CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 899

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S899A899SnonsynGctTct434143400.9997724257-24259
S899A899SnonsynGcTTcA434110.00023036224257-24259
S899A899AsyngcTgcC4504220.93777824257-24259
S899A899AsyngcTgcA450260.057777824257-24259
S899A899AsyngcTgcG45020.0044444424257-24259
S899A899deldelGCT---101101124257-24259
S899A899VnonsyngCtgTt4444124257-24259
S899A899TnonsynGctAct1212124257-24259
S899A899DnonsyngCtgAt99124257-24259
S899A899NnonsynGCtAAt44124257-24259
S899A899del2delgCTg--22124257-24259
S899A899YnonsynGCtTAt22124257-24259
S899A899KnonsynGCTAAA210.524257-24259
S899A899RnonsynGCTAGA210.524257-24259
S899A899RnonsynGCTAGG210.524257-24259
S899A899KnonsynGCTAAG210.524257-24259
S899A899FnonsynGCtTTt11124257-24259
S899A899PnonsynGctCct11124257-24259
S899A899del1delGCtA-t11124257-24259
S899A899GnonsyngCtgGt11124257-24259

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S899A899SGctTct43404341All0.00083
S899A899SGcTTcA14341All0
S899A899SGctTct17541754C.36.30.994895
S899A899SGctTct777777B.1.3510.023098
S899A899AgcTgcC422450All0.000081
S899A899AgcTgcA26450All0.000005
S899A899AgcTgcG2450All0
S899A899SGctTct307307C.36.3.10.834239
S899A899SGctTct305306B.10.002794
S899A899SGcTTcA1306B.10.000009
S899A899SGctTct155155B.1.1.70.000139
S899A899SGctTct118118AZ.60.991597
S899A899SGctTct115115AY.40.000179
S899A899AgcTgcC105109B.1.1.70.000094
S899A899AgcTgcA4109B.1.1.70.000004
S899A899delGCT---101101All0.000019
S899A899SGctTct9898B.1.10.001778
S899A899SGctTct9191B.1.177.410.2275
S899A899SGctTct7878B.1.617.20.000294
S899A899VgCtgTt4444All0.000008
S899A899SGctTct4242AY.250.000253
S899A899delGCT---3939B.1.1.70.000035
S899A899SGctTct3737B.1.177.860.006788
S899A899SGctTct3636C.360.032787
S899A899SGctTct3535B.1.20.000308
S899A899SGctTct3232B.1.258.170.003327
S899A899AgcTgcC3030AY.1030.000186
S899A899SGctTct3030AY.440.000183
S899A899AgcTgcC2629B.1.20.000229
S899A899AgcTgcA329B.1.20.000026
S899A899AgcTgcC2929B.1.5260.000682
S899A899AgcTgcC2727AY.40.000042
S899A899SGctTct2727AY.430.00012
S899A899SGctTct2323AY.4.2.10.003427
S899A899AgcTgcC2021B.1.617.20.000075
S899A899AgcTgcA121B.1.617.20.000004
S899A899SGctTct2020AY.260.000566
S899A899AgcTgcC1919AY.1050.012219
S899A899SGctTct1919B.1.1.2970.042506
S899A899AgcTgcC1616AY.390.000395
S899A899SGctTct1414AY.30.000139
S899A899SGctTct1414B.1.1770.000184
S899A899SGctTct1313B.1.1.630.005015
S899A899SGctTct1313D.20.000976
S899A899TGctAct1212All0.000002
S899A899AgcTgcC1212AY.116.10.003737
S899A899SGctTct1111AY.1030.000068
S899A899AgcTgcC1111AY.30.000109
S899A899AgcTgcC1111AY.5.30.003711
S899A899AgcTgcC1111AY.9.20.000404
