CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 873

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S873Y873YsyntaCtaT30993099124179-24181
S873Y873deldelTAC---142142124179-24181
S873Y873HnonsynTacCac2020124179-24181
S873Y873CnonsyntActGc66124179-24181
S873Y873del1deltAct-c630.524179-24181
S873Y873del1delTac-ac630.524179-24181
S873Y873del2deltACt--44124179-24181
S873Y873XnonsyntaCtaA420.524179-24181
S873Y873XnonsyntaCtaG420.524179-24181
S873Y873FnonsyntActTc33124179-24181
S873Y873DnonsynTacGac33124179-24181
S873Y873TnonsynTACACT320.66666724179-24181
S873Y873TnonsynTAcACc310.33333324179-24181
S873Y873KnonsynTaCAaG22124179-24181
S873Y873VnonsynTAcGTc11124179-24181
S873Y873SnonsyntActCc11124179-24181
S873Y873QnonsynTaCCaG11124179-24181

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S873Y873YtaCtaT30993099All0.000593
S873Y873YtaCtaT15721572B.1.438.10.168615
S873Y873YtaCtaT733733AY.40.001141
S873Y873delTAC---142142All0.000027
S873Y873YtaCtaT139139AY.30.001383
S873Y873YtaCtaT7070B.1.1.70.000063
S873Y873YtaCtaT6666B.1.5790.741573
S873Y873delTAC---5555B.1.1.70.000049
S873Y873YtaCtaT5353B.10.000485
S873Y873YtaCtaT3636B.1.20.000317
S873Y873YtaCtaT3030AY.9.10.002512
S873Y873YtaCtaT2828B.1.6260.16
S873Y873YtaCtaT2626AY.430.000115
S873Y873YtaCtaT2424AY.250.000144
S873Y873YtaCtaT2323B.1.617.20.000087
S873Y873YtaCtaT2222AY.390.000544
S873Y873HTacCac2020All0.000004
S873Y873YtaCtaT1717B.1.2320.009135
S873Y873YtaCtaT1414AY.200.000544
S873Y873YtaCtaT1313B.1.1.5190.000516
S873Y873YtaCtaT1212AY.1030.000075
S873Y873YtaCtaT1212B.1.4290.000282
S873Y873YtaCtaT1111AY.440.000067
S873Y873YtaCtaT1111B.1.10.0002
S873Y873YtaCtaT1111B.1.1.10.003594
S873Y873delTAC---99AY.40.000014
S873Y873delTAC---99B.1.1770.000119
S873Y873YtaCtaT99B.1.2580.000599
S873Y873YtaCtaT88AY.1170.000676
S873Y873YtaCtaT77B.1.1770.000092
S873Y873YtaCtaT77B.1.6340.023973
S873Y873CtActGc66All0.000001
S873Y873del1Tac-ac36All0.000001
S873Y873del1tAct-c36All0.000001
S873Y873YtaCtaT66AY.160.002278
S873Y873YtaCtaT66AY.3.10.000512
S873Y873delTAC---66AY.4.50.000645
S873Y873YtaCtaT55AY.260.000142
S873Y873YtaCtaT55AY.290.000079
S873Y873YtaCtaT55AY.50.000103
S873Y873YtaCtaT55B.1.2210.000355
S873Y873YtaCtaT55P.10.000079
S873Y873YtaCtaT55R.10.00045
S873Y873del2tACt--44All0.000001
S873Y873XtaCtaG24All0
S873Y873XtaCtaA24All0
S873Y873YtaCtaT44AY.46.40.000658
S873Y873YtaCtaT44AY.530.00115
S873Y873YtaCtaT44AY.7.10.000451
S873Y873delTAC---44B.1.20.000035
S873Y873YtaCtaT44B.1.360.000584
S873Y873delTAC---44B.1.617.20.000015
S873Y873FtActTc33All0.000001
S873Y873DTacGac33All0.000001
S873Y873TTACACT23All0
