CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 880

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S880G880GsynggTggC7527250.96409624200-24202
S880G880GsynggTggA752230.030585124200-24202
S880G880GsynggTggG75240.0053191524200-24202
S880G880deldelGGT---125125124200-24202
S880G880SnonsynGgtAgt2020124200-24202
S880G880VnonsyngGtgTt1717124200-24202
S880G880CnonsynGgtTgt1414124200-24202
S880G880DnonsyngGtgAt44124200-24202
S880G880RnonsynGgtCgt44124200-24202
S880G880AnonsyngGtgCt33124200-24202
S880G880del1delGgT-gN210.524200-24202
S880G880del1delGgt-gt210.524200-24202
S880G880LnonsynGGTTTA11124200-24202
S880G880del2delgGTg--11124200-24202

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S880G880GggTggC725752All0.000139
S880G880GggTggA23752All0.000004
S880G880GggTggG4752All0.000001
S880G880GggTggC362362B.1.4710.989071
S880G880delGGT---125125All0.000024
S880G880GggTggC125125B.1.3510.003716
S880G880GggTggC8383B.1.1.70.000074
S880G880delGGT---4848B.1.1.70.000043
S880G880GggTggA2124AY.430.000093
S880G880GggTggC324AY.430.000013
S880G880SGgtAgt2020All0.000004
S880G880GggTggC2020B.1.4290.000471
S880G880VgGtgTt1717All0.000003
S880G880GggTggC1515AY.440.000091
S880G880CGgtTgt1414All0.000003
S880G880GggTggC1313AY.40.00002
S880G880GggTggC1313B.10.000119
S880G880GggTggC1111B.1.20.000097
S880G880GggTggC99AY.1110.001648
S880G880GggTggC88AY.230.000558
S880G880GggTggC77B.1.1.5190.000278
S880G880GggTggC66AY.1190.000212
S880G880delGGT---66AY.40.000009
S880G880delGGT---66B.1.1770.000079
S880G880GggTggC56B.1.1770.000066
S880G880GggTggG16B.1.1770.000013
S880G880GggTggC66C.370.000696
S880G880GggTggC66P.10.000095
S880G880CGgtTgt55B.10.000046
S880G880VgGtgTt440.222222
S880G880RGgtCgt44All0.000001
S880G880DgGtgAt44All0.000001
S880G880GggTggC44AY.250.000024
S880G880delGGT---44AY.4.50.00043
S880G880delGGT---44AY.430.000018
S880G880delGGT---44B.1.20.000035
S880G880delGGT---44B.1.617.20.000015
S880G880GggTggC44B.1.617.20.000015
S880G880AgGtgCt33All0.000001
S880G880GggTggC33AY.290.000047
S880G880GggTggC13B.1.10.000018
S880G880GggTggA13B.1.10.000018
S880G880GggTggG13B.1.10.000018
S880G880RGgtCgt220.111111
S880G880delGGT---220.111111
S880G880del1Ggt-gt12All0
S880G880del1GgT-gN12All0
S880G880SGgtAgt22AY.1110.000366
S880G880delGGT---22AY.1200.000074
S880G880SGgtAgt22AY.430.000009
S880G880delGGT---22AY.50.000041
S880G880SGgtAgt22AY.98.10.000097
S880G880DgGtgAt22B.10.000018
S880G880delGGT---22B.10.000018
S880G880VgGtgTt22B.10.000018
S880G880delGGT---22B.1.10.000036
S880G880CGgtTgt22B.1.10.000036
S880G880VgGtgTt22B.1.1.70.000002
S880G880delGGT---22B.1.360.000292
S880G880delGGT---22B.1.5260.000047
S880G880CGgtTgt22B.1.5960.000174
S880G880CGgtTgt22B.1.617.20.000008
S880G880delGGT---11A0.000387
S880G880RGgtCgt11A.10.000282
S880G880delGGT---11AH.30.003802
S880G880LGGTTTA11All0
S880G880del2gGTg--11All0
S880G880SGgtAgt11AY.1030.000006
S880G880GggTggC11AY.1080.001103
S880G880delGGT---11AY.1110.000183
S880G880DgGtgAt11AY.1130.000142
