CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 922 | L922F | nonsyn | ttG | ttT | 1653 | 1354 | 0.819117 | 24326-24328 | |
S | 922 | L922F | nonsyn | ttG | ttC | 1653 | 299 | 0.180883 | 24326-24328 | |
S | 922 | L922L | syn | Ttg | Ctg | 215 | 111 | 0.516279 | 24326-24328 | |
S | 922 | L922L | syn | ttG | ttA | 215 | 101 | 0.469767 | 24326-24328 | |
S | 922 | L922L | syn | TtG | CtT | 215 | 3 | 0.0139535 | 24326-24328 | |
S | 922 | L922del | del | TTG | --- | 99 | 99 | 1 | 24326-24328 | |
S | 922 | L922M | nonsyn | Ttg | Atg | 94 | 94 | 1 | 24326-24328 | |
S | 922 | L922S | nonsyn | tTg | tCg | 61 | 59 | 0.967213 | 24326-24328 | |
S | 922 | L922S | nonsyn | tTG | tCA | 61 | 2 | 0.0327869 | 24326-24328 | |
S | 922 | L922W | nonsyn | tTg | tGg | 5 | 5 | 1 | 24326-24328 | |
S | 922 | L922X | nonsyn | tTg | tAg | 5 | 3 | 0.6 | 24326-24328 | |
S | 922 | L922X | nonsyn | tTG | tGA | 5 | 1 | 0.2 | 24326-24328 | |
S | 922 | L922X | nonsyn | tTG | tAA | 5 | 1 | 0.2 | 24326-24328 | |
S | 922 | L922V | nonsyn | Ttg | Gtg | 3 | 3 | 1 | 24326-24328 | |
S | 922 | L922del1 | del | ttG | tt- | 2 | 1 | 0.5 | 24326-24328 | |
S | 922 | L922del1 | del | TtG | -tT | 2 | 1 | 0.5 | 24326-24328 | |
S | 922 | L922I | nonsyn | TtG | AtT | 1 | 1 | 1 | 24326-24328 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 922 | L922F | ttG | ttT | 1354 | 1653 | All | 0.000259 |
S | 922 | L922F | ttG | ttC | 299 | 1653 | All | 0.000057 |
S | 922 | L922F | ttG | ttT | 378 | 466 | B.1.1.7 | 0.000338 |
S | 922 | L922F | ttG | ttC | 88 | 466 | B.1.1.7 | 0.000079 |
S | 922 | L922L | Ttg | Ctg | 111 | 215 | All | 0.000021 |
S | 922 | L922L | ttG | ttA | 101 | 215 | All | 0.000019 |
S | 922 | L922L | TtG | CtT | 3 | 215 | All | 0.000001 |
S | 922 | L922F | ttG | ttT | 196 | 215 | AY.4 | 0.000305 |
S | 922 | L922F | ttG | ttC | 19 | 215 | AY.4 | 0.00003 |
S | 922 | L922F | ttG | ttT | 109 | 124 | AY.43 | 0.000483 |
S | 922 | L922F | ttG | ttC | 15 | 124 | AY.43 | 0.000066 |
S | 922 | L922F | ttG | ttT | 100 | 115 | B.1.617.2 | 0.000377 |
S | 922 | L922F | ttG | ttC | 15 | 115 | B.1.617.2 | 0.000056 |
S | 922 | L922del | TTG | --- | 99 | 99 | All | 0.000019 |
S | 922 | L922M | Ttg | Atg | 94 | 94 | All | 0.000018 |
S | 922 | L922F | ttG | ttT | 55 | 71 | AY.25 | 0.000331 |
S | 922 | L922F | ttG | ttC | 16 | 71 | AY.25 | 0.000096 |
S | 922 | L922S | tTg | tCg | 59 | 61 | All | 0.000011 |
S | 922 | L922S | tTG | tCA | 2 | 61 | All | 0 |
S | 922 | L922F | ttG | ttT | 42 | 56 | AY.44 | 0.000256 |
S | 922 | L922F | ttG | ttC | 14 | 56 | AY.44 | 0.000085 |
S | 922 | L922L | ttG | ttA | 55 | 55 | B.1.1.296 | 1 |
S | 922 | L922M | Ttg | Atg | 52 | 52 | AY.4 | 0.000081 |
