CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 871 | A871A | syn | gcT | gcC | 1964 | 1782 | 0.907332 | 24173-24175 | |
S | 871 | A871A | syn | gcT | gcA | 1964 | 93 | 0.0473523 | 24173-24175 | |
S | 871 | A871A | syn | gcT | gcG | 1964 | 89 | 0.0453157 | 24173-24175 | |
S | 871 | A871S | nonsyn | Gct | Tct | 1734 | 1734 | 1 | 24173-24175 | |
S | 871 | A871V | nonsyn | gCt | gTt | 1188 | 1188 | 1 | 24173-24175 | |
S | 871 | A871del | del | GCT | --- | 144 | 144 | 1 | 24173-24175 | |
S | 871 | A871T | nonsyn | Gct | Act | 83 | 81 | 0.975904 | 24173-24175 | |
S | 871 | A871T | nonsyn | GcT | AcA | 83 | 2 | 0.0240964 | 24173-24175 | |
S | 871 | A871P | nonsyn | Gct | Cct | 13 | 13 | 1 | 24173-24175 | |
S | 871 | A871G | nonsyn | gCt | gGt | 12 | 11 | 0.916667 | 24173-24175 | |
S | 871 | A871G | nonsyn | gCT | gGA | 12 | 1 | 0.0833333 | 24173-24175 | |
S | 871 | A871D | nonsyn | gCt | gAt | 9 | 9 | 1 | 24173-24175 | |
S | 871 | A871del2 | del | gCT | g-- | 3 | 1 | 0.333333 | 24173-24175 | |
S | 871 | A871del2 | del | GCT | --C | 3 | 1 | 0.333333 | 24173-24175 | |
S | 871 | A871del2 | del | GCt | --t | 3 | 1 | 0.333333 | 24173-24175 | |
S | 871 | A871L | nonsyn | GCt | CTt | 2 | 2 | 1 | 24173-24175 | |
S | 871 | A871del1 | del | Gct | -ct | 2 | 2 | 1 | 24173-24175 | |
S | 871 | A871C | nonsyn | GCT | TGC | 2 | 2 | 1 | 24173-24175 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 871 | A871A | gcT | gcC | 1782 | 1964 | All | 0.000341 |
S | 871 | A871A | gcT | gcA | 93 | 1964 | All | 0.000018 |
S | 871 | A871A | gcT | gcG | 89 | 1964 | All | 0.000017 |
S | 871 | A871S | Gct | Tct | 1734 | 1734 | All | 0.000332 |
S | 871 | A871A | gcT | gcC | 1310 | 1310 | B.1.36.27 | 1 |
S | 871 | A871V | gCt | gTt | 1188 | 1188 | All | 0.000227 |
S | 871 | A871S | Gct | Tct | 480 | 480 | AY.4 | 0.000747 |
S | 871 | A871V | gCt | gTt | 379 | 379 | B.1.1.7 | 0.000339 |
S | 871 | A871S | Gct | Tct | 321 | 321 | B.1.1.7 | 0.000287 |
S | 871 | A871A | gcT | gcC | 251 | 251 | B.1.36 | 0.036621 |
S | 871 | A871V | gCt | gTt | 177 | 177 | B.1.2 | 0.001559 |
S | 871 | A871del | GCT | --- | 144 | 144 | All | 0.000028 |
S | 871 | A871A | gcT | gcC | 70 | 103 | B.1.1.7 | 0.000063 |
S | 871 | A871A | gcT | gcG | 25 | 103 | B.1.1.7 | 0.000022 |
S | 871 | A871A | gcT | gcA | 8 | 103 | B.1.1.7 | 0.000007 |
S | 871 | A871V | gCt | gTt | 99 | 99 | AY.4 | 0.000154 |
S | 871 | A871S | Gct | Tct | 88 | 88 | B.1.617.2 | 0.000331 |
S | 871 | A871T | Gct | Act | 81 | 83 | All | 0.000015 |
S | 871 | A871T | GcT | AcA | 2 | 83 | All | 0 |
S | 871 | A871S | Gct | Tct | 80 | 80 | AY.103 | 0.000497 |
S | 871 | A871S | Gct | Tct | 57 | 57 | AY.29 | 0.000899 |
S | 871 | A871T | Gct | Act | 57 | 57 | B.1.1.7 | 0.000051 |
S | 871 | A871del | GCT | --- | 55 | 55 | B.1.1.7 | 0.000049 |
S | 871 | A871S | Gct | Tct | 53 | 53 | AY.43 | 0.000235 |
S | 871 | A871V | gCt | gTt | 45 | 45 | AY.43 | 0.000199 |
S | 871 | A871A | gcT | gcA | 44 | 44 | AY.13 | 0.007083 |
S | 871 | A871A | gcT | gcC | 43 | 44 | B.1.617.2 | 0.000162 |
S | 871 | A871A | gcT | gcG | 1 | 44 | B.1.617.2 | 0.000004 |
S | 871 | A871S | Gct | Tct | 37 | 37 | B.1.177.7 | 0.0061 |
S | 871 | A871A | gcT | gcG | 36 | 37 | B.1.2 | 0.000317 |
S | 871 | A871A | gcT | gcC | 1 | 37 | B.1.2 | 0.000009 |
S | 871 | A871S | Gct | Tct | 32 | 32 | AY.27 | 0.002071 |
S | 871 | A871V | gCt | gTt | 30 | 30 | B.1.617.2 | 0.000113 |
S | 871 | A871S | Gct | Tct | 28 | 28 | AY.25 | 0.000168 |
S | 871 | A871S | Gct | Tct | 26 | 26 | AY.26 | 0.000736 |
S | 871 | A871S | Gct | Tct | 26 | 26 | AY.3.1 | 0.002217 |
S | 871 | A871S | Gct | Tct | 25 | 25 | B.1 | 0.000229 |
