CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 9

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S9P9LnonsyncCacTa295629550.99966221587-21589
S9P9LnonsyncCAcTG295610.00033829521587-21589
S9P9SnonsynCcaTca10171017121587-21589
S9P9PsynccAccG2742380.86861321587-21589
S9P9PsynccAccC274250.091240921587-21589
S9P9PsynccAccT274110.04014621587-21589
S9P9TnonsynCcaAca1151130.98260921587-21589
S9P9TnonsynCcAAcT11520.017391321587-21589
S9P9deldelCCA---4444121587-21589
S9P9QnonsyncCacAa3434121587-21589
S9P9RnonsyncCacGa2525121587-21589
S9P9del1delCca-ca760.85714321587-21589
S9P9del1delccAcc-710.14285721587-21589
S9P9del2delCCa--a11121587-21589
S9P9KnonsynCCaAAa11121587-21589
S9P9AnonsynCcaGca11121587-21589
S9P9VnonsynCCAGTT11121587-21589

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S9P9LcCacTa29552956All0.000565
S9P9LcCAcTG12956All0
S9P9SCcaTca10171017All0.000195
S9P9LcCacTa999999B.1.1.70.000894
S9P9SCcaTca440440B.1.1.70.000394
S9P9LcCacTa345345B.1.4270.017422
S9P9PccAccG238274All0.000046
S9P9PccAccC25274All0.000005
S9P9PccAccT11274All0.000002
S9P9LcCacTa218218C.1.20.92766
S9P9LcCacTa194194P.30.30941
S9P9LcCacTa183183B.1.6300.958115
S9P9LcCacTa178178AT.10.912821
S9P9PccAccG117117AY.440.000712
S9P9TCcaAca113115All0.000022
S9P9TCcAAcT2115All0
S9P9LcCacTa105105C.380.846774
S9P9LcCacTa8080B.10.000733
S9P9SCcaTca6666AY.40.000103
S9P9PccAccG5252AY.470.001617
S9P9LcCacTa4646B.1.10.000834
S9P9delCCA---4444All0.000008
S9P9LcCacTa4444B.1.20.000387
S9P9LcCacTa4242B.1.1.5240.875
S9P9SCcaTca4040B.1.617.20.000151
S9P9SCcaTca3838B.1.20.000335
S9P9QcCacAa3434All0.000007
S9P9LcCacTa3131B.1.1770.000408
S9P9LcCacTa3030N.100.882353
S9P9TCcaAca2929B.1.1.70.000026
S9P9LcCacTa2727C.36.3.10.07337
S9P9RcCacGa2525All0.000005
S9P9PccAccG2224AY.40.000034
S9P9PccAccC124AY.40.000002
S9P9PccAccT124AY.40.000002
S9P9SCcaTca2323B.1.10.000417
S9P9LcCacTa2222A.2.50.010978
S9P9LcCacTa2222B.1.5760.019946
S9P9LcCacTa2222C.390.415094
S9P9PccAccG1820B.1.1.70.000016
S9P9PccAccC220B.1.1.70.000002
S9P9SCcaTca2020B.1.1770.000263
S9P9LcCacTa2020B.1.3510.000595
S9P9LcCacTa1919B.1.214.20.011391
S9P9LcCacTa1919B.1.6370.001388
S9P9SCcaTca1717B.10.000156
S9P9QcCacAa1616B.1.1.70.000014
S9P9LcCacTa1616B.1.177.810.003029
S9P9SCcaTca1616B.1.4270.000808
S9P9SCcaTca1515AY.30.000149
S9P9LcCacTa1515B.1.1490.05137
S9P9SCcaTca1515B.1.177.150.009464
