CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 922

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S922L922FnonsynttGttT165313540.81911724326-24328
S922L922FnonsynttGttC16532990.18088324326-24328
S922L922LsynTtgCtg2151110.51627924326-24328
S922L922LsynttGttA2151010.46976724326-24328
S922L922LsynTtGCtT21530.013953524326-24328
S922L922deldelTTG---9999124326-24328
S922L922MnonsynTtgAtg9494124326-24328
S922L922SnonsyntTgtCg61590.96721324326-24328
S922L922SnonsyntTGtCA6120.032786924326-24328
S922L922WnonsyntTgtGg55124326-24328
S922L922XnonsyntTgtAg530.624326-24328
S922L922XnonsyntTGtGA510.224326-24328
S922L922XnonsyntTGtAA510.224326-24328
S922L922VnonsynTtgGtg33124326-24328
S922L922del1delttGtt-210.524326-24328
S922L922del1delTtG-tT210.524326-24328
S922L922InonsynTtGAtT11124326-24328

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S922L922FttGttT13541653All0.000259
S922L922FttGttC2991653All0.000057
S922L922FttGttT378466B.1.1.70.000338
S922L922FttGttC88466B.1.1.70.000079
S922L922LTtgCtg111215All0.000021
S922L922LttGttA101215All0.000019
S922L922LTtGCtT3215All0.000001
S922L922FttGttT196215AY.40.000305
S922L922FttGttC19215AY.40.00003
S922L922FttGttT109124AY.430.000483
S922L922FttGttC15124AY.430.000066
S922L922FttGttT100115B.1.617.20.000377
S922L922FttGttC15115B.1.617.20.000056
S922L922delTTG---9999All0.000019
S922L922MTtgAtg9494All0.000018
S922L922FttGttT5571AY.250.000331
S922L922FttGttC1671AY.250.000096
S922L922StTgtCg5961All0.000011
S922L922StTGtCA261All0
S922L922FttGttT4256AY.440.000256
S922L922FttGttC1456AY.440.000085
S922L922LttGttA5555B.1.1.2961
S922L922MTtgAtg5252AY.40.000081
S922L922FttGttC2850AY.200.001088
S922L922FttGttT2250AY.200.000855
S922L922delTTG---4040B.1.1.70.000036
S922L922MTtgAtg3232B.1.1.70.000029
S922L922FttGttT2731AY.1030.000168
S922L922FttGttC431AY.1030.000025
S922L922StTgtCg3131B.1.617.20.000117
S922L922FttGttT2727AY.30.000269
S922L922FttGttT2424AY.1110.004396
S922L922FttGttT1822B.10.000165
S922L922FttGttC422B.10.000037
S922L922FttGttC1320AY.390.000321
S922L922FttGttT720AY.390.000173
S922L922FttGttT1120AY.4.20.000239
S922L922FttGttC920AY.4.20.000195
S922L922LTtgCtg1515AY.1030.000093
S922L922LTtgCtg1515AY.260.000425
S922L922FttGttT1115AY.290.000174
S922L922FttGttC415AY.290.000063
S922L922FttGttC1414B.1.3710.015713
S922L922FttGttT1313AY.1190.000459
S922L922LTtgCtg713AY.40.000011
S922L922LttGttA613AY.40.000009
S922L922FttGttT1313AY.98.10.00063
S922L922FttGttT1013B.1.20.000088
S922L922FttGttC313B.1.20.000026
S922L922FttGttT1212AY.1020.000318
S922L922FttGttT911B.1.1.5190.000357
S922L922FttGttC211B.1.1.5190.000079
S922L922LTtgCtg910B.1.1.70.000008
S922L922LttGttA110B.1.1.70.000001
S922L922FttGttT99AY.39.10.000357
S922L922FttGttT99AY.470.00028
S922L922FttGttT99AY.680.002464
S922L922FttGttC69B.1.10.000109
S922L922FttGttT39B.1.10.000054
S922L922FttGttT89B.1.3510.000238
S922L922FttGttC19B.1.3510.00003
S922L922LTtgCtg59B.1.617.20.000019
S922L922LttGttA49B.1.617.20.000015