S | 871 | A871V | gCt | gTt | 25 | 25 | B.1.177 | 0.000329 |
S | 871 | A871V | gCt | gTt | 24 | 24 | AY.6 | 0.000987 |
S | 871 | A871A | gcT | gcA | 23 | 23 | AY.29.1 | 0.005072 |
S | 871 | A871S | Gct | Tct | 23 | 23 | AY.44 | 0.00014 |
S | 871 | A871S | Gct | Tct | 19 | 19 | B.1.177 | 0.00025 |
S | 871 | A871S | Gct | Tct | 19 | 19 | B.1.2 | 0.000167 |
S | 871 | A871V | gCt | gTt | 18 | 18 | AY.25 | 0.000108 |
S | 871 | A871S | Gct | Tct | 18 | 18 | AY.3 | 0.000179 |
S | 871 | A871V | gCt | gTt | 18 | 18 | B.1.1.176 | 0.007909 |
S | 871 | A871V | gCt | gTt | 17 | 17 | AY.100 | 0.000782 |
S | 871 | A871V | gCt | gTt | 17 | 17 | AY.44 | 0.000103 |
S | 871 | A871S | Gct | Tct | 17 | 17 | P.1 | 0.000268 |
S | 871 | A871V | gCt | gTt | 16 | 16 | AY.103 | 0.000099 |
S | 871 | A871S | Gct | Tct | 16 | 16 | AY.84 | 0.006999 |
S | 871 | A871A | gcT | gcC | 14 | 15 | AY.43 | 0.000062 |
S | 871 | A871A | gcT | gcG | 1 | 15 | AY.43 | 0.000004 |
S | 871 | A871A | gcT | gcA | 15 | 15 | P.1.15 | 0.003485 |
S | 871 | A871S | Gct | Tct | 14 | 14 | AY.102 | 0.000371 |
S | 871 | A871S | Gct | Tct | 14 | 14 | B.1.526 | 0.000329 |
S | 871 | A871P | Gct | Cct | 13 | 13 | All | 0.000002 |
S | 871 | A871A | gcT | gcC | 11 | 13 | AY.4 | 0.000017 |
S | 871 | A871A | gcT | gcG | 2 | 13 | AY.4 | 0.000003 |
S | 871 | A871S | Gct | Tct | 13 | 13 | B.1.177.87 | 0.009461 |
S | 871 | A871G | gCt | gGt | 11 | 12 | All | 0.000002 |
S | 871 | A871G | gCT | gGA | 1 | 12 | All | 0 |
S | 871 | A871V | gCt | gTt | 12 | 12 | B.1.429 | 0.000282 |
S | 871 | A871V | gCt | gTt | 11 | 11 | AY.4.5 | 0.001182 |
S | 871 | A871S | Gct | Tct | 11 | 11 | AY.5 | 0.000227 |
S | 871 | A871V | gCt | gTt | 11 | 11 | B.1 | 0.000101 |
S | 871 | A871del | GCT | --- | 11 | 11 | B.1.177 | 0.000145 |
S | 871 | A871S | Gct | Tct | 11 | 11 | C.36.3 | 0.006239 |
S | 871 | A871S | Gct | Tct | 10 | 10 | AY.20 | 0.000389 |
S | 871 | A871A | gcT | gcC | 10 | 10 | AY.25 | 0.00006 |
S | 871 | A871S | Gct | Tct | 10 | 10 | AY.39 | 0.000247 |
S | 871 | A871V | gCt | gTt | 10 | 10 | AY.4.2 | 0.000217 |
S | 871 | A871V | gCt | gTt | 10 | 10 | B.1.1 | 0.000181 |
S | 871 | A871S | Gct | Tct | 10 | 10 | B.1.1 | 0.000181 |
S | 871 | A871V | gCt | gTt | 10 | 10 | B.1.1.159 | 0.046729 |
S | 871 | A871S | Gct | Tct | 10 | 10 | B.1.1.214 | 0.000555 |
S | 871 | A871V | gCt | gTt | 10 | 10 | B.1.1.28 | 0.003112 |
S | 871 | A871S | Gct | Tct | 10 | 10 | P.1.17 | 0.001618 |
S | 871 | A871D | gCt | gAt | 9 | 9 | All | 0.000002 |
S | 871 | A871V | gCt | gTt | 9 | 9 | B.1.160 | 0.000281 |
S | 871 | A871V | gCt | gTt | 9 | 9 | B.1.351 | 0.000268 |
S | 871 | A871S | Gct | Tct | 8 | 8 | AY.116.1 | 0.002491 |
S | 871 | A871del | GCT | --- | 8 | 8 | AY.4 | 0.000012 |
S | 871 | A871V | gCt | gTt | 8 | 8 | B.1.526 | 0.000188 |
S | 871 | A871A | gcT | gcC | 7 | 7 | AD.2 | 0.001533 |
S | 871 | A871A | gcT | gcC | 7 | 7 | AY.103 | 0.000043 |
S | 871 | A871V | gCt | gTt | 7 | 7 | AY.39 | 0.000173 |
S | 871 | A871V | gCt | gTt | 7 | 7 | AY.98.1 | 0.000339 |
S | 871 | A871S | Gct | Tct | 7 | 7 | B.1.160 | 0.000218 |
S | 871 | A871V | gCt | gTt | 7 | 7 | B.1.258.17 | 0.000728 |
S | 871 | A871S | Gct | Tct | 7 | 7 | B.1.631 | 0.023569 |
S | 871 | A871S | Gct | Tct | 7 | 7 | P.1.1 | 0.002224 |
S | 871 | A871del | GCT | --- | 6 | 6 | AY.4.5 | 0.000645 |
S | 871 | A871S | Gct | Tct | 6 | 6 | AY.42 | 0.000241 |
S | 871 | A871T | Gct | Act | 6 | 6 | AY.43 | 0.000027 |
S | 871 | A871S | Gct | Tct | 6 | 6 | AY.47 | 0.000187 |
S | 871 | A871V | gCt | gTt | 6 | 6 | B.1.1.284 | 0.000644 |
S | 871 | A871V | gCt | gTt | 6 | 6 | B.1.1.329 | 0.023077 |
S | 871 | A871V | gCt | gTt | 6 | 6 | B.1.243 | 0.000418 |