S873Y873TTAcACc13All0
S873Y873YtaCtaT33AY.1020.00008
S873Y873delTAC---33AY.1200.000112
S873Y873YtaCtaT33AY.230.000209
S873Y873YtaCtaT33AY.340.000291
S873Y873YtaCtaT33AY.420.000121
S873Y873delTAC---33AY.430.000013
S873Y873YtaCtaT33AY.60.000123
S873Y873YtaCtaT33B.1.1.250.001706
S873Y873HTacCac33B.1.1.70.000003
S873Y873XtaCtaG220.111111
S873Y873KTaCAaG220.111111
S873Y873TTACACT220.111111
S873Y873YtaCtaT22A.10.000564
S873Y873KTaCAaG22All0
S873Y873HTacCac22AY.40.000003
S873Y873YtaCtaT22AY.46.60.000144
S873Y873YtaCtaT22AY.470.000062
S873Y873delTAC---22AY.50.000041
S873Y873YtaCtaT22AY.610.00021
S873Y873YtaCtaT22AY.750.000112
S873Y873YtaCtaT22AY.850.000854
S873Y873delTAC---22B.10.000018
S873Y873del1Tac-ac12B.10.000009
S873Y873del1tAct-c12B.10.000009
S873Y873delTAC---22B.1.10.000036
S873Y873HTacCac22B.1.10.000036
S873Y873YtaCtaT22B.1.1.3170.000823
S873Y873del1tAct-c12B.1.1.70.000001
S873Y873del1Tac-ac12B.1.1.70.000001
S873Y873YtaCtaT22B.1.1600.000062
S873Y873YtaCtaT22B.1.177.410.005
S873Y873delTAC---22B.1.177.630.005405
S873Y873YtaCtaT22B.1.2360.004107
S873Y873delTAC---22B.1.360.000292
S873Y873delTAC---22B.1.36.170.000988
S873Y873delTAC---22B.1.5260.000047
S873Y873YtaCtaT22B.1.6210.000177
S873Y873YtaCtaT22B.1.6280.000705
S873Y873delTAC---11A0.000387
S873Y873YtaCtaT11A.2.50.000499
S873Y873YtaCtaT11A.2.5.30.010309
S873Y873YtaCtaT11A.50.001923
S873Y873delTAC---11AH.30.003802
S873Y873VTAcGTc11All0
S873Y873QTaCCaG11All0
S873Y873StActCc11All0
S873Y873YtaCtaT11AY.1000.000046
S873Y873HTacCac11AY.1030.000006
S873Y873YtaCtaT11AY.1070.000466
S873Y873delTAC---11AY.1110.000183
S873Y873YtaCtaT11AY.1180.000063
S873Y873YtaCtaT11AY.120.000316
S873Y873YtaCtaT11AY.1210.000135
S873Y873delTAC---11AY.190.00114
S873Y873delTAC---11AY.250.000006
S873Y873HTacCac11AY.250.000006
S873Y873YtaCtaT11AY.270.000065
S873Y873YtaCtaT11AY.320.000532
S873Y873YtaCtaT11AY.330.000067
S873Y873delTAC---11AY.360.000148
S873Y873HTacCac11AY.390.000025
S873Y873FtActTc11AY.40.000002
S873Y873YtaCtaT11AY.4.2.10.000149
S873Y873YtaCtaT11AY.4.40.000409
S873Y873YtaCtaT11AY.4.50.000107
S873Y873YtaCtaT11AY.410.000294
S873Y873HTacCac11AY.430.000004
S873Y873del2tACt--11AY.440.000006
S873Y873delTAC---11AY.440.000006
S873Y873YtaCtaT11AY.450.000122
S873Y873delTAC---11AY.460.000104
S873Y873delTAC---11AY.46.20.000635
S873Y873HTacCac11AY.470.000031
S873Y873YtaCtaT11AY.510.000909
S873Y873delTAC---11AY.520.000814
S873Y873HTacCac11AY.550.000917
S873Y873YtaCtaT11AY.550.000917
S873Y873YtaCtaT11AY.580.000907
S873Y873YtaCtaT11AY.650.000533
S873Y873HTacCac11AY.670.000464
S873Y873delTAC---11AY.720.001361
S873Y873YtaCtaT11AY.760.004831