S922L922FttGttT99P.10.000142
S922L922LTtgCtg88AY.9.20.000294
S922L922FttGttT88B0.001022
S922L922FttGttT78B.1.4290.000165
S922L922FttGttC18B.1.4290.000024
S922L922LTtgCtg77B.1.1270.015385
S922L922FttGttT77B.1.2330.098592
S922L922FttGttT56AY.230.000349
S922L922FttGttC16AY.230.00007
S922L922delTTG---66AY.40.000009
S922L922LTtgCtg56AY.440.00003
S922L922LttGttA16AY.440.000006
S922L922LttGttA56B.10.000046
S922L922LTtgCtg16B.10.000009
S922L922LttGttA66B.1.1.3560.051282
S922L922FttGttT66B.1.1600.000187
S922L922FttGttT66B.1.1770.000079
S922L922WtTgtGg55All0.000001
S922L922XtTgtAg35All0.000001
S922L922XtTGtAA15All0
S922L922XtTGtGA15All0
S922L922FttGttT55AY.1140.001156
S922L922FttGttT35AY.1200.000112
S922L922FttGttC25AY.1200.000074
S922L922FttGttT55AY.140.00044
S922L922FttGttT55AY.270.000324
S922L922delTTG---55AY.4.50.000537
S922L922FttGttT55AY.420.000201
S922L922FttGttT55AY.46.60.000361
S922L922FttGttT55AY.99.20.000461
S922L922FttGttT55B.1.1.2070.00591
S922L922FttGttT55B.1.1.2160.004452
S922L922delTTG---55B.1.1770.000066
S922L922LttGttA35B.1.360.000438
S922L922LTtGCtT15B.1.360.000146
S922L922LTtgCtg15B.1.360.000146
S922L922FttGttT55B.1.5030.012438
S922L922FttGttT55B.1.5260.000118
S922L922FttGttT45B.1.5960.000349
S922L922FttGttC15B.1.5960.000087
S922L922FttGttT55B.1.6210.000443
S922L922LTtgCtg45P.10.000063
S922L922LttGttA15P.10.000016
S922L922FttGttT44A.210.01108
S922L922FttGttT44AY.1170.000338
S922L922FttGttT44AY.1210.000541
S922L922LTtgCtg24AY.430.000009
S922L922LttGttA24AY.430.000009
S922L922FttGttT44AY.460.000416
S922L922FttGttC34AY.750.000168
S922L922FttGttT14AY.750.000056
S922L922FttGttT34B.1.1.2140.000166
S922L922FttGttC14B.1.1.2140.000055
S922L922LTtgCtg44B.1.5750.001214
S922L922FttGttT44C.36.30.002269
S922L922FttGttT24P.1.140.000096
S922L922FttGttC24P.1.140.000096
S922L922FttGttT44R.10.00036
S922L922VTtgGtg33All0.000001
S922L922LttGttA23AY.1020.000053
S922L922LTtgCtg13AY.1020.000027
S922L922FttGttT33AY.1130.000427
S922L922LTtgCtg23AY.250.000012
S922L922LttGttA13AY.250.000006
S922L922FttGttC23AY.330.000134
S922L922FttGttT13AY.330.000067
S922L922FttGttT33AY.340.000291
S922L922FttGttT23AY.360.000296
S922L922FttGttC13AY.360.000148
S922L922StTgtCg33AY.40.000005
S922L922StTgtCg23AY.430.000009
S922L922StTGtCA13AY.430.000004
S922L922FttGttT23AY.610.00021
S922L922FttGttC13AY.610.000105
S922L922FttGttT33AY.740.000347
S922L922FttGttT33AY.90.000203
S922L922FttGttT33B.1.1.2630.004673
S922L922delTTG---33B.1.20.000026
S922L922FttGttT33B.1.220.003953
S922L922MTtgAtg33B.1.2340.000396
S922L922FttGttT33B.1.360.000438
S922L922LTtgCtg33B.1.5260.000071
S922L922FttGttT33B.1.5750.00091
S922L922LttGttA33B.1.5960.000261
S922L922FttGttT23B.1.617.10.000258
S922L922FttGttC13B.1.617.10.000129
S922L922delTTG---33B.1.617.20.000011
S922L922FttGttT33P.20.00056
S922L922delTTG---220.111111
S922L922LTtGCtT22A.10.000564
S922L922del1TtG-tT12All0
S922L922del1ttGtt-12All0
S922L922FttGttT12AY.116.10.000311
S922L922FttGttC12AY.116.10.000311