S | 871 | A871S | Gct | Tct | 6 | 6 | B.1.369 | 0.001711 |
S | 871 | A871A | gcT | gcG | 6 | 6 | B.1.499.1 | 0.666667 |
S | 871 | A871S | Gct | Tct | 6 | 6 | B.1.596 | 0.000523 |
S | 871 | A871V | gCt | gTt | 6 | 6 | P.1 | 0.000095 |
S | 871 | A871V | gCt | gTt | 5 | 5 | AY.20 | 0.000194 |
S | 871 | A871S | Gct | Tct | 5 | 5 | AY.23 | 0.000349 |
S | 871 | A871S | Gct | Tct | 5 | 5 | AY.54 | 0.000477 |
S | 871 | A871D | gCt | gAt | 5 | 5 | B.1 | 0.000046 |
S | 871 | A871V | gCt | gTt | 5 | 5 | B.1.1.214 | 0.000277 |
S | 871 | A871S | Gct | Tct | 5 | 5 | B.1.351 | 0.000149 |
S | 871 | A871S | Gct | Tct | 5 | 5 | B.1.36 | 0.00073 |
S | 871 | A871V | gCt | gTt | 5 | 5 | B.1.366 | 0.02439 |
S | 871 | A871V | gCt | gTt | 5 | 5 | B.1.400 | 0.002145 |
S | 871 | A871V | gCt | gTt | 5 | 5 | C.37 | 0.00058 |
S | 871 | A871S | Gct | Tct | 5 | 5 | P.1.14 | 0.000239 |
S | 871 | A871V | gCt | gTt | 4 | 4 | AY.119 | 0.000141 |
S | 871 | A871V | gCt | gTt | 4 | 4 | AY.26 | 0.000113 |
S | 871 | A871V | gCt | gTt | 4 | 4 | AY.29 | 0.000063 |
S | 871 | A871S | Gct | Tct | 4 | 4 | AY.30 | 0.001583 |
S | 871 | A871A | gcT | gcC | 4 | 4 | AY.44 | 0.000024 |
S | 871 | A871V | gCt | gTt | 4 | 4 | AY.5 | 0.000083 |
S | 871 | A871S | Gct | Tct | 4 | 4 | AY.61 | 0.000419 |
S | 871 | A871A | gcT | gcC | 4 | 4 | B.1 | 0.000037 |
S | 871 | A871S | Gct | Tct | 4 | 4 | B.1.177.24 | 0.005181 |
S | 871 | A871V | gCt | gTt | 4 | 4 | B.1.177.32 | 0.005398 |
S | 871 | A871S | Gct | Tct | 4 | 4 | B.1.177.54 | 0.002426 |
S | 871 | A871del | GCT | --- | 4 | 4 | B.1.2 | 0.000035 |
S | 871 | A871A | gcT | gcC | 4 | 4 | B.1.260 | 0.013378 |
S | 871 | A871A | gcT | gcC | 4 | 4 | B.1.468 | 0.022857 |
S | 871 | A871A | gcT | gcG | 4 | 4 | B.1.499 | 0.004202 |
S | 871 | A871V | gCt | gTt | 4 | 4 | B.1.517 | 0.001708 |
S | 871 | A871del | GCT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
S | 871 | A871S | Gct | Tct | 4 | 4 | B.1.637 | 0.000292 |
S | 871 | A871S | Gct | Tct | 3 | 3 | A.2.5 | 0.001497 |
S | 871 | A871del2 | gCT | g-- | 1 | 3 | All | 0 |
S | 871 | A871del2 | GCt | --t | 1 | 3 | All | 0 |
S | 871 | A871del2 | GCT | --C | 1 | 3 | All | 0 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AY.100 | 0.000138 |
S | 871 | A871A | gcT | gcC | 3 | 3 | AY.101 | 0.001471 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AY.106 | 0.001005 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AY.119 | 0.000106 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AY.12 | 0.000948 |
S | 871 | A871del | GCT | --- | 3 | 3 | AY.120 | 0.000112 |
S | 871 | A871V | gCt | gTt | 3 | 3 | AY.120 | 0.000112 |
S | 871 | A871V | gCt | gTt | 3 | 3 | AY.121 | 0.000406 |
S | 871 | A871T | Gct | Act | 3 | 3 | AY.29 | 0.000047 |
S | 871 | A871V | gCt | gTt | 3 | 3 | AY.3 | 0.00003 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AY.33 | 0.0002 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AY.34 | 0.000291 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AY.39.1 | 0.000119 |
S | 871 | A871G | gCt | gGt | 3 | 3 | AY.4 | 0.000005 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AY.4.2 | 0.000065 |
S | 871 | A871G | gCt | gGt | 3 | 3 | AY.4.2 | 0.000065 |
S | 871 | A871del | GCT | --- | 3 | 3 | AY.43 | 0.000013 |
S | 871 | A871V | gCt | gTt | 3 | 3 | AY.47 | 0.000093 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AY.62 | 0.001307 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AY.7.1 | 0.000338 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AY.9.2 | 0.00011 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AY.98.1 | 0.000145 |
S | 871 | A871V | gCt | gTt | 3 | 3 | AZ.2 | 0.002463 |