S899A899SGctTct1111B.1.30.028796
S899A899DgCtgAt99All0.000002
S899A899AgcTgcC99AY.610.000943
S899A899AgcTgcA69B.10.000055
S899A899AgcTgcC29B.10.000018
S899A899AgcTgcG19B.10.000009
S899A899VgCtgTt99B.1.1.70.000008
S899A899SGctTct88AY.200.000311
S899A899AgcTgcC88AY.250.000048
S899A899SGctTct88AY.330.000534
S899A899SGctTct88AY.450.000973
S899A899SGctTct88B.1.1.3180.002414
S899A899SGctTct77P.20.001306
S899A899delGCT---66AY.40.000009
S899A899AgcTgcC56AY.430.000022
S899A899AgcTgcA16AY.430.000004
S899A899AgcTgcC66AY.440.000037
S899A899AgcTgcC66AY.50.000124
S899A899AgcTgcC66B.1.1770.000079
S899A899AgcTgcC55AY.1020.000133
S899A899AgcTgcC55AY.39.10.000198
S899A899SGctTct55B.1.1.5190.000199
S899A899delGCT---55B.1.1770.000066
S899A899SGctTct55B.1.177.730.002831
S899A899SGctTct55B.1.230.030303
S899A899SGctTct55B.1.3180.192308
S899A899NGCtAAt44All0.000001
S899A899AgcTgcC44AY.200.000155
S899A899SGctTct44AY.4.20.000087
S899A899SGctTct44B.1.1.2160.003562
S899A899SGctTct44B.1.1.3720.002755
S899A899SGctTct44B.1.2210.000284
S899A899SGctTct44B.1.4290.000094
S899A899SGctTct44B.1.5240.005626
S899A899AgcTgcC44B.1.6210.000354
S899A899AgcTgcC33AY.1140.000693
S899A899VgCtgTt33AY.40.000005
S899A899AgcTgcC33AY.4.20.000065
S899A899delGCT---33AY.4.50.000322
S899A899AgcTgcC33B.1.10.000054
S899A899SGctTct33B.1.1.10.00098
S899A899VgCtgTt33B.1.1.1860.010309
S899A899SGctTct33B.1.1600.000094
S899A899delGCT---33B.1.20.000026
S899A899DgCtgAt33B.1.3980.008929
S899A899NGCtAAt33B.1.5820.001472
S899A899delGCT---33B.1.617.20.000011
S899A899SGctTct33C.370.000348
S899A899delGCT---220.111111
S899A899YGCtTAt220.111111
S899A899AgcTgcA220.111111
S899A899del2gCTg--220.111111
S899A899YGCtTAt22All0
S899A899del2gCTg--22All0
S899A899RGCTAGG12All0
S899A899RGCTAGA12All0
S899A899KGCTAAG12All0
S899A899KGCTAAA12All0
S899A899VgCtgTt22AY.1030.000012
S899A899AgcTgcC22AY.1170.000169
S899A899delGCT---22AY.1200.000074
S899A899SGctTct22AY.270.000129
S899A899AgcTgcC22AY.290.000032
S899A899SGctTct22AY.350.000466
S899A899TGctAct22AY.380.000999
S899A899SGctTct22AY.390.000049
S899A899delGCT---22AY.430.000009
S899A899TGctAct22AY.430.000009
S899A899VgCtgTt22AY.430.000009
S899A899delGCT---22AY.440.000012
S899A899SGctTct22AY.470.000062
S899A899VgCtgTt22AY.7.10.000225
S899A899AgcTgcC22AY.920.000575
S899A899VgCtgTt22B.10.000018
S899A899KGCTAAG12B.1.10.000018
S899A899KGCTAAA12B.1.10.000018
S899A899RGCTAGG12B.1.10.000018
S899A899RGCTAGA12B.1.10.000018
S899A899AgcTgcC22B.1.1.10.000653
S899A899SGctTct22B.1.1.330.000842
S899A899AgcTgcC22B.1.1.530.027397
S899A899TGctAct22B.1.1.70.000002
S899A899DgCtgAt22B.1.1600.000062
S899A899SGctTct22B.1.2140.007326