S9P9SCcaTca1515B.1.4290.000353
S9P9RcCacGa1414AY.40.000022
S9P9SCcaTca1414AY.440.000085
S9P9PccAccC1213AY.1130.001709
S9P9PccAccG113AY.1130.000142
S9P9SCcaTca1313Q.10.001642
S9P9SCcaTca1212AY.1030.000075
S9P9LcCacTa1212B.1.1600.000374
S9P9SCcaTca1111AY.250.000066
S9P9SCcaTca1111W.40.014865
S9P9SCcaTca1010AY.330.000668
S9P9LcCacTa1010B.1.1.10.003267
S9P9LcCacTa1010B.1.1.330.004209
S9P9SCcaTca99AY.98.10.000436
S9P9TCcaAca99B.10.000082
S9P9LcCacTa99B.1.1.5190.000357
S9P9SCcaTca99B.1.5260.000212
S9P9LcCacTa99B.1.617.10.001161
S9P9LcCacTa99C.370.001045
S9P9LcCacTa88B.1.4290.000188
S9P9del1Cca-ca67All0.000001
S9P9del1ccAcc-17All0
S9P9LcCacTa77AY.40.000011
S9P9SCcaTca77AY.4.20.000152
S9P9SCcaTca77AY.430.000031
S9P9LcCacTa77AY.450.000852
S9P9LcCacTa77B.1.1.2140.000388
S9P9LcCacTa77B.1.5260.000165
S9P9SCcaTca77B.1.6210.00062
S9P9SCcaTca77P.30.011164
S9P9delCCA---66AY.330.000401
S9P9SCcaTca66B.1.1600.000187
S9P9LcCacTa66B.1.2580.000399
S9P9SCcaTca66B.1.3510.000178
S9P9LcCacTa66B.1.5880.00546
S9P9SCcaTca55AY.20.001781
S9P9RcCacGa55AY.250.00003
S9P9TCcaAca55AY.40.000008
S9P9SCcaTca55AY.470.000156
S9P9PccAccC45B.1.1600.000125
S9P9PccAccG15B.1.1600.000031
S9P9TCcaAca55B.1.20.000044
S9P9LcCacTa55B.1.258.170.00052
S9P9SCcaTca55B.1.5560.037594
S9P9LcCacTa55D.20.000375
S9P9SCcaTca55P.10.000079
S9P9TCcAAcT240.111111
S9P9TCcaAca240.111111
S9P9SCcaTca44AY.1130.00057
S9P9SCcaTca44AY.290.000063
S9P9SCcaTca44AY.390.000099
S9P9PccAccG44AY.50.000083
S9P9delCCA---44B.1.10.000073
S9P9TCcaAca44B.1.10.000073
S9P9SCcaTca44B.1.1.3180.001207
S9P9LcCacTa44B.1.1.4340.001394
S9P9SCcaTca44B.1.2580.000266
S9P9SCcaTca44B.1.3690.001141
S9P9SCcaTca44B.1.438.10.000429
S9P9SCcaTca44B.1.5160.007828
S9P9LcCacTa44B.1.617.20.000015
S9P9SCcaTca44B.1.6370.000292
S9P9LcCacTa44Q.80.00066
S9P9PccAccT330.166667
S9P9SCcaTca33AY.1020.00008
S9P9SCcaTca33AY.1200.000112
S9P9SCcaTca33AY.3.10.000256
S9P9LcCacTa33AZ.2.10.02439
S9P9delCCA---33B.10.000027
S9P9PccAccG23B.10.000018
S9P9PccAccC13B.10.000009
S9P9LcCacTa33B.1.1.280.000934
S9P9LcCacTa33B.1.1.3180.000905
S9P9SCcaTca33B.1.1.4490.068182
S9P9LcCacTa33B.1.1.500.002037
S9P9RcCacGa33B.1.1.70.000003
S9P9LcCacTa33B.1.110.30.002155
S9P9TCcaAca33B.1.1600.000094
S9P9PccAccG13B.1.1770.000013
S9P9PccAccC13B.1.1770.000013
S9P9PccAccT13B.1.1770.000013
S9P9delCCA---33B.1.20.000026