S | 871 | A871S | Gct | Tct | 3 | 3 | AZ.3 | 0.004559 |
S | 871 | A871A | gcT | gcC | 2 | 3 | B.1.1 | 0.000036 |
S | 871 | A871A | gcT | gcA | 1 | 3 | B.1.1 | 0.000018 |
S | 871 | A871A | gcT | gcC | 3 | 3 | B.1.160 | 0.000094 |
S | 871 | A871S | Gct | Tct | 3 | 3 | B.1.160.7 | 0.006237 |
S | 871 | A871V | gCt | gTt | 3 | 3 | B.1.234 | 0.000396 |
S | 871 | A871V | gCt | gTt | 3 | 3 | B.1.334 | 0.054545 |
S | 871 | A871S | Gct | Tct | 3 | 3 | B.1.429 | 0.000071 |
S | 871 | A871S | Gct | Tct | 3 | 3 | B.1.621 | 0.000266 |
S | 871 | A871S | Gct | Tct | 3 | 3 | B.1.625 | 0.007059 |
S | 871 | A871V | gCt | gTt | 3 | 3 | P.2 | 0.00056 |
S | 871 | A871S | Gct | Tct | 3 | 3 | Q.3 | 0.000435 |
S | 871 | A871C | GCT | TGC | 2 | 2 | 0.111111 | |
S | 871 | A871T | GcT | AcA | 2 | 2 | 0.111111 | |
S | 871 | A871A | gcT | gcG | 2 | 2 | A.1 | 0.000564 |
S | 871 | A871C | GCT | TGC | 2 | 2 | All | 0 |
S | 871 | A871del1 | Gct | -ct | 2 | 2 | All | 0 |
S | 871 | A871L | GCt | CTt | 2 | 2 | All | 0 |
S | 871 | A871V | gCt | gTt | 2 | 2 | AY.102 | 0.000053 |
S | 871 | A871V | gCt | gTt | 2 | 2 | AY.113 | 0.000285 |
S | 871 | A871S | Gct | Tct | 2 | 2 | AY.116 | 0.000574 |
S | 871 | A871S | Gct | Tct | 2 | 2 | AY.120 | 0.000074 |
S | 871 | A871S | Gct | Tct | 2 | 2 | AY.121 | 0.000271 |
S | 871 | A871S | Gct | Tct | 2 | 2 | AY.13 | 0.000322 |
S | 871 | A871A | gcT | gcC | 2 | 2 | AY.2 | 0.000712 |
S | 871 | A871S | Gct | Tct | 2 | 2 | AY.29.1 | 0.000441 |
S | 871 | A871A | gcT | gcC | 2 | 2 | AY.3 | 0.00002 |
S | 871 | A871A | gcT | gcC | 2 | 2 | AY.39 | 0.000049 |
S | 871 | A871S | Gct | Tct | 2 | 2 | AY.4.5 | 0.000215 |
S | 871 | A871A | gcT | gcC | 2 | 2 | AY.46 | 0.000208 |
S | 871 | A871S | Gct | Tct | 2 | 2 | AY.46.2 | 0.001271 |
S | 871 | A871del | GCT | --- | 2 | 2 | AY.5 | 0.000041 |
S | 871 | A871S | Gct | Tct | 2 | 2 | AY.52 | 0.001629 |
S | 871 | A871V | gCt | gTt | 2 | 2 | AY.53 | 0.000575 |
S | 871 | A871V | gCt | gTt | 2 | 2 | AY.62 | 0.000871 |
S | 871 | A871S | Gct | Tct | 2 | 2 | AY.9 | 0.000135 |
S | 871 | A871A | gcT | gcC | 2 | 2 | AY.9.1 | 0.000167 |
S | 871 | A871del | GCT | --- | 2 | 2 | B.1 | 0.000018 |
S | 871 | A871P | Gct | Cct | 2 | 2 | B.1 | 0.000018 |
S | 871 | A871del | GCT | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 871 | A871S | Gct | Tct | 2 | 2 | B.1.1.222 | 0.000408 |
S | 871 | A871S | Gct | Tct | 2 | 2 | B.1.1.244 | 0.030769 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.1.25 | 0.001137 |
S | 871 | A871A | gcT | gcG | 2 | 2 | B.1.1.263 | 0.003115 |
S | 871 | A871S | Gct | Tct | 2 | 2 | B.1.1.28 | 0.000622 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.1.312 | 0.003824 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.1.317 | 0.000823 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.1.39 | 0.001019 |
S | 871 | A871S | Gct | Tct | 2 | 2 | B.1.1.448 | 0.004065 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.1.519 | 0.000079 |
S | 871 | A871A | gcT | gcC | 2 | 2 | B.1.1.519 | 0.000079 |
S | 871 | A871S | Gct | Tct | 2 | 2 | B.1.177.17 | 0.001642 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.177.45 | 0.000762 |
S | 871 | A871del | GCT | --- | 2 | 2 | B.1.177.63 | 0.005405 |
S | 871 | A871T | Gct | Act | 2 | 2 | B.1.2 | 0.000018 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.221 | 0.000142 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.36 | 0.000292 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.36.1 | 0.002281 |
S | 871 | A871A | gcT | gcC | 2 | 2 | B.1.36.16 | 0.002849 |
S | 871 | A871del | GCT | --- | 2 | 2 | B.1.36.17 | 0.000988 |
S | 871 | A871S | Gct | Tct | 2 | 2 | B.1.36.29 | 0.001035 |
