CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 882

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S882I882IsynatCatT1654221653890.99980124206-24208
S882I882IsynatCatA165422330.0001994924206-24208
S882I882VnonsynAtcGtc1651640.99393924206-24208
S882I882VnonsynAtCGtT16510.0060606124206-24208
S882I882deldelATC---131131124206-24208
S882I882TnonsynaTcaCc21190.90476224206-24208
S882I882TnonsynaTCaCT2120.095238124206-24208
S882I882LnonsynAtcCtc970.77777824206-24208
S882I882LnonsynAtCCtT920.22222224206-24208
S882I882FnonsynAtcTtc55124206-24208
S882I882NnonsynaTcaAc540.824206-24208
S882I882NnonsynaTCaAT510.224206-24208
S882I882SnonsynaTcaGc33124206-24208
S882I882MnonsynatCatG33124206-24208
S882I882del1delatCat-210.524206-24208
S882I882del1delaTca-c210.524206-24208
S882I882GnonsynATCGGT11124206-24208
S882I882AnonsynATCGCT11124206-24208
S882I882del2delATC--N11124206-24208

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S882I882IatCatT165389165422All0.031633
S882I882IatCatA33165422All0.000006
S882I882IatCatT155337155337AY.1030.964497
S882I882IatCatT88388838B.1.617.20.033279
S882I882IatCatT182183AY.40.000283
S882I882IatCatA1183AY.40.000002
S882I882VAtcGtc164165All0.000031
S882I882VAtCGtT1165All0
S882I882IatCatT161161B.1.20.001418
S882I882IatCatT141142AY.440.000858
S882I882IatCatA1142AY.440.000006
S882I882delATC---131131All0.000025
S882I882IatCatT94110B.1.1.70.000084
S882I882IatCatA16110B.1.1.70.000014
S882I882IatCatT99100AY.1170.008367
S882I882IatCatA1100AY.1170.000085
S882I882IatCatT9699B.10.000879
S882I882IatCatA399B.10.000027
S882I882IatCatT6969AY.450.008396
S882I882IatCatT5763B.1.10.001034
S882I882IatCatA663B.1.10.000109
S882I882VAtcGtc5454AY.250.000325
S882I882delATC---4545B.1.1.70.00004
S882I882IatCatT3838B.1.177.860.006971
S882I882IatCatT3333AY.1190.001165
S882I882IatCatT2324AY.430.000102
S882I882IatCatA124AY.430.000004
S882I882IatCatT2222AY.390.000544
S882I882TaTcaCc1921All0.000004
S882I882TaTCaCT221All0
S882I882IatCatT2121AY.460.002186
S882I882VAtcGtc1818B.1.1.70.000016
S882I882VAtcGtc1616B.1.5490.115108
S882I882VAtcGtc1414AY.40.000022
S882I882IatCatT1313AY.420.000523
S882I882IatCatT1212AY.250.000072
S882I882IatCatT1111AY.540.001049
S882I882IatCatT1010AY.1080.011025
S882I882VAtcGtc1010AY.440.000061
S882I882LAtcCtc79All0.000001
S882I882LAtCCtT29All0
S882I882VAtcGtc88AY.1140.001849
S882I882IatCatT88AY.260.000226
S882I882VAtcGtc88B.10.000073
S882I882VAtcGtc88B.1.5250.000905
S882I882delATC---88B.1.617.20.00003
S882I882IatCatT77AY.1180.000439
S882I882IatCatT77AY.30.00007
S882I882IatCatT77AY.340.000679
S882I882TaTcaCc77AY.40.000011
S882I882IatCatT77AY.470.000218
S882I882IatCatT77AY.50.000145
S882I882delATC---66AY.40.000009
S882I882delATC---66B.1.1770.000079
S882I882FAtcTtc55All0.000001
S882I882NaTcaAc45All0.000001