S922L922delTTG---22AY.1200.000074
S922L922LTtgCtg22AY.200.000078
S922L922FttGttT12AY.240.000431
S922L922FttGttC12AY.240.000431
S922L922StTgtCg22AY.250.000012
S922L922FttGttT12AY.260.000028
S922L922FttGttC12AY.260.000028
S922L922LTtgCtg22AY.30.00002
S922L922FttGttT22AY.350.000466
S922L922delTTG---22AY.440.000012
S922L922FttGttT12AY.60.000041
S922L922FttGttC12AY.60.000041
S922L922StTgtCg22AY.740.000231
S922L922LttGttA22AY.750.000112
S922L922WtTgtGg22AY.770.002255
S922L922XtTgtAg12B.10.000009
S922L922XtTGtAA12B.10.000009
S922L922LTtgCtg22B.1.1.1210.004854
S922L922FttGttC12B.1.1.3060.000438
S922L922FttGttT12B.1.1.3060.000438
S922L922LTtgCtg12B.1.1.5190.00004
S922L922LttGttA12B.1.1.5190.00004
S922L922StTgtCg22B.1.1.70.000002
S922L922LTtgCtg12B.1.1770.000013
S922L922LttGttA12B.1.1770.000013
S922L922FttGttC22B.1.177.580.002663
S922L922LttGttA12B.1.20.000009
S922L922LTtgCtg12B.1.20.000009
S922L922FttGttT22B.1.2210.000142
S922L922FttGttC22B.1.2290.019417
S922L922delTTG---22B.1.5260.000047
S922L922StTGtCA12B.1.6020.006536
S922L922StTgtCg12B.1.6020.006536
S922L922FttGttC22P.1.10.000635
S922L922LTtgCtg22P.20.000373
S922L922MTtgAtg110.055556
S922L922FttGttT110.055556
S922L922ITtGAtT110.055556
S922L922delTTG---11A0.000387
S922L922FttGttT11A.2.40.003367
S922L922FttGttT11A.250.018182
S922L922FttGttT11AB.10.008197
S922L922delTTG---11AD.20.000219
S922L922VTtgGtg11AD.20.000219
S922L922FttGttT11AE.80.000489
S922L922ITtGAtT11All0
S922L922FttGttT11AY.1000.000046
S922L922LTtgCtg11AY.1000.000046
S922L922FttGttT11AY.1010.00049
S922L922MTtgAtg11AY.1020.000027
S922L922StTgtCg11AY.1020.000027
S922L922FttGttC11AY.1090.00074
S922L922LTtgCtg11AY.120.000316
S922L922LttGttA11AY.130.000161
S922L922FttGttC11AY.160.00038
S922L922LTtgCtg11AY.230.00007
S922L922StTgtCg11AY.290.000016
S922L922FttGttC11AY.29.10.000221
S922L922delTTG---11AY.330.000067
S922L922StTgtCg11AY.360.000148
S922L922del1TtG-tT11AY.380.000499
S922L922FttGttC11AY.380.000499
S922L922StTgtCg11AY.39.20.001541
S922L922delTTG---11AY.430.000004
S922L922StTgtCg11AY.440.000006
S922L922FttGttT11AY.450.000122
S922L922StTgtCg11AY.460.000104
S922L922FttGttT11AY.46.10.001027
S922L922delTTG---11AY.46.20.000635
S922L922FttGttT11AY.46.30.000934
S922L922FttGttT11AY.46.40.000165
S922L922FttGttT11AY.50.000021
S922L922StTgtCg11AY.5.10.003759
S922L922FttGttT11AY.5.40.000277
S922L922FttGttT11AY.550.000917
S922L922StTgtCg11AY.550.000917
S922L922delTTG---11AY.60.000041
S922L922del1ttGtt-11AY.610.000105
S922L922FttGttC11AY.620.000436
S922L922delTTG---11AY.670.000464
S922L922FttGttT11AY.690.000187
S922L922FttGttT11AY.7.10.000113
S922L922FttGttT11AY.700.000209
S922L922StTgtCg11AY.710.000475
S922L922FttGttT11AY.790.001211
S922L922FttGttT11AY.840.000437
S922L922StTgtCg11AY.9.20.000037
S922L922FttGttT11AY.9.20.000037
S922L922FttGttT11AY.920.000287
S922L922FttGttT11AY.970.001701
S922L922FttGttT11AY.980.000079
S922L922delTTG---11AY.990.001049
S922L922delTTG---11B.10.000009
S922L922WtTgtGg11B.10.000009
S922L922StTgtCg11B.10.000009