S | 871 | A871S | Gct | Tct | 2 | 2 | B.1.36.38 | 0.003284 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.361 | 0.002577 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.427 | 0.000101 |
S | 871 | A871S | Gct | Tct | 2 | 2 | B.1.466.2 | 0.000782 |
S | 871 | A871A | gcT | gcC | 2 | 2 | B.1.497 | 0.00063 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.523 | 0.004902 |
S | 871 | A871S | Gct | Tct | 2 | 2 | B.1.525 | 0.000226 |
S | 871 | A871del | GCT | --- | 2 | 2 | B.1.526 | 0.000047 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.551 | 0.002581 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.564.1 | 0.003155 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.577 | 0.001375 |
S | 871 | A871S | Gct | Tct | 2 | 2 | B.1.617.1 | 0.000258 |
S | 871 | A871P | Gct | Cct | 2 | 2 | B.1.617.2 | 0.000008 |
S | 871 | A871T | Gct | Act | 2 | 2 | B.1.617.2 | 0.000008 |
S | 871 | A871V | gCt | gTt | 2 | 2 | B.1.621.1 | 0.001012 |
S | 871 | A871V | gCt | gTt | 2 | 2 | C.2.1 | 0.013333 |
S | 871 | A871S | Gct | Tct | 2 | 2 | D.2 | 0.00015 |
S | 871 | A871del | GCT | --- | 2 | 2 | Q.1 | 0.000253 |
S | 871 | A871V | gCt | gTt | 2 | 2 | Q.2 | 0.001227 |
S | 871 | A871V | gCt | gTt | 2 | 2 | Q.8 | 0.00033 |
S | 871 | A871V | gCt | gTt | 2 | 2 | R.1 | 0.00018 |
S | 871 | A871del | GCT | --- | 1 | 1 | A | 0.000387 |
S | 871 | A871S | Gct | Tct | 1 | 1 | A.2.4 | 0.003367 |
S | 871 | A871V | gCt | gTt | 1 | 1 | A.2.5 | 0.000499 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AD.2 | 0.000219 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AD.2 | 0.000219 |
S | 871 | A871del | GCT | --- | 1 | 1 | AH.3 | 0.003802 |
S | 871 | A871A | gcT | gcC | 1 | 1 | AY.100 | 0.000046 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.101 | 0.00049 |
S | 871 | A871T | Gct | Act | 1 | 1 | AY.103 | 0.000006 |
S | 871 | A871G | gCt | gGt | 1 | 1 | AY.104 | 0.001984 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.107 | 0.000466 |
S | 871 | A871del | GCT | --- | 1 | 1 | AY.111 | 0.000183 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.111 | 0.000183 |
S | 871 | A871A | gcT | gcC | 1 | 1 | AY.117 | 0.000085 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.117 | 0.000085 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.117 | 0.000085 |
S | 871 | A871A | gcT | gcC | 1 | 1 | AY.119 | 0.000035 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.12 | 0.000316 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.14 | 0.000088 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.16.1 | 0.00047 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.16.1 | 0.00047 |
S | 871 | A871del | GCT | --- | 1 | 1 | AY.19 | 0.00114 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.2 | 0.000356 |
S | 871 | A871A | gcT | gcG | 1 | 1 | AY.20 | 0.000039 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.23.1 | 0.000417 |
S | 871 | A871del | GCT | --- | 1 | 1 | AY.25 | 0.000006 |
S | 871 | A871P | Gct | Cct | 1 | 1 | AY.25 | 0.000006 |
S | 871 | A871G | gCt | gGt | 1 | 1 | AY.29 | 0.000016 |
S | 871 | A871G | gCt | gGt | 1 | 1 | AY.3 | 0.00001 |
S | 871 | A871A | gcT | gcC | 1 | 1 | AY.33 | 0.000067 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.34.1 | 0.00051 |
S | 871 | A871A | gcT | gcC | 1 | 1 | AY.34.1 | 0.00051 |
S | 871 | A871del | GCT | --- | 1 | 1 | AY.36 | 0.000148 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.37 | 0.000316 |
S | 871 | A871A | gcT | gcC | 1 | 1 | AY.39.1 | 0.00004 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.39.1 | 0.00004 |
S | 871 | A871T | Gct | Act | 1 | 1 | AY.4 | 0.000002 |