S899A899TGctAct22B.1.214.30.014286
S899A899SGctTct22B.1.2320.001075
S899A899SGctTct22B.1.2430.000139
S899A899SGctTct22B.1.360.000292
S899A899SGctTct22B.1.3690.00057
S899A899delGCT---22B.1.5260.000047
S899A899VgCtgTt22B.1.617.20.000008
S899A899SGctTct22B.1.810.042553
S899A899AgcTgcC22D.20.00015
S899A899delGCT---11A0.000387
S899A899AgcTgcA11A.20.000662
S899A899SGctTct11A.2.50.000499
S899A899SGctTct11A.2.5.20.001572
S899A899del1GCtA-t11All0
S899A899FGCtTTt11All0
S899A899PGctCct11All0
S899A899GgCtgGt11All0
S899A899VgCtgTt11AY.100.00053
S899A899SGctTct11AY.1000.000046
S899A899SGctTct11AY.1020.000027
S899A899SGctTct11AY.1070.000466
S899A899delGCT---11AY.1110.000183
S899A899VgCtgTt11AY.1140.000231
S899A899AgcTgcC11AY.1160.000287
S899A899TGctAct11AY.1170.000085
S899A899SGctTct11AY.1190.000035
S899A899AgcTgcC11AY.1200.000037
S899A899AgcTgcC11AY.140.000088
S899A899SGctTct11AY.230.00007
S899A899AgcTgcC11AY.230.00007
S899A899delGCT---11AY.250.000006
S899A899AgcTgcC11AY.260.000028
S899A899AgcTgcC11AY.270.000065
S899A899SGctTct11AY.290.000016
S899A899VgCtgTt11AY.30.00001
S899A899delGCT---11AY.30.00001
S899A899AgcTgcC11AY.330.000067
S899A899VgCtgTt11AY.330.000067
S899A899delGCT---11AY.360.000148
S899A899SGctTct11AY.380.000499
S899A899TGctAct11AY.390.000025
S899A899SGctTct11AY.39.10.00004
S899A899VgCtgTt11AY.39.20.001541
S899A899AgcTgcC11AY.420.00004
S899A899SGctTct11AY.420.00004
S899A899VgCtgTt11AY.440.000006
S899A899delGCT---11AY.46.20.000635
S899A899AgcTgcC11AY.470.000031
S899A899delGCT---11AY.60.000041
S899A899AgcTgcC11AY.670.000464
S899A899SGctTct11AY.680.000274
S899A899AgcTgcC11AY.7.20.000559
S899A899delGCT---11AY.720.001361
S899A899GgCtgGt11AY.75.10.00018
S899A899AgcTgcC11AY.890.004902
S899A899SGctTct11AY.90.000068
S899A899AgcTgcC11AY.90.000068
S899A899AgcTgcC11AY.980.000079
S899A899SGctTct11AY.980.000079
S899A899SGctTct11AY.98.10.000048
S899A899DgCtgAt11AY.990.001049
S899A899SGctTct11AY.99.20.000092
S899A899FGCtTTt11B.10.000009
S899A899NGCtAAt11B.10.000009
S899A899delGCT---11B.10.000009
S899A899TGctAct11B.1.10.000018
S899A899delGCT---11B.1.10.000018
S899A899SGctTct11B.1.1.1700.001247
S899A899SGctTct11B.1.1.1710.003676
S899A899VgCtgTt11B.1.1.2160.00089
S899A899SGctTct11B.1.1.2200.001859
S899A899delGCT---11B.1.1.2360.006897
S899A899SGctTct11B.1.1.2770.000759
S899A899SGctTct11B.1.1.3080.011765
S899A899delGCT---11B.1.1.3110.000358
S899A899VgCtgTt11B.1.1.3290.003846
S899A899SGctTct11B.1.1.3690.000446
S899A899AgcTgcA11B.1.1.3720.000689
S899A899AgcTgcC11B.1.1.460.004367
S899A899AgcTgcC11B.1.1.5190.00004
S899A899PGctCct11B.1.1.70.000001
S899A899AgcTgcA11B.1.1600.000031
S899A899VgCtgTt11B.1.1600.000031
S899A899DgCtgAt11B.1.160.110.005714