S9P9LcCacTa33B.1.2340.000396
S9P9LcCacTa33B.1.2400.000647
S9P9SCcaTca33B.1.2430.000209
S9P9LcCacTa33B.1.3690.000856
S9P9LcCacTa33B.1.4040.003906
S9P9LcCacTa23B.1.5250.000226
S9P9LcCAcTG13B.1.5250.000113
S9P9LcCacTa33B.1.5950.000783
S9P9PccAccT13B.1.617.20.000004
S9P9PccAccG13B.1.617.20.000004
S9P9PccAccC13B.1.617.20.000004
S9P9TCcaAca33B.1.6370.000219
S9P9SCcaTca33D.20.000225
S9P9TCcaAca33P.10.000047
S9P9delCCA---33P.10.000047
S9P9TCcaAca33Q.10.000379
S9P9SCcaTca33Q.80.000495
S9P9LcCacTa22AD.20.000438
S9P9TCcaAca22AY.1020.000053
S9P9PccAccG22AY.1030.000012
S9P9SCcaTca22AY.1190.000071
S9P9PccAccG22AY.130.000322
S9P9SCcaTca22AY.200.000078
S9P9SCcaTca22AY.230.000139
S9P9delCCA---22AY.250.000012
S9P9PccAccG22AY.260.000057
S9P9SCcaTca22AY.260.000057
S9P9TCcaAca22AY.290.000032
S9P9PccAccC12AY.30.00001
S9P9PccAccG12AY.30.00001
S9P9SCcaTca22AY.340.000194
S9P9SCcaTca22AY.39.10.000079
S9P9delCCA---22AY.430.000009
S9P9LcCacTa22AY.440.000012
S9P9SCcaTca22AY.750.000112
S9P9SCcaTca22AY.99.20.000184
S9P9SCcaTca22B.1.1.1590.009346
S9P9LcCacTa22B.1.1.2070.002364
S9P9LcCacTa22B.1.1.2650.006309
S9P9SCcaTca22B.1.1.280.000622
S9P9LcCacTa22B.1.1.370.000386
S9P9TCcaAca22B.1.1.390.001019
S9P9LcCacTa22B.1.1.5250.010929
S9P9delCCA---22B.1.1.70.000002
S9P9SCcaTca22B.1.177.230.006472
S9P9LcCacTa22B.1.177.330.003289
S9P9LcCacTa22B.1.2210.000142
S9P9del1Cca-ca12B.1.2210.000071
S9P9del1ccAcc-12B.1.2210.000071
S9P9SCcaTca22B.1.2320.001075
S9P9SCcaTca22B.1.2340.000264
S9P9TCcaAca22B.1.2580.000133
S9P9LcCacTa22B.1.3110.000549
S9P9SCcaTca22B.1.351.50.001199
S9P9TCcaAca22B.1.36.10.002281
S9P9LcCacTa22B.1.36.350.005208
S9P9LcCacTa22B.1.390.007812
S9P9LcCacTa22B.1.3960.001411
S9P9SCcaTca22B.1.466.20.000782
S9P9LcCacTa22B.1.466.20.000782
S9P9SCcaTca22B.1.4970.00063
S9P9delCCA---22B.1.5250.000226
S9P9SCcaTca22B.1.5960.000174
S9P9LcCacTa22B.1.6210.000177
S9P9QcCacAa22B.6.60.001778
S9P9LcCacTa22C.10.004785
S9P9LcCacTa22C.230.011628
S9P9SCcaTca22C.360.001821
S9P9TCcaAca22P.20.000373
S9P9LcCacTa22P.20.000373
S9P9LcCacTa22P.50.027397
S9P9PccAccG22Z.10.00578
S9P9del1Cca-ca110.055556
S9P9LcCacTa11A0.000387
S9P9LcCacTa11A.20.000662
S9P9delCCA---11A.2.40.003367
S9P9PccAccG11A.2.40.003367
S9P9TCcaAca11A.2.50.000499
S9P9SCcaTca11A.2.50.000499
S9P9LcCacTa11A.2.5.10.004808
S9P9SCcaTca11A.2.5.30.010309
S9P9ACcaGca11All0
S9P9VCCAGTT11All0