S | 871 | A871P | Gct | Cct | 1 | 1 | AY.4 | 0.000002 |
S | 871 | A871A | gcT | gcA | 1 | 1 | AY.4.2 | 0.000022 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.41 | 0.000294 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.42 | 0.00004 |
S | 871 | A871del2 | GCT | --C | 1 | 1 | AY.43 | 0.000004 |
S | 871 | A871L | GCt | CTt | 1 | 1 | AY.43 | 0.000004 |
S | 871 | A871P | Gct | Cct | 1 | 1 | AY.43 | 0.000004 |
S | 871 | A871del1 | Gct | -ct | 1 | 1 | AY.43 | 0.000004 |
S | 871 | A871del | GCT | --- | 1 | 1 | AY.44 | 0.000006 |
S | 871 | A871G | gCt | gGt | 1 | 1 | AY.44 | 0.000006 |
S | 871 | A871del | GCT | --- | 1 | 1 | AY.46 | 0.000104 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.46 | 0.000104 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.46 | 0.000104 |
S | 871 | A871del | GCT | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.46.6 | 0.000072 |
S | 871 | A871A | gcT | gcG | 1 | 1 | AY.5 | 0.000021 |
S | 871 | A871del | GCT | --- | 1 | 1 | AY.52 | 0.000814 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
S | 871 | A871T | Gct | Act | 1 | 1 | AY.55 | 0.000917 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.57 | 0.000656 |
S | 871 | A871del2 | GCt | --t | 1 | 1 | AY.6 | 0.000041 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.6 | 0.000041 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.61 | 0.000105 |
S | 871 | A871L | GCt | CTt | 1 | 1 | AY.67 | 0.000464 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.69 | 0.000187 |
S | 871 | A871P | Gct | Cct | 1 | 1 | AY.7 | 0.000196 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.7 | 0.000196 |
S | 871 | A871D | gCt | gAt | 1 | 1 | AY.7.2 | 0.000559 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.70 | 0.000209 |
S | 871 | A871del | GCT | --- | 1 | 1 | AY.72 | 0.001361 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.74 | 0.000116 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.75 | 0.000056 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
S | 871 | A871del | GCT | --- | 1 | 1 | AY.81 | 0.001992 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.88 | 0.000884 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.9.1 | 0.000084 |
S | 871 | A871A | gcT | gcC | 1 | 1 | AY.9.2 | 0.000037 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.95 | 0.000761 |
S | 871 | A871A | gcT | gcC | 1 | 1 | AY.95 | 0.000761 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.98 | 0.000079 |
S | 871 | A871V | gCt | gTt | 1 | 1 | AY.99 | 0.001049 |
S | 871 | A871del | GCT | --- | 1 | 1 | AY.99 | 0.001049 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AY.99.1 | 0.001553 |
S | 871 | A871del | GCT | --- | 1 | 1 | AY.99.1 | 0.001553 |
S | 871 | A871S | Gct | Tct | 1 | 1 | AZ.2 | 0.000821 |
S | 871 | A871T | Gct | Act | 1 | 1 | B | 0.000128 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B | 0.000128 |
S | 871 | A871T | Gct | Act | 1 | 1 | B.1 | 0.000009 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.1.1 | 0.000327 |
S | 871 | A871A | gcT | gcC | 1 | 1 | B.1.1.10 | 0.001115 |
S | 871 | A871G | gCt | gGt | 1 | 1 | B.1.1.141 | 0.002012 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.1.153 | 0.001095 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.171 | 0.003676 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.174 | 0.003378 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 871 | A871A | gcT | gcC | 1 | 1 | B.1.1.254 | 0.011236 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.289 | 0.002083 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.294 | 0.001266 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.298 | 0.000862 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.1.301 | 0.001179 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.1.311 | 0.000358 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.326 | 0.001761 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.1.33 | 0.000421 |
