CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 871

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S871A871AsyngcTgcC196417820.90733224173-24175
S871A871AsyngcTgcA1964930.047352324173-24175
S871A871AsyngcTgcG1964890.045315724173-24175
S871A871SnonsynGctTct17341734124173-24175
S871A871VnonsyngCtgTt11881188124173-24175
S871A871deldelGCT---144144124173-24175
S871A871TnonsynGctAct83810.97590424173-24175
S871A871TnonsynGcTAcA8320.024096424173-24175
S871A871PnonsynGctCct1313124173-24175
S871A871GnonsyngCtgGt12110.91666724173-24175
S871A871GnonsyngCTgGA1210.083333324173-24175
S871A871DnonsyngCtgAt99124173-24175
S871A871del2delgCTg--310.33333324173-24175
S871A871del2delGCT--C310.33333324173-24175
S871A871del2delGCt--t310.33333324173-24175
S871A871LnonsynGCtCTt22124173-24175
S871A871del1delGct-ct22124173-24175
S871A871CnonsynGCTTGC22124173-24175

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S871A871AgcTgcC17821964All0.000341
S871A871AgcTgcA931964All0.000018
S871A871AgcTgcG891964All0.000017
S871A871SGctTct17341734All0.000332
S871A871AgcTgcC13101310B.1.36.271
S871A871VgCtgTt11881188All0.000227
S871A871SGctTct480480AY.40.000747
S871A871VgCtgTt379379B.1.1.70.000339
S871A871SGctTct321321B.1.1.70.000287
S871A871AgcTgcC251251B.1.360.036621
S871A871VgCtgTt177177B.1.20.001559
S871A871delGCT---144144All0.000028
S871A871AgcTgcC70103B.1.1.70.000063
S871A871AgcTgcG25103B.1.1.70.000022
S871A871AgcTgcA8103B.1.1.70.000007
S871A871VgCtgTt9999AY.40.000154
S871A871SGctTct8888B.1.617.20.000331
S871A871TGctAct8183All0.000015
S871A871TGcTAcA283All0
S871A871SGctTct8080AY.1030.000497
S871A871SGctTct5757AY.290.000899
S871A871TGctAct5757B.1.1.70.000051
S871A871delGCT---5555B.1.1.70.000049
S871A871SGctTct5353AY.430.000235
S871A871VgCtgTt4545AY.430.000199
S871A871AgcTgcA4444AY.130.007083
S871A871AgcTgcC4344B.1.617.20.000162
S871A871AgcTgcG144B.1.617.20.000004
S871A871SGctTct3737B.1.177.70.0061
S871A871AgcTgcG3637B.1.20.000317
S871A871AgcTgcC137B.1.20.000009
S871A871SGctTct3232AY.270.002071
S871A871VgCtgTt3030B.1.617.20.000113
S871A871SGctTct2828AY.250.000168
S871A871SGctTct2626AY.260.000736
S871A871SGctTct2626AY.3.10.002217
S871A871SGctTct2525B.10.000229
S871A871VgCtgTt2525B.1.1770.000329
S871A871VgCtgTt2424AY.60.000987
S871A871AgcTgcA2323AY.29.10.005072
S871A871SGctTct2323AY.440.00014
S871A871SGctTct1919B.1.1770.00025
S871A871SGctTct1919B.1.20.000167
S871A871VgCtgTt1818AY.250.000108
S871A871SGctTct1818AY.30.000179
S871A871VgCtgTt1818B.1.1.1760.007909
S871A871VgCtgTt1717AY.1000.000782
S871A871VgCtgTt1717AY.440.000103
S871A871SGctTct1717P.10.000268
S871A871VgCtgTt1616AY.1030.000099
S871A871SGctTct1616AY.840.006999
S871A871AgcTgcC1415AY.430.000062
S871A871AgcTgcG115AY.430.000004
S871A871AgcTgcA1515P.1.150.003485
S871A871SGctTct1414AY.1020.000371