S | 922 | L922F | ttG | ttC | 28 | 50 | AY.20 | 0.001088 |
S | 922 | L922F | ttG | ttT | 22 | 50 | AY.20 | 0.000855 |
S | 922 | L922del | TTG | --- | 40 | 40 | B.1.1.7 | 0.000036 |
S | 922 | L922M | Ttg | Atg | 32 | 32 | B.1.1.7 | 0.000029 |
S | 922 | L922F | ttG | ttT | 27 | 31 | AY.103 | 0.000168 |
S | 922 | L922F | ttG | ttC | 4 | 31 | AY.103 | 0.000025 |
S | 922 | L922S | tTg | tCg | 31 | 31 | B.1.617.2 | 0.000117 |
S | 922 | L922F | ttG | ttT | 27 | 27 | AY.3 | 0.000269 |
S | 922 | L922F | ttG | ttT | 24 | 24 | AY.111 | 0.004396 |
S | 922 | L922F | ttG | ttT | 18 | 22 | B.1 | 0.000165 |
S | 922 | L922F | ttG | ttC | 4 | 22 | B.1 | 0.000037 |
S | 922 | L922F | ttG | ttC | 13 | 20 | AY.39 | 0.000321 |
S | 922 | L922F | ttG | ttT | 7 | 20 | AY.39 | 0.000173 |
S | 922 | L922F | ttG | ttT | 11 | 20 | AY.4.2 | 0.000239 |
S | 922 | L922F | ttG | ttC | 9 | 20 | AY.4.2 | 0.000195 |
S | 922 | L922L | Ttg | Ctg | 15 | 15 | AY.103 | 0.000093 |
S | 922 | L922L | Ttg | Ctg | 15 | 15 | AY.26 | 0.000425 |
S | 922 | L922F | ttG | ttT | 11 | 15 | AY.29 | 0.000174 |
S | 922 | L922F | ttG | ttC | 4 | 15 | AY.29 | 0.000063 |
S | 922 | L922F | ttG | ttC | 14 | 14 | B.1.371 | 0.015713 |
S | 922 | L922F | ttG | ttT | 13 | 13 | AY.119 | 0.000459 |
S | 922 | L922L | Ttg | Ctg | 7 | 13 | AY.4 | 0.000011 |
S | 922 | L922L | ttG | ttA | 6 | 13 | AY.4 | 0.000009 |
S | 922 | L922F | ttG | ttT | 13 | 13 | AY.98.1 | 0.00063 |
S | 922 | L922F | ttG | ttT | 10 | 13 | B.1.2 | 0.000088 |
S | 922 | L922F | ttG | ttC | 3 | 13 | B.1.2 | 0.000026 |
S | 922 | L922F | ttG | ttT | 12 | 12 | AY.102 | 0.000318 |
S | 922 | L922F | ttG | ttT | 9 | 11 | B.1.1.519 | 0.000357 |
S | 922 | L922F | ttG | ttC | 2 | 11 | B.1.1.519 | 0.000079 |
S | 922 | L922L | Ttg | Ctg | 9 | 10 | B.1.1.7 | 0.000008 |
S | 922 | L922L | ttG | ttA | 1 | 10 | B.1.1.7 | 0.000001 |
S | 922 | L922F | ttG | ttT | 9 | 9 | AY.39.1 | 0.000357 |
S | 922 | L922F | ttG | ttT | 9 | 9 | AY.47 | 0.00028 |
S | 922 | L922F | ttG | ttT | 9 | 9 | AY.68 | 0.002464 |
S | 922 | L922F | ttG | ttC | 6 | 9 | B.1.1 | 0.000109 |
S | 922 | L922F | ttG | ttT | 3 | 9 | B.1.1 | 0.000054 |
S | 922 | L922F | ttG | ttT | 8 | 9 | B.1.351 | 0.000238 |
S | 922 | L922F | ttG | ttC | 1 | 9 | B.1.351 | 0.00003 |
S | 922 | L922L | Ttg | Ctg | 5 | 9 | B.1.617.2 | 0.000019 |
S | 922 | L922L | ttG | ttA | 4 | 9 | B.1.617.2 | 0.000015 |
S | 922 | L922F | ttG | ttT | 9 | 9 | P.1 | 0.000142 |
S | 922 | L922L | Ttg | Ctg | 8 | 8 | AY.9.2 | 0.000294 |
S | 922 | L922F | ttG | ttT | 8 | 8 | B | 0.001022 |
S | 922 | L922F | ttG | ttT | 7 | 8 | B.1.429 | 0.000165 |
S | 922 | L922F | ttG | ttC | 1 | 8 | B.1.429 | 0.000024 |