S873Y873YtaCtaT11AY.790.001211
S873Y873delTAC---11AY.810.001992
S873Y873CtActGc11AY.850.000427
S873Y873HTacCac11AY.9.20.000037
S873Y873CtActGc11AY.9.20.000037
S873Y873YtaCtaT11AY.930.000273
S873Y873YtaCtaT11AY.940.000443
S873Y873delTAC---11AY.990.001049
S873Y873delTAC---11AY.99.10.001553
S873Y873DTacGac11B.10.000009
S873Y873HTacCac11B.10.000009
S873Y873FtActTc11B.10.000009
S873Y873CtActGc11B.1.10.000018
S873Y873DTacGac11B.1.10.000018
S873Y873HTacCac11B.1.1.2140.000055
S873Y873delTAC---11B.1.1.2360.006897
S873Y873YtaCtaT11B.1.1.2580.003257
S873Y873YtaCtaT11B.1.1.280.000311
S873Y873delTAC---11B.1.1.3110.000358
S873Y873delTAC---11B.1.1.3120.001912
S873Y873YtaCtaT11B.1.1.3260.001761
S873Y873YtaCtaT11B.1.1.370.000193
S873Y873YtaCtaT11B.1.1.3740.002375
S873Y873TTAcACc11B.1.1.70.000001
S873Y873QTaCCaG11B.1.1.70.000001
S873Y873DTacGac11B.1.1.70.000001
S873Y873VTAcGTc11B.1.1.70.000001
S873Y873del2tACt--11B.1.160.160.000929
S873Y873YtaCtaT11B.1.160.70.002079
S873Y873delTAC---11B.1.177.100.000878
S873Y873delTAC---11B.1.177.170.000821
S873Y873delTAC---11B.1.177.180.00116
S873Y873delTAC---11B.1.177.210.000076
S873Y873delTAC---11B.1.177.40.000211
S873Y873YtaCtaT11B.1.177.440.000519
S873Y873delTAC---11B.1.177.480.003125
S873Y873delTAC---11B.1.177.540.000606
S873Y873delTAC---11B.1.177.560.000668
S873Y873delTAC---11B.1.177.580.001332
S873Y873delTAC---11B.1.177.600.000218
S873Y873YtaCtaT11B.1.177.600.000218
S873Y873YtaCtaT11B.1.177.870.000728
S873Y873delTAC---11B.1.1790.003759
S873Y873HTacCac11B.1.20.000009
S873Y873YtaCtaT11B.1.214.20.0006
S873Y873delTAC---11B.1.2210.000071
S873Y873del2tACt--11B.1.2340.000132
S873Y873delTAC---11B.1.2580.000067
S873Y873HTacCac11B.1.3380.008621
S873Y873delTAC---11B.1.36.180.00042
S873Y873YtaCtaT11B.1.3910.001127
S873Y873YtaCtaT11B.1.4360.001029
S873Y873FtActTc11B.1.5260.000024
S873Y873CtActGc11B.1.5260.000024
S873Y873YtaCtaT11B.1.5260.000024
S873Y873YtaCtaT11B.1.5650.00081
S873Y873delTAC---11B.1.5770.000687
S873Y873del2tACt--11B.1.5820.000491
S873Y873YtaCtaT11B.1.5950.000261
S873Y873CtActGc11B.1.5960.000087
S873Y873YtaCtaT11B.1.617.10.000129
S873Y873HTacCac11B.1.617.20.000004
S873Y873XtaCtaA11B.1.617.20.000004
S873Y873StActCc11B.1.617.20.000004
S873Y873YtaCtaT11B.1.6180.004032
S873Y873CtActGc11B.1.6370.000073
S873Y873YtaCtaT11C.360.000911
S873Y873XtaCtaA11D.20.000075
S873Y873YtaCtaT11D.50.004975
S873Y873delTAC---11P.1.130.000898
S873Y873del1tAct-c11P.1.140.000048
S873Y873YtaCtaT11P.1.170.000162
S873Y873delTAC---11Q.10.000126
S873Y873del1Tac-ac11Q.10.000126
S873Y873YtaCtaT11Q.70.001111
S873Y873delTAC---11U.30.003861