S9P9KCCaAAa11All0
S9P9del2CCa--a11All0
S9P9LcCacTa11AU.10.001266
S9P9delCCA---11AY.1000.000046
S9P9PccAccC11AY.1000.000046
S9P9QcCacAa11AY.1000.000046
S9P9LcCacTa11AY.1020.000027
S9P9PccAccG11AY.1020.000027
S9P9LcCacTa11AY.1030.000006
S9P9TCcaAca11AY.1030.000006
S9P9delCCA---11AY.1030.000006
S9P9SCcaTca11AY.1040.001984
S9P9LcCacTa11AY.110.001339
S9P9SCcaTca11AY.1180.000063
S9P9PccAccG11AY.1180.000063
S9P9TCcaAca11AY.1200.000037
S9P9LcCacTa11AY.130.000161
S9P9QcCacAa11AY.160.00038
S9P9LcCacTa11AY.16.10.00047
S9P9SCcaTca11AY.16.10.00047
S9P9PccAccG11AY.200.000039
S9P9LcCacTa11AY.23.10.000417
S9P9SCcaTca11AY.23.10.000417
S9P9LcCacTa11AY.250.000006
S9P9TCcaAca11AY.250.000006
S9P9TCcaAca11AY.260.000028
S9P9LcCacTa11AY.30.00001
S9P9LcCacTa11AY.300.000396
S9P9SCcaTca11AY.350.000233
S9P9SCcaTca11AY.360.000148
S9P9TCcaAca11AY.390.000025
S9P9PccAccG11AY.39.10.00004
S9P9QcCacAa11AY.39.10.00004
S9P9QcCacAa11AY.40.000002
S9P9QcCacAa11AY.4.20.000022
S9P9delCCA---11AY.4.30.000842
S9P9LcCacTa11AY.420.00004
S9P9delCCA---11AY.420.00004
S9P9PccAccG11AY.420.00004
S9P9TCcaAca11AY.420.00004
S9P9QcCacAa11AY.420.00004
S9P9LcCacTa11AY.430.000004
S9P9TCcaAca11AY.430.000004
S9P9delCCA---11AY.440.000006
S9P9QcCacAa11AY.460.000104
S9P9RcCacGa11AY.46.50.000198
S9P9SCcaTca11AY.46.50.000198
S9P9delCCA---11AY.470.000031
S9P9LcCacTa11AY.530.000288
S9P9QcCacAa11AY.530.000288
S9P9delCCA---11AY.540.000095
S9P9SCcaTca11AY.580.000907
S9P9SCcaTca11AY.60.000041
S9P9SCcaTca11AY.610.000105
S9P9QcCacAa11AY.670.000464
S9P9delCCA---11AY.680.000274
S9P9SCcaTca11AY.690.000187
S9P9LcCacTa11AY.7.10.000113
S9P9TCcaAca11AY.700.000209
S9P9LcCacTa11AY.750.000056
S9P9LcCacTa11AY.75.10.00018
S9P9TCcaAca11AY.760.004831
S9P9SCcaTca11AY.860.00083
S9P9SCcaTca11AY.90.000068
S9P9RcCacGa11AY.90.000068
S9P9SCcaTca11AY.900.000684
S9P9SCcaTca11AZ.30.00152
S9P9QcCacAa11B0.000128
S9P9SCcaTca11B0.000128
S9P9QcCacAa11B.10.000009
S9P9del1Cca-ca11B.10.000009
S9P9VCCAGTT11B.1.10.000018
S9P9SCcaTca11B.1.1.1760.000439
S9P9LcCacTa11B.1.1.1760.000439
S9P9PccAccC11B.1.1.1760.000439
S9P9LcCacTa11B.1.1.1850.076923
S9P9SCcaTca11B.1.1.1890.001513
S9P9LcCacTa11B.1.1.1890.001513
S9P9LcCacTa11B.1.1.1920.002309
S9P9KCCaAAa11B.1.1.2140.000055
S9P9QcCacAa11B.1.1.250.000569
S9P9LcCacTa11B.1.1.250.000569
S9P9SCcaTca11B.1.1.2630.001558
S9P9LcCacTa11B.1.1.2770.000759
