LtCatTa99B.1.10.000163
S937S937LtCatTa88AY.1200.000297
S937S937LtCatTa88AY.430.000035
S937S937ATcaGca88AY.470.000249
S937S937delTCA---88B.1.1770.000105
S937S937XtCatAa67All0.000001
S937S937XtCatGa17All0
S937S937TTcaAca77AY.1070.003262
S937S937LtCatTa77AY.250.000042
S937S937TTcaAca77AY.540.000667
S937S937LtCatTa77B.10.000064
S937S937PTcaCca66All0.000001
S937S937StcAtcC66AY.470.000187
S937S937StcAtcG56AY.60.000206
S937S937StcAtcT16AY.60.000041
S937S937LtCatTa55AY.440.00003
S937S937LtCatTa55AY.9.20.000184
S937S937TTcaAca55B.1.1.70.000004
S937S937TTcaAca55B.1.20.000044
S937S937StcAtcG45B.1.4290.000094
S937S937StcAtcC15B.1.4290.000024
S937S937StcAtcG45B.1.5960.000349
S937S937StcAtcT15B.1.5960.000087
S937S937StcAtcG44AY.1030.000025
S937S937StcAtcG44AY.290.000063
S937S937LtCatTa44AY.390.000099
S937S937ATcaGca44B.10.000037
S937S937ATcaGca44B.1.1.70.000004
S937S937StcAtcT44B.1.2580.000266
S937S937LtCatTa44B.1.4290.000094
S937S937delTCA---44B.1.617.20.000015
S937S937LtCatTa44B.1.6370.000292
S937S937VTCaGTa23All0
S937S937VTCAGTG13All0
S937S937LtCatTa33AY.1170.000254
S937S937LtCatTa33AY.1180.000188
S937S937LtCatTa33AY.140.000264
S937S937LtCatTa33AY.290.000047
S937S937delTCA---33AY.40.000005
S937S937ATcaGca33AY.440.000018
S937S937StcAtcG33AY.50.000062
S937S937ATcaGca33AY.50.000062
S937S937XtCatAa23B.10.000018
S937S937XtCatGa13B.10.000009
S937S937TTcaAca33B.1.1.5190.000119
S937S937PTcaCca33B.1.1.70.000003
S937S937del1Tca-ca23B.1.1.70.000002
S937S937del1tcAtc-13B.1.1.70.000001
S937S937StcAtcG23B.1.3510.000059
S937S937StcAtcT13B.1.3510.00003
S937S937TTcaAca33B.1.5960.000261
S937S937StcAtcG33B.400.001093
S937S937StcAtcG33P.10.000047
S937S937TTcaAca33P.10.000047
S937S937QTCaCAa220.111111
S937S937LTCACTT220.111111
S937S937VTCaGTa220.111111
S937S937QTCaCAa22All0
S937S937StcAtcG22AT.10.010256
S937S937TTcaAca22AY.1020.000053
S937S937StcAtcG22AY.1110.000366
S937S937TTcaAca22AY.1180.000125
S937S937LtCatTa22AY.130.000322
S937S937TTcaAca22AY.230.000139
S937S937StcAtcC12AY.250.000006
S937S937StcAtcT12AY.250.000006
S937S937LtCatTa22AY.260.000057
S937S937StcAtcG22AY.270.000129
S937S937TTcaAca22AY.390.000049
S937S937StcAtcG22AY.4.20.000043
S937S937delTCA---22AY.4.50.000215
S937S937TTcaAca22AY.420.00008
S937S937LtCatTa22AY.470.000062
S937S937LtCatTa22AY.50.000041
S937S937StcAtcG22AY.5.40.000553
S937S937StcAtcT22AY.540.000191
S937S937LtCatTa22AY.60.000082
S937S937LtCatTa22AY.980.000158
S937S937TTcaAca22B.1.1.2740.010101
S937S937StcAtcT22B.1.1.3850.008929
S937S937StcAtcG22B.1.1.830.00542
S937S937LtCatTa22B.1.177.540.001213
S937S937delTCA---22B.1.177.70.00033