S | 922 | L922L | Ttg | Ctg | 7 | 7 | B.1.127 | 0.015385 |
S | 922 | L922F | ttG | ttT | 7 | 7 | B.1.233 | 0.098592 |
S | 922 | L922F | ttG | ttT | 5 | 6 | AY.23 | 0.000349 |
S | 922 | L922F | ttG | ttC | 1 | 6 | AY.23 | 0.00007 |
S | 922 | L922del | TTG | --- | 6 | 6 | AY.4 | 0.000009 |
S | 922 | L922L | Ttg | Ctg | 5 | 6 | AY.44 | 0.00003 |
S | 922 | L922L | ttG | ttA | 1 | 6 | AY.44 | 0.000006 |
S | 922 | L922L | ttG | ttA | 5 | 6 | B.1 | 0.000046 |
S | 922 | L922L | Ttg | Ctg | 1 | 6 | B.1 | 0.000009 |
S | 922 | L922L | ttG | ttA | 6 | 6 | B.1.1.356 | 0.051282 |
S | 922 | L922F | ttG | ttT | 6 | 6 | B.1.160 | 0.000187 |
S | 922 | L922F | ttG | ttT | 6 | 6 | B.1.177 | 0.000079 |
S | 922 | L922W | tTg | tGg | 5 | 5 | All | 0.000001 |
S | 922 | L922X | tTg | tAg | 3 | 5 | All | 0.000001 |
S | 922 | L922X | tTG | tAA | 1 | 5 | All | 0 |
S | 922 | L922X | tTG | tGA | 1 | 5 | All | 0 |
S | 922 | L922F | ttG | ttT | 5 | 5 | AY.114 | 0.001156 |
S | 922 | L922F | ttG | ttT | 3 | 5 | AY.120 | 0.000112 |
S | 922 | L922F | ttG | ttC | 2 | 5 | AY.120 | 0.000074 |
S | 922 | L922F | ttG | ttT | 5 | 5 | AY.14 | 0.00044 |
S | 922 | L922F | ttG | ttT | 5 | 5 | AY.27 | 0.000324 |
S | 922 | L922del | TTG | --- | 5 | 5 | AY.4.5 | 0.000537 |
S | 922 | L922F | ttG | ttT | 5 | 5 | AY.42 | 0.000201 |
S | 922 | L922F | ttG | ttT | 5 | 5 | AY.46.6 | 0.000361 |
S | 922 | L922F | ttG | ttT | 5 | 5 | AY.99.2 | 0.000461 |
S | 922 | L922F | ttG | ttT | 5 | 5 | B.1.1.207 | 0.00591 |
S | 922 | L922F | ttG | ttT | 5 | 5 | B.1.1.216 | 0.004452 |
S | 922 | L922del | TTG | --- | 5 | 5 | B.1.177 | 0.000066 |
S | 922 | L922L | ttG | ttA | 3 | 5 | B.1.36 | 0.000438 |
S | 922 | L922L | TtG | CtT | 1 | 5 | B.1.36 | 0.000146 |
S | 922 | L922L | Ttg | Ctg | 1 | 5 | B.1.36 | 0.000146 |
S | 922 | L922F | ttG | ttT | 5 | 5 | B.1.503 | 0.012438 |
S | 922 | L922F | ttG | ttT | 5 | 5 | B.1.526 | 0.000118 |
S | 922 | L922F | ttG | ttT | 4 | 5 | B.1.596 | 0.000349 |
S | 922 | L922F | ttG | ttC | 1 | 5 | B.1.596 | 0.000087 |
S | 922 | L922F | ttG | ttT | 5 | 5 | B.1.621 | 0.000443 |
S | 922 | L922L | Ttg | Ctg | 4 | 5 | P.1 | 0.000063 |
S | 922 | L922L | ttG | ttA | 1 | 5 | P.1 | 0.000016 |
S | 922 | L922F | ttG | ttT | 4 | 4 | A.21 | 0.01108 |
S | 922 | L922F | ttG | ttT | 4 | 4 | AY.117 | 0.000338 |
S | 922 | L922F | ttG | ttT | 4 | 4 | AY.121 | 0.000541 |
S | 922 | L922L | Ttg | Ctg | 2 | 4 | AY.43 | 0.000009 |
S | 922 | L922L | ttG | ttA | 2 | 4 | AY.43 | 0.000009 |
S | 922 | L922F | ttG | ttT | 4 | 4 | AY.46 | 0.000416 |
S | 922 | L922F | ttG | ttC | 3 | 4 | AY.75 | 0.000168 |
S | 922 | L922F | ttG | ttT | 1 | 4 | AY.75 | 0.000056 |
S | 922 | L922F | ttG | ttT | 3 | 4 | B.1.1.214 | 0.000166 |