S9P9SCcaTca11B.1.1.2940.001266
S9P9TCcaAca11B.1.1.3030.002762
S9P9LcCacTa11B.1.1.3110.000358
S9P9delCCA---11B.1.1.3150.008475
S9P9LcCacTa11B.1.1.3170.000412
S9P9SCcaTca11B.1.1.3170.000412
S9P9QcCacAa11B.1.1.3290.003846
S9P9SCcaTca11B.1.1.330.000421
S9P9SCcaTca11B.1.1.3330.001076
S9P9LcCacTa11B.1.1.3370.003597
S9P9LcCacTa11B.1.1.3690.000446
S9P9SCcaTca11B.1.1.370.000193
S9P9TCcaAca11B.1.1.3720.000689
S9P9SCcaTca11B.1.1.3720.000689
S9P9LcCacTa11B.1.1.3770.001381
S9P9SCcaTca11B.1.1.390.00051
S9P9LcCacTa11B.1.1.3970.002252
S9P9LcCacTa11B.1.1.4020.011111
S9P9LcCacTa11B.1.1.4320.001266
S9P9LcCacTa11B.1.1.440.00241
S9P9LcCacTa11B.1.1.4480.002033
S9P9delCCA---11B.1.1.460.004367
S9P9LcCacTa11B.1.1.4630.0625
S9P9LcCacTa11B.1.1.480.002874
S9P9SCcaTca11B.1.1.5190.00004
S9P9RcCacGa11B.1.1.5190.00004
S9P9TCcaAca11B.1.1.5190.00004
S9P9LcCacTa11B.1.1.530.013699
S9P9SCcaTca11B.1.1.630.000386
S9P9del1Cca-ca11B.1.1.70.000001
S9P9SCcaTca11B.1.1.710.006061
S9P9LcCacTa11B.1.1110.001175
S9P9LcCacTa11B.1.1280.000635
S9P9SCcaTca11B.1.130.002375
S9P9TCcaAca11B.1.160.100.008065
S9P9TCcaAca11B.1.160.110.005714
S9P9TCcaAca11B.1.160.120.00641
S9P9TCcaAca11B.1.160.140.002119
S9P9TCcaAca11B.1.160.160.000929
S9P9SCcaTca11B.1.160.260.002421
S9P9TCcaAca11B.1.160.260.002421
S9P9TCcaAca11B.1.160.310.008065
S9P9TCcaAca11B.1.160.320.004292
S9P9TCcaAca11B.1.1770.000013
S9P9LcCacTa11B.1.177.120.000152
S9P9LcCacTa11B.1.177.210.000076
S9P9LcCacTa11B.1.177.30.007634
S9P9TCcaAca11B.1.177.350.000691
S9P9LcCacTa11B.1.177.40.000211
S9P9SCcaTca11B.1.177.440.000519
S9P9LcCacTa11B.1.177.440.000519
S9P9TCcaAca11B.1.177.440.000519
S9P9SCcaTca11B.1.177.560.000668
S9P9LcCacTa11B.1.177.570.000281
S9P9SCcaTca11B.1.177.570.000281
S9P9delCCA---11B.1.177.680.015152
S9P9SCcaTca11B.1.177.70.000165
S9P9delCCA---11B.1.177.810.000189
S9P9delCCA---11B.1.177.830.001481
S9P9TCcaAca11B.1.177.860.000183
S9P9SCcaTca11B.1.177.870.000728
S9P9SCcaTca11B.1.177.90.001332
S9P9LcCacTa11B.1.177.90.001332
S9P9TCcaAca11B.1.2100.002132
S9P9LcCacTa11B.1.2100.002132
S9P9TCcaAca11B.1.2210.000071
S9P9SCcaTca11B.1.2210.000071
S9P9PccAccG11B.1.2210.000071
S9P9PccAccT11B.1.221.30.000833
S9P9PccAccG11B.1.2360.002053
S9P9LcCacTa11B.1.2390.001221
S9P9LcCacTa11B.1.2410.000812
S9P9SCcaTca11B.1.2410.000812
S9P9LcCacTa11B.1.2520.006623
S9P9SCcaTca11B.1.258.100.011364
S9P9TCcaAca11B.1.258.170.000104
