CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 873 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S873Y873deldelTAC---142142124179-24181

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S873Y873delTAC---142142All0.000027
S873Y873delTAC---5555B.1.1.70.000049
S873Y873delTAC---99AY.40.000014
S873Y873delTAC---99B.1.1770.000119
S873Y873delTAC---66AY.4.50.000645
S873Y873delTAC---44B.1.20.000035
S873Y873delTAC---44B.1.617.20.000015
S873Y873delTAC---33AY.1200.000112
S873Y873delTAC---33AY.430.000013
S873Y873delTAC---22AY.50.000041
S873Y873delTAC---22B.10.000018
S873Y873delTAC---22B.1.10.000036
S873Y873delTAC---22B.1.177.630.005405
S873Y873delTAC---22B.1.360.000292
S873Y873delTAC---22B.1.36.170.000988
S873Y873delTAC---22B.1.5260.000047
S873Y873delTAC---11A0.000387
S873Y873delTAC---11AH.30.003802
S873Y873delTAC---11AY.1110.000183
S873Y873delTAC---11AY.190.00114
S873Y873delTAC---11AY.250.000006
S873Y873delTAC---11AY.360.000148
S873Y873delTAC---11AY.440.000006
S873Y873delTAC---11AY.460.000104
S873Y873delTAC---11AY.46.20.000635
S873Y873delTAC---11AY.520.000814
S873Y873delTAC---11AY.720.001361
S873Y873delTAC---11AY.810.001992
S873Y873delTAC---11AY.990.001049
S873Y873delTAC---11AY.99.10.001553
S873Y873delTAC---11B.1.1.2360.006897
S873Y873delTAC---11B.1.1.3110.000358
S873Y873delTAC---11B.1.1.3120.001912
S873Y873delTAC---11B.1.177.100.000878
S873Y873delTAC---11B.1.177.170.000821
S873Y873delTAC---11B.1.177.180.00116
S873Y873delTAC---11B.1.177.210.000076
S873Y873delTAC---11B.1.177.40.000211
S873Y873delTAC---11B.1.177.480.003125
S873Y873delTAC---11B.1.177.540.000606
S873Y873delTAC---11B.1.177.560.000668
S873Y873delTAC---11B.1.177.580.001332
S873Y873delTAC---11B.1.177.600.000218
S873Y873delTAC---11B.1.1790.003759
S873Y873delTAC---11B.1.2210.000071
S873Y873delTAC---11B.1.2580.000067
S873Y873delTAC---11B.1.36.180.00042
S873Y873delTAC---11B.1.5770.000687
S873Y873delTAC---11P.1.130.000898
S873Y873delTAC---11Q.10.000126
S873Y873delTAC---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.