S | 922 | L922F | ttG | ttC | 1 | 4 | B.1.1.214 | 0.000055 |
S | 922 | L922L | Ttg | Ctg | 4 | 4 | B.1.575 | 0.001214 |
S | 922 | L922F | ttG | ttT | 4 | 4 | C.36.3 | 0.002269 |
S | 922 | L922F | ttG | ttT | 2 | 4 | P.1.14 | 0.000096 |
S | 922 | L922F | ttG | ttC | 2 | 4 | P.1.14 | 0.000096 |
S | 922 | L922F | ttG | ttT | 4 | 4 | R.1 | 0.00036 |
S | 922 | L922V | Ttg | Gtg | 3 | 3 | All | 0.000001 |
S | 922 | L922L | ttG | ttA | 2 | 3 | AY.102 | 0.000053 |
S | 922 | L922L | Ttg | Ctg | 1 | 3 | AY.102 | 0.000027 |
S | 922 | L922F | ttG | ttT | 3 | 3 | AY.113 | 0.000427 |
S | 922 | L922L | Ttg | Ctg | 2 | 3 | AY.25 | 0.000012 |
S | 922 | L922L | ttG | ttA | 1 | 3 | AY.25 | 0.000006 |
S | 922 | L922F | ttG | ttC | 2 | 3 | AY.33 | 0.000134 |
S | 922 | L922F | ttG | ttT | 1 | 3 | AY.33 | 0.000067 |
S | 922 | L922F | ttG | ttT | 3 | 3 | AY.34 | 0.000291 |
S | 922 | L922F | ttG | ttT | 2 | 3 | AY.36 | 0.000296 |
S | 922 | L922F | ttG | ttC | 1 | 3 | AY.36 | 0.000148 |
S | 922 | L922S | tTg | tCg | 3 | 3 | AY.4 | 0.000005 |
S | 922 | L922S | tTg | tCg | 2 | 3 | AY.43 | 0.000009 |
S | 922 | L922S | tTG | tCA | 1 | 3 | AY.43 | 0.000004 |
S | 922 | L922F | ttG | ttT | 2 | 3 | AY.61 | 0.00021 |
S | 922 | L922F | ttG | ttC | 1 | 3 | AY.61 | 0.000105 |
S | 922 | L922F | ttG | ttT | 3 | 3 | AY.74 | 0.000347 |
S | 922 | L922F | ttG | ttT | 3 | 3 | AY.9 | 0.000203 |
S | 922 | L922F | ttG | ttT | 3 | 3 | B.1.1.263 | 0.004673 |
S | 922 | L922del | TTG | --- | 3 | 3 | B.1.2 | 0.000026 |
S | 922 | L922F | ttG | ttT | 3 | 3 | B.1.22 | 0.003953 |
S | 922 | L922M | Ttg | Atg | 3 | 3 | B.1.234 | 0.000396 |
S | 922 | L922F | ttG | ttT | 3 | 3 | B.1.36 | 0.000438 |
S | 922 | L922L | Ttg | Ctg | 3 | 3 | B.1.526 | 0.000071 |
S | 922 | L922F | ttG | ttT | 3 | 3 | B.1.575 | 0.00091 |
S | 922 | L922L | ttG | ttA | 3 | 3 | B.1.596 | 0.000261 |
S | 922 | L922F | ttG | ttT | 2 | 3 | B.1.617.1 | 0.000258 |
S | 922 | L922F | ttG | ttC | 1 | 3 | B.1.617.1 | 0.000129 |
S | 922 | L922del | TTG | --- | 3 | 3 | B.1.617.2 | 0.000011 |
S | 922 | L922F | ttG | ttT | 3 | 3 | P.2 | 0.00056 |
S | 922 | L922del | TTG | --- | 2 | 2 | 0.111111 | |
S | 922 | L922L | TtG | CtT | 2 | 2 | A.1 | 0.000564 |
S | 922 | L922del1 | TtG | -tT | 1 | 2 | All | 0 |
S | 922 | L922del1 | ttG | tt- | 1 | 2 | All | 0 |
S | 922 | L922F | ttG | ttT | 1 | 2 | AY.116.1 | 0.000311 |
S | 922 | L922F | ttG | ttC | 1 | 2 | AY.116.1 | 0.000311 |
S | 922 | L922del | TTG | --- | 2 | 2 | AY.120 | 0.000074 |
S | 922 | L922L | Ttg | Ctg | 2 | 2 | AY.20 | 0.000078 |
S | 922 | L922F | ttG | ttT | 1 | 2 | AY.24 | 0.000431 |
S | 922 | L922F | ttG | ttC | 1 | 2 | AY.24 | 0.000431 |
S | 922 | L922S | tTg | tCg | 2 | 2 | AY.25 | 0.000012 |