S | 871 | A871A | gcT | gcC | 1 | 1 | B.1.1.33 | 0.000421 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.33 | 0.000421 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.331 | 0.011628 |
S | 871 | A871A | gcT | gcG | 1 | 1 | B.1.1.348 | 0.000796 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.348 | 0.000796 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.358 | 0.034483 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.1.416 | 0.000905 |
S | 871 | A871T | Gct | Act | 1 | 1 | B.1.1.432 | 0.001266 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.432 | 0.001266 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.1.49 | 0.017544 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.50 | 0.000679 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.507 | 0.008696 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.1.51 | 0.001718 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.519 | 0.00004 |
S | 871 | A871P | Gct | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
S | 871 | A871G | gCT | gGA | 1 | 1 | B.1.1.7 | 0.000001 |
S | 871 | A871del2 | gCT | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 871 | A871D | gCt | gAt | 1 | 1 | B.1.1.70 | 0.000341 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.1.70 | 0.000341 |
S | 871 | A871T | Gct | Act | 1 | 1 | B.1.128 | 0.000635 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.142 | 0.002899 |
S | 871 | A871T | Gct | Act | 1 | 1 | B.1.160.26 | 0.002421 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.177.10 | 0.000878 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.177.12 | 0.000152 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 871 | A871A | gcT | gcG | 1 | 1 | B.1.177.17 | 0.000821 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.177.41 | 0.0025 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.177.43 | 0.001477 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.177.44 | 0.000519 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.177.48 | 0.003125 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.177.48 | 0.003125 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.177.7 | 0.000165 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.177.73 | 0.000566 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.177.8 | 0.000752 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.177.81 | 0.000189 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.177.86 | 0.000183 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.177.86 | 0.000183 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.177.9 | 0.001332 |
S | 871 | A871A | gcT | gcC | 1 | 1 | B.1.178 | 0.02381 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.179 | 0.003759 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.189 | 0.004292 |
S | 871 | A871P | Gct | Cct | 1 | 1 | B.1.2 | 0.000009 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.206 | 0.000816 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.221 | 0.000071 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.221 | 0.000071 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.221.3 | 0.000833 |
S | 871 | A871A | gcT | gcC | 1 | 1 | B.1.232 | 0.000537 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.232 | 0.000537 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.232 | 0.000537 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.234 | 0.000132 |