S937S937StcAtcT12B.1.177.810.000189
S937S937StcAtcG12B.1.177.810.000189
S937S937StcAtcT22B.1.2400.000431
S937S937TTcaAca22B.1.2430.000139
S937S937StcAtcC12B.1.258.170.000104
S937S937StcAtcG12B.1.258.170.000104
S937S937LtCatTa22B.1.3510.000059
S937S937ATcaGca22B.1.4290.000047
S937S937StcAtcT22B.1.5090.001732
S937S937delTCA---22B.1.5260.000047
S937S937ATcaGca22B.1.5640.000852
S937S937LtCatTa22B.1.5820.000981
S937S937ATcaGca22B.1.617.20.000008
S937S937LtCatTa22B.1.80.003945
S937S937TTcaAca22C.370.000232
S937S937ATcaGca110.055556
S937S937PTcaCca110.055556
S937S937delTCA---11A0.000387
S937S937TTcaAca11A.20.000662
S937S937RTCaAGa11All0
S937S937FtCAtTC11All0
S937S937ETCaGAa11All0
S937S937ITCaATa11All0
S937S937del2tCAt--11All0
S937S937MTCAATG11All0
S937S937StcAtcG11AY.1000.000046
S937S937LtCatTa11AY.1000.000046
S937S937LtCatTa11AY.1020.000027
S937S937TTcaAca11AY.1030.000006
S937S937LtCatTa11AY.1110.000183
S937S937LtCatTa11AY.1130.000142
S937S937LtCatTa11AY.116.10.000311
S937S937TTcaAca11AY.1170.000085
S937S937StcAtcT11AY.1190.000035
S937S937StcAtcC11AY.1200.000037
S937S937delTCA---11AY.1200.000037
S937S937TTcaAca11AY.200.000039
S937S937StcAtcT11AY.240.000431
S937S937TTcaAca11AY.250.000006
S937S937LtCatTa11AY.30.00001
S937S937ATcaGca11AY.30.00001
S937S937TTcaAca11AY.30.00001
S937S937LtCatTa11AY.3.10.000085
S937S937LtCatTa11AY.330.000067
S937S937LtCatTa11AY.340.000097
S937S937TTcaAca11AY.34.10.00051
S937S937LtCatTa11AY.370.000316
S937S937LtCatTa11AY.380.000499
S937S937StcAtcG11AY.380.000499
S937S937StcAtcG11AY.390.000025
S937S937LtCatTa11AY.39.10.00004
S937S937ATcaGca11AY.40.000002
S937S937del1Tca-ca11AY.40.000002
S937S937ETCaGAa11AY.4.20.000022
S937S937LtCatTa11AY.4.20.000022
S937S937ATcaGca11AY.4.2.10.000149
S937S937StcAtcG11AY.420.00004
S937S937ITCaATa11AY.430.000004
S937S937ATcaGca11AY.430.000004
S937S937delTCA---11AY.430.000004
S937S937PTcaCca11AY.430.000004
S937S937del1tcAtc-11AY.430.000004
S937S937delTCA---11AY.440.000006
S937S937TTcaAca11AY.440.000006
S937S937TTcaAca11AY.450.000122
S937S937delTCA---11AY.46.20.000635
S937S937LtCatTa11AY.46.30.000934
S937S937LtCatTa11AY.46.60.000072
S937S937TTcaAca11AY.46.60.000072
S937S937StcAtcG11AY.480.000465
S937S937LtCatTa11AY.500.000799
S937S937LtCatTa11AY.520.000814
S937S937LtCatTa11AY.540.000095
S937S937delTCA---11AY.60.000041
S937S937LtCatTa11AY.610.000105
S937S937del1tcAtc-11AY.660.00107
S937S937delTCA---11AY.670.000464
S937S937delTCA---11AY.810.001992
S937S937LtCatTa11AY.90.000068
S937S937LtCatTa11AY.9.10.000084
S937S937TTcaAca11AY.920.000287
S937S937LtCatTa11AY.98.10.000048
S937S937delTCA---11AY.990.001049