S899A899SGctTct11B.1.160.110.005714
S899A899AgcTgcA11B.1.160.140.002119
S899A899DgCtgAt11B.1.1770.000013
S899A899delGCT---11B.1.177.100.000878
S899A899AgcTgcA11B.1.177.150.000631
S899A899delGCT---11B.1.177.170.000821
S899A899delGCT---11B.1.177.210.000076
S899A899AgcTgcA11B.1.177.230.003236
S899A899SGctTct11B.1.177.40.000211
S899A899delGCT---11B.1.177.480.003125
S899A899delGCT---11B.1.177.540.000606
S899A899delGCT---11B.1.177.560.000668
S899A899VgCtgTt11B.1.177.60.000977
S899A899delGCT---11B.1.177.600.000218
S899A899delGCT---11B.1.177.630.002703
S899A899SGctTct11B.1.177.650.000665
S899A899SGctTct11B.1.177.830.001481
S899A899delGCT---11B.1.177.870.000728
S899A899delGCT---11B.1.1790.003759
S899A899DgCtgAt11B.1.20.000009
S899A899VgCtgTt11B.1.20.000009
S899A899delGCT---11B.1.2210.000071
S899A899SGctTct11B.1.2230.002778
S899A899SGctTct11B.1.2340.000132
S899A899AgcTgcA11B.1.2340.000132
S899A899SGctTct11B.1.2400.000216
S899A899SGctTct11B.1.2580.000067
S899A899VgCtgTt11B.1.2580.000067
S899A899delGCT---11B.1.2580.000067
S899A899AgcTgcC11B.1.258.30.001675
S899A899VgCtgTt11B.1.3510.00003
S899A899AgcTgcC11B.1.3510.00003
S899A899SGctTct11B.1.351.30.000876
S899A899delGCT---11B.1.360.000146
S899A899delGCT---11B.1.36.170.000494
S899A899delGCT---11B.1.36.180.00042
S899A899SGctTct11B.1.36.220.001208
S899A899SGctTct11B.1.36.350.002604
S899A899SGctTct11B.1.36.80.001
S899A899SGctTct11B.1.3750.00082
S899A899VgCtgTt11B.1.3890.001002
S899A899SGctTct11B.1.4270.00005
S899A899AgcTgcC11B.1.4290.000024
S899A899SGctTct11B.1.4680.005714
S899A899SGctTct11B.1.4690.00361
S899A899SGctTct11B.1.4800.002488
S899A899AgcTgcC11B.1.5090.000866
S899A899VgCtgTt11B.1.5260.000024
S899A899SGctTct11B.1.5380.008065
S899A899SGctTct11B.1.5760.000907
S899A899SGctTct11B.1.5770.000687
S899A899delGCT---11B.1.5770.000687
S899A899AgcTgcA11B.1.5900.004545
S899A899SGctTct11B.1.5950.000261
S899A899AgcTgcC11B.1.5960.000087
S899A899TGctAct11B.1.5960.000087
S899A899AgcTgcA11B.1.6090.000479
S899A899SGctTct11B.1.6090.000479
S899A899AgcTgcC11B.1.617.10.000129
S899A899SGctTct11B.1.617.10.000129
S899A899del1GCtA-t11B.1.617.20.000004
S899A899SGctTct11B.1.6210.000089
S899A899SGctTct11B.1.6230.000536
S899A899delGCT---11B.1.6300.005236
S899A899SGctTct11B.1.930.000934
S899A899SGctTct11C.160.00106
S899A899VgCtgTt11D.20.000075
S899A899VgCtgTt11P.10.000016
S899A899AgcTgcC11P.10.000016
S899A899SGctTct11P.10.000016
S899A899delGCT---11P.1.130.000898
S899A899AgcTgcC11P.1.140.000048
S899A899VgCtgTt11P.20.000187
S899A899delGCT---11Q.10.000126
S899A899VgCtgTt11R.10.00009
S899A899delGCT---11U.30.003861
S899A899AgcTgcG11W.40.001351
S899A899SGctTct11W.40.001351