S | 922 | L922F | ttG | ttT | 1 | 2 | AY.26 | 0.000028 |
S | 922 | L922F | ttG | ttC | 1 | 2 | AY.26 | 0.000028 |
S | 922 | L922L | Ttg | Ctg | 2 | 2 | AY.3 | 0.00002 |
S | 922 | L922F | ttG | ttT | 2 | 2 | AY.35 | 0.000466 |
S | 922 | L922del | TTG | --- | 2 | 2 | AY.44 | 0.000012 |
S | 922 | L922F | ttG | ttT | 1 | 2 | AY.6 | 0.000041 |
S | 922 | L922F | ttG | ttC | 1 | 2 | AY.6 | 0.000041 |
S | 922 | L922S | tTg | tCg | 2 | 2 | AY.74 | 0.000231 |
S | 922 | L922L | ttG | ttA | 2 | 2 | AY.75 | 0.000112 |
S | 922 | L922W | tTg | tGg | 2 | 2 | AY.77 | 0.002255 |
S | 922 | L922X | tTg | tAg | 1 | 2 | B.1 | 0.000009 |
S | 922 | L922X | tTG | tAA | 1 | 2 | B.1 | 0.000009 |
S | 922 | L922L | Ttg | Ctg | 2 | 2 | B.1.1.121 | 0.004854 |
S | 922 | L922F | ttG | ttC | 1 | 2 | B.1.1.306 | 0.000438 |
S | 922 | L922F | ttG | ttT | 1 | 2 | B.1.1.306 | 0.000438 |
S | 922 | L922L | Ttg | Ctg | 1 | 2 | B.1.1.519 | 0.00004 |
S | 922 | L922L | ttG | ttA | 1 | 2 | B.1.1.519 | 0.00004 |
S | 922 | L922S | tTg | tCg | 2 | 2 | B.1.1.7 | 0.000002 |
S | 922 | L922L | Ttg | Ctg | 1 | 2 | B.1.177 | 0.000013 |
S | 922 | L922L | ttG | ttA | 1 | 2 | B.1.177 | 0.000013 |
S | 922 | L922F | ttG | ttC | 2 | 2 | B.1.177.58 | 0.002663 |
S | 922 | L922L | ttG | ttA | 1 | 2 | B.1.2 | 0.000009 |
S | 922 | L922L | Ttg | Ctg | 1 | 2 | B.1.2 | 0.000009 |
S | 922 | L922F | ttG | ttT | 2 | 2 | B.1.221 | 0.000142 |
S | 922 | L922F | ttG | ttC | 2 | 2 | B.1.229 | 0.019417 |
S | 922 | L922del | TTG | --- | 2 | 2 | B.1.526 | 0.000047 |
S | 922 | L922S | tTG | tCA | 1 | 2 | B.1.602 | 0.006536 |
S | 922 | L922S | tTg | tCg | 1 | 2 | B.1.602 | 0.006536 |
S | 922 | L922F | ttG | ttC | 2 | 2 | P.1.1 | 0.000635 |
S | 922 | L922L | Ttg | Ctg | 2 | 2 | P.2 | 0.000373 |
S | 922 | L922M | Ttg | Atg | 1 | 1 | 0.055556 | |
S | 922 | L922F | ttG | ttT | 1 | 1 | 0.055556 | |
S | 922 | L922I | TtG | AtT | 1 | 1 | 0.055556 | |
S | 922 | L922del | TTG | --- | 1 | 1 | A | 0.000387 |
S | 922 | L922F | ttG | ttT | 1 | 1 | A.2.4 | 0.003367 |
S | 922 | L922F | ttG | ttT | 1 | 1 | A.25 | 0.018182 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AB.1 | 0.008197 |
S | 922 | L922del | TTG | --- | 1 | 1 | AD.2 | 0.000219 |
S | 922 | L922V | Ttg | Gtg | 1 | 1 | AD.2 | 0.000219 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AE.8 | 0.000489 |
S | 922 | L922I | TtG | AtT | 1 | 1 | All | 0 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.100 | 0.000046 |
S | 922 | L922L | Ttg | Ctg | 1 | 1 | AY.100 | 0.000046 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.101 | 0.00049 |
S | 922 | L922M | Ttg | Atg | 1 | 1 | AY.102 | 0.000027 |
S | 922 | L922S | tTg | tCg | 1 | 1 | AY.102 | 0.000027 |