S882I882NaTCaAT15All0
S882I882IatCatT55AY.930.001365
S882I882IatCatT45P.10.000063
S882I882IatCatA15P.10.000016
S882I882delATC---440.222222
S882I882delATC---44AY.4.50.00043
S882I882delATC---44AY.430.000018
S882I882IatCatT44AY.750.000224
S882I882delATC---44B.1.20.000035
S882I882SaTcaGc33All0.000001
S882I882MatCatG33All0.000001
S882I882IatCatT33AY.1100.000338
S882I882VAtcGtc33AY.140.000264
S882I882IatCatT33AY.240.001293
S882I882VAtcGtc33AY.330.0002
S882I882IatCatT33AY.650.001599
S882I882IatCatT33AY.98.10.000145
S882I882TaTcaCc33B.1.1.70.000003
S882I882LAtCCtT220.111111
S882I882TaTCaCT220.111111
S882I882del1atCat-12All0
S882I882del1aTca-c12All0
S882I882IatCatT22AY.10.000791
S882I882IatCatT22AY.1000.000092
S882I882IatCatA12AY.1020.000027
S882I882IatCatT12AY.1020.000027
S882I882IatCatT22AY.1130.000285
S882I882IatCatT22AY.1160.000574
S882I882delATC---22AY.1200.000074
S882I882IatCatT22AY.120.10.000642
S882I882IatCatT22AY.200.000078
S882I882VAtcGtc22AY.430.000009
S882I882TaTcaCc22AY.440.000012
S882I882IatCatT22AY.46.10.002053
S882I882delATC---22AY.50.000041
S882I882IatCatT22AY.620.000871
S882I882IatCatT22AY.680.000547
S882I882VAtcGtc22AY.720.002721
S882I882IatCatT22AY.75.10.000361
S882I882IatCatT22AY.9.20.000073
S882I882IatCatT22AY.920.000575
S882I882VAtcGtc22AY.980.000158
S882I882delATC---22B.10.000018
S882I882delATC---22B.1.10.000036
S882I882VAtcGtc22B.1.10.000036
S882I882FAtcTtc22B.1.1.4640.002946
S882I882LAtcCtc22B.1.1.70.000002
S882I882IatCatT22B.1.1770.000026
S882I882NaTcaAc22B.1.1770.000026
S882I882delATC---22B.1.2580.000133
S882I882delATC---22B.1.5260.000047
S882I882IatCatT22P.1.140.000096
S882I882IatCatT22P.20.000373
S882I882delATC---11A0.000387
S882I882IatCatT11A.10.000282
S882I882LAtcCtc11A.20.000662
S882I882IatCatT11A.23.10.000704
S882I882delATC---11AH.30.003802
S882I882AATCGCT11All0
S882I882del2ATC--N11All0
S882I882GATCGGT11All0
S882I882TaTcaCc11AS.20.015625
S882I882IatCatT11AY.100.00053
S882I882VAtcGtc11AY.1020.000027
S882I882VAtCGtT11AY.1030.000006
S882I882delATC---11AY.1110.000183
S882I882IatCatT11AY.1140.000231
S882I882IatCatT11AY.116.10.000311
S882I882SaTcaGc11AY.1170.000085
S882I882TaTcaCc11AY.1180.000063
S882I882IatCatT11AY.130.000161
S882I882IatCatT11AY.140.000088
S882I882delATC---11AY.190.00114
S882I882TaTcaCc11AY.200.000039
S882I882LAtcCtc11AY.200.000039
S882I882IatCatT11AY.230.00007
S882I882FAtcTtc11AY.250.000006
S882I882delATC---11AY.250.000006
S882I882GATCGGT11AY.250.000006
S882I882VAtcGtc11AY.260.000028
S882I882TaTcaCc11AY.30.00001
S882I882VAtcGtc11AY.320.000532
S882I882IatCatT11AY.350.000233
S882I882delATC---11AY.360.000148
S882I882VAtcGtc11AY.390.000025
S882I882LAtcCtc11AY.40.000002
S882I882IatCatT11AY.4.20.000022
S882I882VAtcGtc11AY.4.20.000022
S882I882VAtcGtc11AY.4.2.10.000149
S882I882delATC---11AY.440.000006