S922L922delTTG---11B.1.10.000018
S922L922MTtgAtg11B.1.10.000018
S922L922FttGttC11B.1.1.1480.008772
S922L922FttGttT11B.1.1.1570.000913
S922L922LTtgCtg11B.1.1.2140.000055
S922L922delTTG---11B.1.1.2360.006897
S922L922FttGttT11B.1.1.3070.002532
S922L922delTTG---11B.1.1.3110.000358
S922L922FttGttT11B.1.1.3180.000302
S922L922FttGttT11B.1.1.3720.000689
S922L922LttGttA11B.1.1.390.00051
S922L922delTTG---11B.1.1.390.00051
S922L922FttGttT11B.1.1.4400.011765
S922L922FttGttT11B.1.1.4640.001473
S922L922VTtgGtg11B.1.1.70.000001
S922L922XtTgtAg11B.1.1180.006711
S922L922FttGttC11B.1.1470.000756
S922L922LTtgCtg11B.1.1600.000031
S922L922StTgtCg11B.1.160.120.00641
S922L922delTTG---11B.1.177.100.000878
S922L922delTTG---11B.1.177.110.001698
S922L922delTTG---11B.1.177.150.000631
S922L922delTTG---11B.1.177.160.000664
S922L922delTTG---11B.1.177.170.000821
S922L922MTtgAtg11B.1.177.180.00116
S922L922delTTG---11B.1.177.210.000076
S922L922FttGttT11B.1.177.320.00135
S922L922delTTG---11B.1.177.540.000606
S922L922FttGttT11B.1.177.560.000668
S922L922delTTG---11B.1.177.560.000668
S922L922delTTG---11B.1.177.600.000218
S922L922FttGttC11B.1.177.650.000665
S922L922FttGttC11B.1.177.70.000165
S922L922FttGttC11B.1.177.780.009709
S922L922delTTG---11B.1.177.810.000189
S922L922FttGttT11B.1.1890.004292
S922L922XtTgtAg11B.1.20.000009
S922L922StTgtCg11B.1.20.000009
S922L922LTtgCtg11B.1.2060.000816
S922L922FttGttT11B.1.2100.002132
S922L922FttGttT11B.1.2180.005155
S922L922StTgtCg11B.1.2210.000071
S922L922FttGttT11B.1.2340.000132
S922L922WtTgtGg11B.1.2400.000216
S922L922XtTGtGA11B.1.2400.000216
S922L922FttGttT11B.1.2400.000216
S922L922LttGttA11B.1.2400.000216
S922L922FttGttT11B.1.2430.00007
S922L922StTgtCg11B.1.2580.000067
S922L922delTTG---11B.1.2580.000067
S922L922FttGttT11B.1.3010.005917
S922L922FttGttC11B.1.3330.010526
S922L922FttGttC11B.1.3490.000715
S922L922delTTG---11B.1.360.000146
S922L922LttGttA11B.1.36.360.000602
S922L922FttGttT11B.1.3890.001002
S922L922FttGttT11B.1.3990.001934
S922L922FttGttT11B.1.4260.001009
S922L922LttGttA11B.1.4290.000024
S922L922FttGttC11B.1.4460.02
S922L922LTtgCtg11B.1.5160.001957
S922L922VTtgGtg11B.1.5440.006024
S922L922delTTG---11B.1.5770.000687
S922L922FttGttT11B.1.5820.000491
S922L922LttGttA11B.1.6020.006536
S922L922FttGttT11B.1.6090.000479
S922L922MTtgAtg11B.1.617.20.000004
S922L922WtTgtGg11B.1.617.20.000004
S922L922FttGttT11B.1.6280.000352
S922L922delTTG---11B.1.6300.005236
S922L922MTtgAtg11B.1.6370.000073
S922L922LTtgCtg11B.1.6370.000073
S922L922FttGttT11B.1.90.006173
S922L922MTtgAtg11B.300.014706
S922L922FttGttT11B.400.000364
S922L922FttGttC11B.580.010204
S922L922FttGttT11B.60.00091
S922L922FttGttC11C.350.000774
S922L922FttGttT11C.370.000116
S922L922FttGttC11C.80.004464
S922L922LTtgCtg11D.20.000075
S922L922FttGttT11D.20.000075
S922L922delTTG---11D.20.000075
S922L922delTTG---11P.1.130.000898
S922L922LTtgCtg11P.1.150.000232
S922L922StTgtCg11Q.20.000613
S922L922FttGttC11Q.30.000145
S922L922LTtgCtg11R.10.00009