S | 922 | L922F | ttG | ttC | 1 | 1 | AY.109 | 0.00074 |
S | 922 | L922L | Ttg | Ctg | 1 | 1 | AY.12 | 0.000316 |
S | 922 | L922L | ttG | ttA | 1 | 1 | AY.13 | 0.000161 |
S | 922 | L922F | ttG | ttC | 1 | 1 | AY.16 | 0.00038 |
S | 922 | L922L | Ttg | Ctg | 1 | 1 | AY.23 | 0.00007 |
S | 922 | L922S | tTg | tCg | 1 | 1 | AY.29 | 0.000016 |
S | 922 | L922F | ttG | ttC | 1 | 1 | AY.29.1 | 0.000221 |
S | 922 | L922del | TTG | --- | 1 | 1 | AY.33 | 0.000067 |
S | 922 | L922S | tTg | tCg | 1 | 1 | AY.36 | 0.000148 |
S | 922 | L922del1 | TtG | -tT | 1 | 1 | AY.38 | 0.000499 |
S | 922 | L922F | ttG | ttC | 1 | 1 | AY.38 | 0.000499 |
S | 922 | L922S | tTg | tCg | 1 | 1 | AY.39.2 | 0.001541 |
S | 922 | L922del | TTG | --- | 1 | 1 | AY.43 | 0.000004 |
S | 922 | L922S | tTg | tCg | 1 | 1 | AY.44 | 0.000006 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.45 | 0.000122 |
S | 922 | L922S | tTg | tCg | 1 | 1 | AY.46 | 0.000104 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.46.1 | 0.001027 |
S | 922 | L922del | TTG | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.46.3 | 0.000934 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.46.4 | 0.000165 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.5 | 0.000021 |
S | 922 | L922S | tTg | tCg | 1 | 1 | AY.5.1 | 0.003759 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.5.4 | 0.000277 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.55 | 0.000917 |
S | 922 | L922S | tTg | tCg | 1 | 1 | AY.55 | 0.000917 |
S | 922 | L922del | TTG | --- | 1 | 1 | AY.6 | 0.000041 |
S | 922 | L922del1 | ttG | tt- | 1 | 1 | AY.61 | 0.000105 |
S | 922 | L922F | ttG | ttC | 1 | 1 | AY.62 | 0.000436 |
S | 922 | L922del | TTG | --- | 1 | 1 | AY.67 | 0.000464 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.69 | 0.000187 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.7.1 | 0.000113 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.70 | 0.000209 |
S | 922 | L922S | tTg | tCg | 1 | 1 | AY.71 | 0.000475 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.79 | 0.001211 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.84 | 0.000437 |
S | 922 | L922S | tTg | tCg | 1 | 1 | AY.9.2 | 0.000037 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.9.2 | 0.000037 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.92 | 0.000287 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.97 | 0.001701 |
S | 922 | L922F | ttG | ttT | 1 | 1 | AY.98 | 0.000079 |
S | 922 | L922del | TTG | --- | 1 | 1 | AY.99 | 0.001049 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1 | 0.000009 |
S | 922 | L922W | tTg | tGg | 1 | 1 | B.1 | 0.000009 |