S882I882NaTCaAT11AY.440.000006
S882I882VAtcGtc11AY.450.000122
S882I882delATC---11AY.46.20.000635
S882I882IatCatT11AY.46.40.000165
S882I882IatCatT11AY.480.000465
S882I882FAtcTtc11AY.50.000021
S882I882IatCatT11AY.610.000105
S882I882delATC---11AY.670.000464
S882I882VAtcGtc11AY.700.000209
S882I882IatCatT11AY.710.000475
S882I882delATC---11AY.720.001361
S882I882delATC---11AY.750.000056
S882I882delATC---11AY.810.001992
S882I882IatCatT11AY.820.001357
S882I882IatCatT11AY.880.000884
S882I882delATC---11AY.90.000068
S882I882IatCatT11AY.900.000684
S882I882VAtcGtc11AY.950.000761
S882I882IatCatT11AY.950.000761
S882I882IatCatT11AY.960.002075
S882I882IatCatT11AY.980.000079
S882I882delATC---11AY.990.001049
S882I882delATC---11AY.99.10.001553
S882I882IatCatT11AY.99.20.000092
S882I882del1atCat-11B.10.000009
S882I882SaTcaGc11B.10.000009
S882I882MatCatG11B.10.000009
S882I882delATC---11B.1.1.2360.006897
S882I882IatCatT11B.1.1.3080.011765
S882I882delATC---11B.1.1.3110.000358
S882I882delATC---11B.1.1.3120.001912
S882I882IatCatT11B.1.1.3180.000302
S882I882MatCatG11B.1.1.70.000001
S882I882NaTcaAc11B.1.1.70.000001
S882I882del2ATC--N11B.1.1.70.000001
S882I882AATCGCT11B.1.1.70.000001
S882I882FAtcTtc11B.1.1.70.000001
S882I882VAtcGtc11B.1.1770.000013
S882I882LAtcCtc11B.1.1770.000013
S882I882delATC---11B.1.177.100.000878
S882I882delATC---11B.1.177.170.000821
S882I882LAtcCtc11B.1.177.190.001431
S882I882delATC---11B.1.177.210.000076
S882I882delATC---11B.1.177.480.003125
S882I882delATC---11B.1.177.540.000606
S882I882delATC---11B.1.177.560.000668
S882I882IatCatT11B.1.177.570.000281
S882I882delATC---11B.1.177.600.000218
S882I882delATC---11B.1.177.630.002703
S882I882delATC---11B.1.177.870.000728
S882I882delATC---11B.1.1790.003759
S882I882VAtcGtc11B.1.20.000009
S882I882TaTcaCc11B.1.20.000009
S882I882delATC---11B.1.2210.000071
S882I882NaTcaAc11B.1.2210.000071
S882I882IatCatT11B.1.3360.002439
S882I882IatCatT11B.1.3510.00003
S882I882delATC---11B.1.360.000146
S882I882delATC---11B.1.36.170.000494
S882I882delATC---11B.1.36.180.00042
S882I882IatCatT11B.1.4290.000024
S882I882VAtcGtc11B.1.5270.003704
S882I882delATC---11B.1.5770.000687
S882I882IatCatA11B.1.5950.000261
S882I882IatCatT11B.1.5960.000087
S882I882VAtcGtc11B.1.617.20.000004
S882I882del1aTca-c11B.1.617.20.000004
S882I882SaTcaGc11B.1.617.20.000004
S882I882TaTcaCc11B.1.617.20.000004
S882I882IatCatT11B.1.6270.00202
S882I882IatCatT11B.1.6300.005236
S882I882VAtcGtc11B.1.6360.006711
S882I882IatCatA11B.60.00091
S882I882MatCatG11D.20.000075
S882I882IatCatT11D.50.004975
S882I882delATC---11P.1.100.000269
S882I882IatCatT11P.1.130.000898
S882I882delATC---11P.1.130.000898
S882I882delATC---11Q.10.000126
S882I882IatCatT11Q.30.000145
S882I882TaTcaCc11Q.30.000145
S882I882delATC---11Q.80.000165
S882I882delATC---11U.30.003861