S871A871SGctTct1414B.1.5260.000329
S871A871PGctCct1313All0.000002
S871A871AgcTgcC1113AY.40.000017
S871A871AgcTgcG213AY.40.000003
S871A871SGctTct1313B.1.177.870.009461
S871A871GgCtgGt1112All0.000002
S871A871GgCTgGA112All0
S871A871VgCtgTt1212B.1.4290.000282
S871A871VgCtgTt1111AY.4.50.001182
S871A871SGctTct1111AY.50.000227
S871A871VgCtgTt1111B.10.000101
S871A871delGCT---1111B.1.1770.000145
S871A871SGctTct1111C.36.30.006239
S871A871SGctTct1010AY.200.000389
S871A871AgcTgcC1010AY.250.00006
S871A871SGctTct1010AY.390.000247
S871A871VgCtgTt1010AY.4.20.000217
S871A871VgCtgTt1010B.1.10.000181
S871A871SGctTct1010B.1.10.000181
S871A871VgCtgTt1010B.1.1.1590.046729
S871A871SGctTct1010B.1.1.2140.000555
S871A871VgCtgTt1010B.1.1.280.003112
S871A871SGctTct1010P.1.170.001618
S871A871DgCtgAt99All0.000002
S871A871VgCtgTt99B.1.1600.000281
S871A871VgCtgTt99B.1.3510.000268
S871A871SGctTct88AY.116.10.002491
S871A871delGCT---88AY.40.000012
S871A871VgCtgTt88B.1.5260.000188
S871A871AgcTgcC77AD.20.001533
S871A871AgcTgcC77AY.1030.000043
S871A871VgCtgTt77AY.390.000173
S871A871VgCtgTt77AY.98.10.000339
S871A871SGctTct77B.1.1600.000218
S871A871VgCtgTt77B.1.258.170.000728
S871A871SGctTct77B.1.6310.023569
S871A871SGctTct77P.1.10.002224
S871A871delGCT---66AY.4.50.000645
S871A871SGctTct66AY.420.000241
S871A871TGctAct66AY.430.000027
S871A871SGctTct66AY.470.000187
S871A871VgCtgTt66B.1.1.2840.000644
S871A871VgCtgTt66B.1.1.3290.023077
S871A871VgCtgTt66B.1.2430.000418
S871A871SGctTct66B.1.3690.001711
S871A871AgcTgcG66B.1.499.10.666667
S871A871SGctTct66B.1.5960.000523
S871A871VgCtgTt66P.10.000095
S871A871VgCtgTt55AY.200.000194
S871A871SGctTct55AY.230.000349
S871A871SGctTct55AY.540.000477
S871A871DgCtgAt55B.10.000046
S871A871VgCtgTt55B.1.1.2140.000277
S871A871SGctTct55B.1.3510.000149
S871A871SGctTct55B.1.360.00073
S871A871VgCtgTt55B.1.3660.02439
S871A871VgCtgTt55B.1.4000.002145
S871A871VgCtgTt55C.370.00058
S871A871SGctTct55P.1.140.000239
S871A871VgCtgTt44AY.1190.000141
S871A871VgCtgTt44AY.260.000113
S871A871VgCtgTt44AY.290.000063
S871A871SGctTct44AY.300.001583
S871A871AgcTgcC44AY.440.000024
S871A871VgCtgTt44AY.50.000083
S871A871SGctTct44AY.610.000419
S871A871AgcTgcC44B.10.000037
S871A871SGctTct44B.1.177.240.005181
S871A871VgCtgTt44B.1.177.320.005398
S871A871SGctTct44B.1.177.540.002426
S871A871delGCT---44B.1.20.000035
S871A871AgcTgcC44B.1.2600.013378
S871A871AgcTgcC44B.1.4680.022857
S871A871AgcTgcG44B.1.4990.004202
S871A871VgCtgTt44B.1.5170.001708
S871A871delGCT---44B.1.617.20.000015
S871A871SGctTct44B.1.6370.000292
S871A871SGctTct33A.2.50.001497
S871A871del2gCTg--13All0
S871A871del2GCt--t13All0
S871A871del2GCT--C13All0
S871A871SGctTct33AY.1000.000138
S871A871AgcTgcC33AY.1010.001471
S871A871SGctTct33AY.1060.001005
S871A871SGctTct33AY.1190.000106
S871A871SGctTct33AY.120.000948
S871A871delGCT---33AY.1200.000112