S | 871 | A871A | gcT | gcC | 1 | 1 | B.1.236 | 0.002053 |
S | 871 | A871A | gcT | gcC | 1 | 1 | B.1.247 | 0.014925 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.265 | 0.001271 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.279 | 0.000514 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.302 | 0.013333 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.311 | 0.000275 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.311 | 0.000275 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.320 | 0.001245 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.346 | 0.001311 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.351.2 | 0.000303 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.351.2 | 0.000303 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.36 | 0.000146 |
S | 871 | A871P | Gct | Cct | 1 | 1 | B.1.36.1 | 0.00114 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.36.31 | 0.001751 |
S | 871 | A871A | gcT | gcC | 1 | 1 | B.1.36.34 | 0.021277 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.36.35 | 0.002604 |
S | 871 | A871P | Gct | Cct | 1 | 1 | B.1.369 | 0.000285 |
S | 871 | A871T | Gct | Act | 1 | 1 | B.1.377 | 0.004566 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.404 | 0.001302 |
S | 871 | A871A | gcT | gcG | 1 | 1 | B.1.407 | 0.035714 |
S | 871 | A871T | Gct | Act | 1 | 1 | B.1.429 | 0.000024 |
S | 871 | A871P | Gct | Cct | 1 | 1 | B.1.526 | 0.000024 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.565 | 0.00081 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.568 | 0.001111 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.575 | 0.000303 |
S | 871 | A871del | GCT | --- | 1 | 1 | B.1.577 | 0.000687 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.589 | 0.007576 |
S | 871 | A871A | gcT | gcC | 1 | 1 | B.1.595 | 0.000261 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.595.2 | 0.04 |
S | 871 | A871A | gcT | gcG | 1 | 1 | B.1.596 | 0.000087 |
S | 871 | A871D | gCt | gAt | 1 | 1 | B.1.596 | 0.000087 |
S | 871 | A871D | gCt | gAt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 871 | A871del1 | Gct | -ct | 1 | 1 | B.1.617.2 | 0.000004 |
S | 871 | A871A | gcT | gcC | 1 | 1 | B.1.617.3 | 0.002985 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.1.619.1 | 0.000641 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.621 | 0.000089 |
S | 871 | A871T | Gct | Act | 1 | 1 | B.1.621 | 0.000089 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.623 | 0.000536 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.628 | 0.000352 |
S | 871 | A871V | gCt | gTt | 1 | 1 | B.1.93 | 0.000934 |
S | 871 | A871S | Gct | Tct | 1 | 1 | B.49 | 0.05 |
S | 871 | A871A | gcT | gcG | 1 | 1 | C.11 | 0.010638 |
S | 871 | A871A | gcT | gcG | 1 | 1 | C.35 | 0.000774 |
S | 871 | A871V | gCt | gTt | 1 | 1 | D.2 | 0.000075 |
S | 871 | A871A | gcT | gcG | 1 | 1 | P.1 | 0.000016 |
S | 871 | A871V | gCt | gTt | 1 | 1 | P.1.1 | 0.000318 |
S | 871 | A871A | gcT | gcA | 1 | 1 | P.1.12 | 0.000484 |
S | 871 | A871del | GCT | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 871 | A871V | gCt | gTt | 1 | 1 | P.1.14 | 0.000048 |
S | 871 | A871V | gCt | gTt | 1 | 1 | P.1.15 | 0.000232 |
S | 871 | A871S | Gct | Tct | 1 | 1 | P.1.15 | 0.000232 |
S | 871 | A871del | GCT | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 871 | A871S | Gct | Tct | 1 | 1 | P.1.8 | 0.004785 |
S | 871 | A871A | gcT | gcG | 1 | 1 | P.2 | 0.000187 |
S | 871 | A871V | gCt | gTt | 1 | 1 | Q.1 | 0.000126 |
S | 871 | A871del | GCT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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