CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 871 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S871A871SnonsynGctTct17341734124173-24175

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S871A871SGctTct17341734All0.000332
S871A871SGctTct480480AY.40.000747
S871A871SGctTct321321B.1.1.70.000287
S871A871SGctTct8888B.1.617.20.000331
S871A871SGctTct8080AY.1030.000497
S871A871SGctTct5757AY.290.000899
S871A871SGctTct5353AY.430.000235
S871A871SGctTct3737B.1.177.70.0061
S871A871SGctTct3232AY.270.002071
S871A871SGctTct2828AY.250.000168
S871A871SGctTct2626AY.260.000736
S871A871SGctTct2626AY.3.10.002217
S871A871SGctTct2525B.10.000229
S871A871SGctTct2323AY.440.00014
S871A871SGctTct1919B.1.1770.00025
S871A871SGctTct1919B.1.20.000167
S871A871SGctTct1818AY.30.000179
S871A871SGctTct1717P.10.000268
S871A871SGctTct1616AY.840.006999
S871A871SGctTct1414AY.1020.000371
S871A871SGctTct1414B.1.5260.000329
S871A871SGctTct1313B.1.177.870.009461
S871A871SGctTct1111AY.50.000227
S871A871SGctTct1111C.36.30.006239
S871A871SGctTct1010AY.200.000389
S871A871SGctTct1010AY.390.000247
S871A871SGctTct1010B.1.10.000181
S871A871SGctTct1010B.1.1.2140.000555
S871A871SGctTct1010P.1.170.001618
S871A871SGctTct88AY.116.10.002491
S871A871SGctTct77B.1.1600.000218
S871A871SGctTct77B.1.6310.023569
S871A871SGctTct77P.1.10.002224
S871A871SGctTct66AY.420.000241
S871A871SGctTct66AY.470.000187
S871A871SGctTct66B.1.3690.001711
S871A871SGctTct66B.1.5960.000523
S871A871SGctTct55AY.230.000349
S871A871SGctTct55AY.540.000477
S871A871SGctTct55B.1.3510.000149
S871A871SGctTct55B.1.360.00073
S871A871SGctTct55P.1.140.000239
S871A871SGctTct44AY.300.001583
S871A871SGctTct44AY.610.000419
S871A871SGctTct44B.1.177.240.005181
S871A871SGctTct44B.1.177.540.002426
S871A871SGctTct44B.1.6370.000292
S871A871SGctTct33A.2.50.001497
S871A871SGctTct33AY.1000.000138
S871A871SGctTct33AY.1060.001005
S871A871SGctTct33AY.1190.000106
S871A871SGctTct33AY.120.000948
S871A871SGctTct33AY.330.0002
S871A871SGctTct33AY.340.000291
S871A871SGctTct33AY.39.10.000119
S871A871SGctTct33AY.4.20.000065
S871A871SGctTct33AY.620.001307
S871A871SGctTct33AY.7.10.000338
S871A871SGctTct33AY.9.20.00011
S871A871SGctTct33AY.98.10.000145
S871A871SGctTct33AZ.30.004559
S871A871SGctTct33B.1.160.70.006237
S871A871SGctTct33B.1.4290.000071
S871A871SGctTct33B.1.6210.000266
S871A871SGctTct33B.1.6250.007059
S871A871SGctTct33Q.30.000435
S871A871SGctTct22AY.1160.000574
S871A871SGctTct22AY.1200.000074
S871A871SGctTct22AY.1210.000271
S871A871SGctTct22AY.130.000322
S871A871SGctTct22AY.29.10.000441
S871A871SGctTct22AY.4.50.000215
S871A871SGctTct22AY.46.20.001271
S871A871SGctTct22AY.520.001629
S871A871SGctTct22AY.90.000135
S871A871SGctTct22B.1.1.2220.000408
S871A871SGctTct22B.1.1.2440.030769
S871A871SGctTct22B.1.1.280.000622
S871A871SGctTct22B.1.1.4480.004065
S871A871SGctTct22B.1.177.170.001642
S871A871SGctTct22B.1.36.290.001035
S871A871SGctTct22B.1.36.380.003284
S871A871SGctTct22B.1.466.20.000782
S871A871SGctTct22B.1.5250.000226
S871A871SGctTct22B.1.617.10.000258
S871A871SGctTct22D.20.00015
S871A871SGctTct11A.2.40.003367
S871A871SGctTct11AD.20.000219
S871A871SGctTct11AY.1070.000466
S871A871SGctTct11AY.1110.000183
S871A871SGctTct11AY.1170.000085
S871A871SGctTct11AY.140.000088
S871A871SGctTct11AY.16.10.00047
S871A871SGctTct11AY.20.000356
S871A871SGctTct11AY.23.10.000417
S871A871SGctTct11AY.370.000316
S871A871SGctTct11AY.4.2.10.000149
S871A871SGctTct11AY.410.000294
S871A871SGctTct11AY.460.000104
S871A871SGctTct11AY.46.60.000072
S871A871SGctTct11AY.570.000656
S871A871SGctTct11AY.60.000041
S871A871SGctTct11AY.690.000187
S871A871SGctTct11AY.70.000196
S871A871SGctTct11AY.740.000116
S871A871SGctTct11AY.75.10.00018
S871A871SGctTct11AY.9.10.000084
S871A871SGctTct11AY.950.000761
S871A871SGctTct11AY.99.10.001553
S871A871SGctTct11AZ.20.000821
S871A871SGctTct11B0.000128
S871A871SGctTct11B.1.1.1710.003676
S871A871SGctTct11B.1.1.1740.003378
S871A871SGctTct11B.1.1.2890.002083
S871A871SGctTct11B.1.1.2940.001266
S871A871SGctTct11B.1.1.2980.000862
S871A871SGctTct11B.1.1.3260.001761
S871A871SGctTct11B.1.1.330.000421
S871A871SGctTct11B.1.1.3310.011628
S871A871SGctTct11B.1.1.3480.000796
S871A871SGctTct11B.1.1.3580.034483
S871A871SGctTct11B.1.1.370.000193
S871A871SGctTct11B.1.1.4320.001266
S871A871SGctTct11B.1.1.500.000679
S871A871SGctTct11B.1.1.5070.008696
S871A871SGctTct11B.1.1.5190.00004
S871A871SGctTct11B.1.1.700.000341
S871A871SGctTct11B.1.1420.002899
S871A871SGctTct11B.1.177.410.0025
S871A871SGctTct11B.1.177.430.001477
S871A871SGctTct11B.1.177.480.003125
S871A871SGctTct11B.1.177.80.000752
S871A871SGctTct11B.1.177.860.000183
S871A871SGctTct11B.1.2060.000816
S871A871SGctTct11B.1.2210.000071
S871A871SGctTct11B.1.2320.000537
S871A871SGctTct11B.1.2340.000132
S871A871SGctTct11B.1.3110.000275
S871A871SGctTct11B.1.3200.001245
S871A871SGctTct11B.1.351.20.000303
S871A871SGctTct11B.1.5650.00081
S871A871SGctTct11B.1.5750.000303
S871A871SGctTct11B.1.595.20.04
S871A871SGctTct11B.1.619.10.000641
S871A871SGctTct11B.490.05
S871A871SGctTct11P.1.150.000232
S871A871SGctTct11P.1.80.004785

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.