S871A871VgCtgTt33AY.1200.000112
S871A871VgCtgTt33AY.1210.000406
S871A871TGctAct33AY.290.000047
S871A871VgCtgTt33AY.30.00003
S871A871SGctTct33AY.330.0002
S871A871SGctTct33AY.340.000291
S871A871SGctTct33AY.39.10.000119
S871A871GgCtgGt33AY.40.000005
S871A871SGctTct33AY.4.20.000065
S871A871GgCtgGt33AY.4.20.000065
S871A871delGCT---33AY.430.000013
S871A871VgCtgTt33AY.470.000093
S871A871SGctTct33AY.620.001307
S871A871SGctTct33AY.7.10.000338
S871A871SGctTct33AY.9.20.00011
S871A871SGctTct33AY.98.10.000145
S871A871VgCtgTt33AZ.20.002463
S871A871SGctTct33AZ.30.004559
S871A871AgcTgcC23B.1.10.000036
S871A871AgcTgcA13B.1.10.000018
S871A871AgcTgcC33B.1.1600.000094
S871A871SGctTct33B.1.160.70.006237
S871A871VgCtgTt33B.1.2340.000396
S871A871VgCtgTt33B.1.3340.054545
S871A871SGctTct33B.1.4290.000071
S871A871SGctTct33B.1.6210.000266
S871A871SGctTct33B.1.6250.007059
S871A871VgCtgTt33P.20.00056
S871A871SGctTct33Q.30.000435
S871A871CGCTTGC220.111111
S871A871TGcTAcA220.111111
S871A871AgcTgcG22A.10.000564
S871A871CGCTTGC22All0
S871A871del1Gct-ct22All0
S871A871LGCtCTt22All0
S871A871VgCtgTt22AY.1020.000053
S871A871VgCtgTt22AY.1130.000285
S871A871SGctTct22AY.1160.000574
S871A871SGctTct22AY.1200.000074
S871A871SGctTct22AY.1210.000271
S871A871SGctTct22AY.130.000322
S871A871AgcTgcC22AY.20.000712
S871A871SGctTct22AY.29.10.000441
S871A871AgcTgcC22AY.30.00002
S871A871AgcTgcC22AY.390.000049
S871A871SGctTct22AY.4.50.000215
S871A871AgcTgcC22AY.460.000208
S871A871SGctTct22AY.46.20.001271
S871A871delGCT---22AY.50.000041
S871A871SGctTct22AY.520.001629
S871A871VgCtgTt22AY.530.000575
S871A871VgCtgTt22AY.620.000871
S871A871SGctTct22AY.90.000135
S871A871AgcTgcC22AY.9.10.000167
S871A871delGCT---22B.10.000018
S871A871PGctCct22B.10.000018
S871A871delGCT---22B.1.10.000036
S871A871SGctTct22B.1.1.2220.000408
S871A871SGctTct22B.1.1.2440.030769
S871A871VgCtgTt22B.1.1.250.001137
S871A871AgcTgcG22B.1.1.2630.003115
S871A871SGctTct22B.1.1.280.000622
S871A871VgCtgTt22B.1.1.3120.003824
S871A871VgCtgTt22B.1.1.3170.000823
S871A871VgCtgTt22B.1.1.390.001019
S871A871SGctTct22B.1.1.4480.004065
S871A871VgCtgTt22B.1.1.5190.000079
S871A871AgcTgcC22B.1.1.5190.000079
S871A871SGctTct22B.1.177.170.001642
S871A871VgCtgTt22B.1.177.450.000762
S871A871delGCT---22B.1.177.630.005405
S871A871TGctAct22B.1.20.000018
S871A871VgCtgTt22B.1.2210.000142
S871A871VgCtgTt22B.1.360.000292
S871A871VgCtgTt22B.1.36.10.002281
S871A871AgcTgcC22B.1.36.160.002849
S871A871delGCT---22B.1.36.170.000988
S871A871SGctTct22B.1.36.290.001035
S871A871SGctTct22B.1.36.380.003284
S871A871VgCtgTt22B.1.3610.002577
S871A871VgCtgTt22B.1.4270.000101
S871A871SGctTct22B.1.466.20.000782
S871A871AgcTgcC22B.1.4970.00063
S871A871VgCtgTt22B.1.5230.004902
S871A871SGctTct22B.1.5250.000226
S871A871delGCT---22B.1.5260.000047
S871A871VgCtgTt22B.1.5510.002581