S880G880GggTggC11AY.1170.000085
S880G880SGgtAgt11AY.1170.000085
S880G880DgGtgAt11AY.1170.000085
S880G880GggTggC11AY.1180.000063
S880G880AgGtgCt11AY.140.000088
S880G880delGGT---11AY.190.00114
S880G880GggTggC11AY.200.000039
S880G880VgGtgTt11AY.250.000006
S880G880delGGT---11AY.250.000006
S880G880VgGtgTt11AY.270.000065
S880G880GggTggC11AY.30.00001
S880G880GggTggC11AY.340.000097
S880G880GggTggC11AY.350.000233
S880G880delGGT---11AY.360.000148
S880G880GggTggC11AY.390.000025
S880G880AgGtgCt11AY.430.000004
S880G880VgGtgTt11AY.430.000004
S880G880AgGtgCt11AY.440.000006
S880G880delGGT---11AY.440.000006
S880G880GggTggA11AY.450.000122
S880G880delGGT---11AY.460.000104
S880G880CGgtTgt11AY.46.20.000635
S880G880delGGT---11AY.46.20.000635
S880G880GggTggC11AY.46.60.000072
S880G880GggTggC11AY.470.000031
S880G880del1Ggt-gt11AY.520.000814
S880G880delGGT---11AY.670.000464
S880G880delGGT---11AY.720.001361
S880G880GggTggC11AY.75.10.00018
S880G880delGGT---11AY.810.001992
S880G880SGgtAgt11AY.90.000068
S880G880GggTggC11AY.9.10.000084
S880G880VgGtgTt11AY.9.20.000037
S880G880GggTggG11AY.98.10.000048
S880G880delGGT---11AY.990.001049
S880G880delGGT---11AY.99.10.001553
S880G880SGgtAgt11B0.000128
S880G880SGgtAgt11B.10.000009
S880G880SGgtAgt11B.1.10.000018
S880G880GggTggC11B.1.1.10.000327
S880G880SGgtAgt11B.1.1.1860.003436
S880G880VgGtgTt11B.1.1.1940.00495
S880G880GggTggC11B.1.1.2160.00089
S880G880GggTggC11B.1.1.2220.000204
S880G880delGGT---11B.1.1.2360.006897
S880G880GggTggC11B.1.1.2770.000759
S880G880SGgtAgt11B.1.1.3000.010753
S880G880delGGT---11B.1.1.3110.000358
S880G880delGGT---11B.1.1.3120.001912
S880G880CGgtTgt11B.1.1.3690.000446
S880G880VgGtgTt11B.1.1.390.00051
S880G880CGgtTgt11B.1.1.4640.001473
S880G880VgGtgTt11B.1.1.5190.00004
S880G880LGGTTTA11B.1.1.70.000001
S880G880RGgtCgt11B.1.1.70.000001
S880G880del2gGTg--11B.1.1.70.000001
S880G880del1GgT-gN11B.1.1.70.000001
S880G880SGgtAgt11B.1.1.80.003584
S880G880GggTggC11B.1.160.160.000929
S880G880VgGtgTt11B.1.1770.000013
S880G880delGGT---11B.1.177.100.000878
S880G880delGGT---11B.1.177.170.000821
S880G880delGGT---11B.1.177.210.000076
S880G880delGGT---11B.1.177.480.003125
S880G880delGGT---11B.1.177.540.000606
S880G880delGGT---11B.1.177.560.000668
S880G880delGGT---11B.1.177.600.000218
S880G880delGGT---11B.1.177.630.002703
S880G880delGGT---11B.1.177.870.000728
S880G880delGGT---11B.1.1790.003759
S880G880SGgtAgt11B.1.20.000009
S880G880delGGT---11B.1.2210.000071
S880G880SGgtAgt11B.1.2210.000071
S880G880GggTggC11B.1.2210.000071
S880G880GggTggC11B.1.2430.00007
S880G880delGGT---11B.1.2580.000067
S880G880SGgtAgt11B.1.350.008475
S880G880delGGT---11B.1.36.170.000494
S880G880delGGT---11B.1.36.180.00042
S880G880VgGtgTt11B.1.4270.00005
S880G880SGgtAgt11B.1.4270.00005
S880G880GggTggC11B.1.5240.001406
S880G880delGGT---11B.1.5770.000687
S880G880GggTggG11B.1.6090.000479
S880G880GggTggC11B.100.008264
S880G880SGgtAgt11D.20.000075
S880G880delGGT---11P.1.130.000898
S880G880delGGT---11Q.10.000126
S880G880delGGT---11U.30.003861