S937S937LtCatTa11B0.000128
S937S937delTCA---11B.10.000009
S937S937XtCatAa11B.1.10.000018
S937S937delTCA---11B.1.10.000018
S937S937RTCaAGa11B.1.10.000018
S937S937StcAtcG11B.1.1.1740.003378
S937S937LtCatTa11B.1.1.1890.001513
S937S937StcAtcG11B.1.1.2000.007463
S937S937delTCA---11B.1.1.2360.006897
S937S937delTCA---11B.1.1.250.000569
S937S937StcAtcG11B.1.1.2540.011236
S937S937LtCatTa11B.1.1.2570.009709
S937S937LtCatTa11B.1.1.280.000311
S937S937TTcaAca11B.1.1.2840.000107
S937S937StcAtcG11B.1.1.3070.002532
S937S937delTCA---11B.1.1.3110.000358
S937S937TTcaAca11B.1.1.3260.001761
S937S937delTCA---11B.1.1.330.000421
S937S937StcAtcG11B.1.1.3480.000796
S937S937StcAtcC11B.1.1.3720.000689
S937S937StcAtcG11B.1.1.4170.002703
S937S937LtCatTa11B.1.1.5190.00004
S937S937StcAtcG11B.1.1.560.017857
S937S937MTCAATG11B.1.1.70.000001
S937S937VTCAGTG11B.1.1.70.000001
S937S937FtCAtTC11B.1.1.70.000001
S937S937StcAtcG11B.1.1600.000031
S937S937StcAtcG11B.1.1770.000013
S937S937delTCA---11B.1.177.150.000631
S937S937delTCA---11B.1.177.160.000664
S937S937LtCatTa11B.1.177.170.000821
S937S937delTCA---11B.1.177.170.000821
S937S937delTCA---11B.1.177.210.000076
S937S937LtCatTa11B.1.177.430.001477
S937S937LtCatTa11B.1.177.460.000918
S937S937LtCatTa11B.1.177.570.000281
S937S937LtCatTa11B.1.177.600.000218
S937S937del1tcAtc-11B.1.177.830.001481
S937S937XtCatAa11B.1.177.860.000183
S937S937LtCatTa11B.1.177.870.000728
S937S937ATcaGca11B.1.20.000009
S937S937PTcaCca11B.1.20.000009
S937S937LtCatTa11B.1.2010.005682
S937S937delTCA---11B.1.2580.000067
S937S937StcAtcG11B.1.258.30.001675
S937S937LtCatTa11B.1.3360.002439
S937S937delTCA---11B.1.3510.00003
S937S937LtCatTa11B.1.351.30.000876
S937S937delTCA---11B.1.36.170.000494
S937S937TTcaAca11B.1.36.220.001208
S937S937LtCatTa11B.1.3690.000285
S937S937StcAtcT11B.1.4040.001302
S937S937LtCatTa11B.1.4270.00005
S937S937StcAtcT11B.1.5250.000113
S937S937delTCA---11B.1.5250.000113
S937S937LtCatTa11B.1.5260.000024
S937S937StcAtcG11B.1.5260.000024
S937S937del1tcAtc-11B.1.5640.000426
S937S937StcAtcG11B.1.6090.000479
S937S937del1tcAtc-11B.1.617.20.000004
S937S937XtCatAa11B.1.617.20.000004
S937S937del2tCAt--11B.1.617.20.000004
S937S937LtCatTa11B.1.6230.000536
S937S937delTCA---11B.1.6300.005236
S937S937XtCatAa11B.310.003731
S937S937LtCatTa11B.60.00091
S937S937StcAtcC11B.6.60.000889
S937S937ATcaGca11C.370.000116
S937S937ATcaGca11D.20.000075
S937S937StcAtcT11D.20.000075
S937S937LtCatTa11P.10.000016
S937S937delTCA---11P.1.130.000898
S937S937LtCatTa11P.1.140.000048
S937S937del1tcAtc-11Q.20.000613
S937S937delTCA---11Q.80.000165
S937S937TTcaAca11R.10.00009