S871A871VgCtgTt22B.1.564.10.003155
S871A871VgCtgTt22B.1.5770.001375
S871A871SGctTct22B.1.617.10.000258
S871A871PGctCct22B.1.617.20.000008
S871A871TGctAct22B.1.617.20.000008
S871A871VgCtgTt22B.1.621.10.001012
S871A871VgCtgTt22C.2.10.013333
S871A871SGctTct22D.20.00015
S871A871delGCT---22Q.10.000253
S871A871VgCtgTt22Q.20.001227
S871A871VgCtgTt22Q.80.00033
S871A871VgCtgTt22R.10.00018
S871A871delGCT---11A0.000387
S871A871SGctTct11A.2.40.003367
S871A871VgCtgTt11A.2.50.000499
S871A871VgCtgTt11AD.20.000219
S871A871SGctTct11AD.20.000219
S871A871delGCT---11AH.30.003802
S871A871AgcTgcC11AY.1000.000046
S871A871VgCtgTt11AY.1010.00049
S871A871TGctAct11AY.1030.000006
S871A871GgCtgGt11AY.1040.001984
S871A871SGctTct11AY.1070.000466
S871A871delGCT---11AY.1110.000183
S871A871SGctTct11AY.1110.000183
S871A871AgcTgcC11AY.1170.000085
S871A871SGctTct11AY.1170.000085
S871A871VgCtgTt11AY.1170.000085
S871A871AgcTgcC11AY.1190.000035
S871A871VgCtgTt11AY.120.000316
S871A871SGctTct11AY.140.000088
S871A871SGctTct11AY.16.10.00047
S871A871VgCtgTt11AY.16.10.00047
S871A871delGCT---11AY.190.00114
S871A871SGctTct11AY.20.000356
S871A871AgcTgcG11AY.200.000039
S871A871SGctTct11AY.23.10.000417
S871A871delGCT---11AY.250.000006
S871A871PGctCct11AY.250.000006
S871A871GgCtgGt11AY.290.000016
S871A871GgCtgGt11AY.30.00001
S871A871AgcTgcC11AY.330.000067
S871A871VgCtgTt11AY.34.10.00051
S871A871AgcTgcC11AY.34.10.00051
S871A871delGCT---11AY.360.000148
S871A871SGctTct11AY.370.000316
S871A871AgcTgcC11AY.39.10.00004
S871A871VgCtgTt11AY.39.10.00004
S871A871TGctAct11AY.40.000002
S871A871PGctCct11AY.40.000002
S871A871AgcTgcA11AY.4.20.000022
S871A871SGctTct11AY.4.2.10.000149
S871A871SGctTct11AY.410.000294
S871A871VgCtgTt11AY.420.00004
S871A871del2GCT--C11AY.430.000004
S871A871LGCtCTt11AY.430.000004
S871A871PGctCct11AY.430.000004
S871A871del1Gct-ct11AY.430.000004
S871A871delGCT---11AY.440.000006
S871A871GgCtgGt11AY.440.000006
S871A871delGCT---11AY.460.000104
S871A871VgCtgTt11AY.460.000104
S871A871SGctTct11AY.460.000104
S871A871delGCT---11AY.46.20.000635
S871A871SGctTct11AY.46.60.000072
S871A871AgcTgcG11AY.50.000021
S871A871delGCT---11AY.520.000814
S871A871VgCtgTt11AY.540.000095
S871A871TGctAct11AY.550.000917
S871A871SGctTct11AY.570.000656
S871A871del2GCt--t11AY.60.000041
S871A871SGctTct11AY.60.000041
S871A871VgCtgTt11AY.610.000105
S871A871LGCtCTt11AY.670.000464
S871A871SGctTct11AY.690.000187
S871A871PGctCct11AY.70.000196
S871A871SGctTct11AY.70.000196
S871A871DgCtgAt11AY.7.20.000559
S871A871VgCtgTt11AY.700.000209
S871A871delGCT---11AY.720.001361
S871A871SGctTct11AY.740.000116
S871A871VgCtgTt11AY.750.000056
S871A871SGctTct11AY.75.10.00018
S871A871delGCT---11AY.810.001992
S871A871VgCtgTt11AY.880.000884
S871A871VgCtgTt11AY.90.000068
S871A871SGctTct11AY.9.10.000084
S871A871AgcTgcC11AY.9.20.000037