S | 922 | L922S | tTg | tCg | 1 | 1 | B.1 | 0.000009 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.1 | 0.000018 |
S | 922 | L922M | Ttg | Atg | 1 | 1 | B.1.1 | 0.000018 |
S | 922 | L922F | ttG | ttC | 1 | 1 | B.1.1.148 | 0.008772 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.1.157 | 0.000913 |
S | 922 | L922L | Ttg | Ctg | 1 | 1 | B.1.1.214 | 0.000055 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.1.307 | 0.002532 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.1.318 | 0.000302 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.1.372 | 0.000689 |
S | 922 | L922L | ttG | ttA | 1 | 1 | B.1.1.39 | 0.00051 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.1.39 | 0.00051 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.1.440 | 0.011765 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.1.464 | 0.001473 |
S | 922 | L922V | Ttg | Gtg | 1 | 1 | B.1.1.7 | 0.000001 |
S | 922 | L922X | tTg | tAg | 1 | 1 | B.1.118 | 0.006711 |
S | 922 | L922F | ttG | ttC | 1 | 1 | B.1.147 | 0.000756 |
S | 922 | L922L | Ttg | Ctg | 1 | 1 | B.1.160 | 0.000031 |
S | 922 | L922S | tTg | tCg | 1 | 1 | B.1.160.12 | 0.00641 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.177.10 | 0.000878 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.177.11 | 0.001698 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.177.15 | 0.000631 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.177.16 | 0.000664 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 922 | L922M | Ttg | Atg | 1 | 1 | B.1.177.18 | 0.00116 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.177.32 | 0.00135 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.177.56 | 0.000668 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.177.56 | 0.000668 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.177.60 | 0.000218 |
S | 922 | L922F | ttG | ttC | 1 | 1 | B.1.177.65 | 0.000665 |
S | 922 | L922F | ttG | ttC | 1 | 1 | B.1.177.7 | 0.000165 |
S | 922 | L922F | ttG | ttC | 1 | 1 | B.1.177.78 | 0.009709 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.177.81 | 0.000189 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.189 | 0.004292 |
S | 922 | L922X | tTg | tAg | 1 | 1 | B.1.2 | 0.000009 |
S | 922 | L922S | tTg | tCg | 1 | 1 | B.1.2 | 0.000009 |
S | 922 | L922L | Ttg | Ctg | 1 | 1 | B.1.206 | 0.000816 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.210 | 0.002132 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.218 | 0.005155 |
S | 922 | L922S | tTg | tCg | 1 | 1 | B.1.221 | 0.000071 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.234 | 0.000132 |
S | 922 | L922W | tTg | tGg | 1 | 1 | B.1.240 | 0.000216 |