S9P9SCcaTca11B.1.258.170.000104
S9P9del1Cca-ca11B.1.258.170.000104
S9P9SCcaTca11B.1.258.70.001912
S9P9TCcaAca11B.1.2600.003344
S9P9SCcaTca11B.1.2810.021739
S9P9LcCacTa11B.1.3230.020833
S9P9LcCacTa11B.1.3240.001605
S9P9LcCacTa11B.1.3350.010309
S9P9PccAccT11B.1.3430.020833
S9P9SCcaTca11B.1.360.000146
S9P9TCcaAca11B.1.36.170.000494
S9P9LcCacTa11B.1.36.290.000517
S9P9SCcaTca11B.1.36.290.000517
S9P9SCcaTca11B.1.36.360.000602
S9P9LcCacTa11B.1.3610.001289
S9P9TCcaAca11B.1.3690.000285
S9P9LcCacTa11B.1.3800.006623
S9P9SCcaTca11B.1.3890.001002
S9P9SCcaTca11B.1.3910.001127
S9P9LcCacTa11B.1.3990.001934
S9P9SCcaTca11B.1.4110.003704
S9P9SCcaTca11B.1.4160.001269
S9P9LcCacTa11B.1.4160.001269
S9P9SCcaTca11B.1.4170.028571
S9P9QcCacAa11B.1.4290.000024
S9P9SCcaTca11B.1.4330.003195
S9P9LcCacTa11B.1.4330.003195
S9P9delCCA---11B.1.4530.003236
S9P9LcCacTa11B.1.4590.004082
S9P9TCcaAca11B.1.466.20.000391
S9P9PccAccG11B.1.466.20.000391
S9P9LcCacTa11B.1.4860.111111
S9P9PccAccT11B.1.4970.000315
S9P9LcCacTa11B.1.499.10.111111
S9P9LcCacTa11B.1.5010.007353
S9P9TCcaAca11B.1.5100.026316
S9P9PccAccT11B.1.5260.000024
S9P9LcCacTa11B.1.5290.055556
S9P9SCcaTca11B.1.5340.0125
S9P9SCcaTca11B.1.5680.001111
S9P9SCcaTca11B.1.5750.000303
S9P9SCcaTca11B.1.5950.000261
S9P9LcCacTa11B.1.5960.000087
S9P9PccAccT11B.1.5960.000087
S9P9SCcaTca11B.1.6090.000479
S9P9LcCacTa11B.1.6090.000479
S9P9SCcaTca11B.1.6100.003546
S9P9SCcaTca11B.1.617.10.000129
S9P9ACcaGca11B.1.617.20.000004
S9P9TCcaAca11B.1.617.20.000004
S9P9delCCA---11B.1.617.20.000004
S9P9LcCacTa11B.1.6180.004032
S9P9LcCacTa11B.1.619.10.000641
S9P9delCCA---11B.1.6200.000946
S9P9LcCacTa11B.1.6230.000536
S9P9SCcaTca11B.1.80.001972
S9P9SCcaTca11B.1.88.10.004808
S9P9LcCacTa11B.1.930.000934
S9P9SCcaTca11B.150.017544
S9P9SCcaTca11B.200.023256
S9P9LcCacTa11B.310.003731
S9P9LcCacTa11B.40.002208
S9P9PccAccG11B.4.10.018868
S9P9LcCacTa11B.400.000364
S9P9LcCacTa11B.60.00091
S9P9TCcaAca11C.160.00106
S9P9SCcaTca11C.160.00106
S9P9LcCacTa11C.350.000774
S9P9LcCacTa11C.40.01
S9P9LcCacTa11P.10.000016
S9P9LcCacTa11P.1.10.000318
S9P9del2CCa--a11P.1.100.000269
S9P9SCcaTca11P.1.140.000048
S9P9QcCacAa11P.1.140.000048
S9P9SCcaTca11P.1.150.000232
S9P9SCcaTca11P.1.170.000162
S9P9SCcaTca11P.1.70.000319
S9P9QcCacAa11P.30.001595
S9P9LcCacTa11Q.10.000126
S9P9LcCacTa11Q.30.000145
S9P9del1Cca-ca11Q.80.000165