S | 922 | L922X | tTG | tGA | 1 | 1 | B.1.240 | 0.000216 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.240 | 0.000216 |
S | 922 | L922L | ttG | ttA | 1 | 1 | B.1.240 | 0.000216 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.243 | 0.00007 |
S | 922 | L922S | tTg | tCg | 1 | 1 | B.1.258 | 0.000067 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.301 | 0.005917 |
S | 922 | L922F | ttG | ttC | 1 | 1 | B.1.333 | 0.010526 |
S | 922 | L922F | ttG | ttC | 1 | 1 | B.1.349 | 0.000715 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.36 | 0.000146 |
S | 922 | L922L | ttG | ttA | 1 | 1 | B.1.36.36 | 0.000602 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.389 | 0.001002 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.399 | 0.001934 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.426 | 0.001009 |
S | 922 | L922L | ttG | ttA | 1 | 1 | B.1.429 | 0.000024 |
S | 922 | L922F | ttG | ttC | 1 | 1 | B.1.446 | 0.02 |
S | 922 | L922L | Ttg | Ctg | 1 | 1 | B.1.516 | 0.001957 |
S | 922 | L922V | Ttg | Gtg | 1 | 1 | B.1.544 | 0.006024 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.577 | 0.000687 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.582 | 0.000491 |
S | 922 | L922L | ttG | ttA | 1 | 1 | B.1.602 | 0.006536 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.609 | 0.000479 |
S | 922 | L922M | Ttg | Atg | 1 | 1 | B.1.617.2 | 0.000004 |
S | 922 | L922W | tTg | tGg | 1 | 1 | B.1.617.2 | 0.000004 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.628 | 0.000352 |
S | 922 | L922del | TTG | --- | 1 | 1 | B.1.630 | 0.005236 |
S | 922 | L922M | Ttg | Atg | 1 | 1 | B.1.637 | 0.000073 |
S | 922 | L922L | Ttg | Ctg | 1 | 1 | B.1.637 | 0.000073 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.1.9 | 0.006173 |
S | 922 | L922M | Ttg | Atg | 1 | 1 | B.30 | 0.014706 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.40 | 0.000364 |
S | 922 | L922F | ttG | ttC | 1 | 1 | B.58 | 0.010204 |
S | 922 | L922F | ttG | ttT | 1 | 1 | B.6 | 0.00091 |
S | 922 | L922F | ttG | ttC | 1 | 1 | C.35 | 0.000774 |
S | 922 | L922F | ttG | ttT | 1 | 1 | C.37 | 0.000116 |
S | 922 | L922F | ttG | ttC | 1 | 1 | C.8 | 0.004464 |
S | 922 | L922L | Ttg | Ctg | 1 | 1 | D.2 | 0.000075 |
S | 922 | L922F | ttG | ttT | 1 | 1 | D.2 | 0.000075 |
S | 922 | L922del | TTG | --- | 1 | 1 | D.2 | 0.000075 |
S | 922 | L922del | TTG | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 922 | L922L | Ttg | Ctg | 1 | 1 | P.1.15 | 0.000232 |
S | 922 | L922S | tTg | tCg | 1 | 1 | Q.2 | 0.000613 |
S | 922 | L922F | ttG | ttC | 1 | 1 | Q.3 | 0.000145 |
S | 922 | L922L | Ttg | Ctg | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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