S871A871SGctTct11AY.950.000761
S871A871AgcTgcC11AY.950.000761
S871A871VgCtgTt11AY.980.000079
S871A871VgCtgTt11AY.990.001049
S871A871delGCT---11AY.990.001049
S871A871SGctTct11AY.99.10.001553
S871A871delGCT---11AY.99.10.001553
S871A871SGctTct11AZ.20.000821
S871A871TGctAct11B0.000128
S871A871SGctTct11B0.000128
S871A871TGctAct11B.10.000009
S871A871VgCtgTt11B.1.1.10.000327
S871A871AgcTgcC11B.1.1.100.001115
S871A871GgCtgGt11B.1.1.1410.002012
S871A871VgCtgTt11B.1.1.1530.001095
S871A871SGctTct11B.1.1.1710.003676
S871A871SGctTct11B.1.1.1740.003378
S871A871delGCT---11B.1.1.2360.006897
S871A871AgcTgcC11B.1.1.2540.011236
S871A871SGctTct11B.1.1.2890.002083
S871A871SGctTct11B.1.1.2940.001266
S871A871SGctTct11B.1.1.2980.000862
S871A871VgCtgTt11B.1.1.3010.001179
S871A871delGCT---11B.1.1.3110.000358
S871A871VgCtgTt11B.1.1.3110.000358
S871A871delGCT---11B.1.1.3120.001912
S871A871SGctTct11B.1.1.3260.001761
S871A871VgCtgTt11B.1.1.330.000421
S871A871AgcTgcC11B.1.1.330.000421
S871A871SGctTct11B.1.1.330.000421
S871A871SGctTct11B.1.1.3310.011628
S871A871AgcTgcG11B.1.1.3480.000796
S871A871SGctTct11B.1.1.3480.000796
S871A871SGctTct11B.1.1.3580.034483
S871A871SGctTct11B.1.1.370.000193
S871A871VgCtgTt11B.1.1.4160.000905
S871A871TGctAct11B.1.1.4320.001266
S871A871SGctTct11B.1.1.4320.001266
S871A871VgCtgTt11B.1.1.490.017544
S871A871SGctTct11B.1.1.500.000679
S871A871SGctTct11B.1.1.5070.008696
S871A871VgCtgTt11B.1.1.510.001718
S871A871SGctTct11B.1.1.5190.00004
S871A871PGctCct11B.1.1.70.000001
S871A871GgCTgGA11B.1.1.70.000001
S871A871del2gCTg--11B.1.1.70.000001
S871A871DgCtgAt11B.1.1.700.000341
S871A871SGctTct11B.1.1.700.000341
S871A871TGctAct11B.1.1280.000635
S871A871SGctTct11B.1.1420.002899
S871A871TGctAct11B.1.160.260.002421
S871A871delGCT---11B.1.177.100.000878
S871A871VgCtgTt11B.1.177.120.000152
S871A871delGCT---11B.1.177.170.000821
S871A871AgcTgcG11B.1.177.170.000821
S871A871delGCT---11B.1.177.180.00116
S871A871delGCT---11B.1.177.210.000076
S871A871VgCtgTt11B.1.177.40.000211
S871A871delGCT---11B.1.177.40.000211
S871A871SGctTct11B.1.177.410.0025
S871A871SGctTct11B.1.177.430.001477
S871A871VgCtgTt11B.1.177.440.000519
S871A871delGCT---11B.1.177.480.003125
S871A871SGctTct11B.1.177.480.003125
S871A871delGCT---11B.1.177.540.000606
S871A871delGCT---11B.1.177.560.000668
S871A871delGCT---11B.1.177.580.001332
S871A871delGCT---11B.1.177.600.000218
S871A871VgCtgTt11B.1.177.70.000165
S871A871VgCtgTt11B.1.177.730.000566
S871A871SGctTct11B.1.177.80.000752
S871A871VgCtgTt11B.1.177.810.000189
S871A871SGctTct11B.1.177.860.000183
S871A871VgCtgTt11B.1.177.860.000183
S871A871VgCtgTt11B.1.177.90.001332
S871A871AgcTgcC11B.1.1780.02381
S871A871delGCT---11B.1.1790.003759
S871A871VgCtgTt11B.1.1890.004292
S871A871PGctCct11B.1.20.000009
S871A871SGctTct11B.1.2060.000816
S871A871SGctTct11B.1.2210.000071
S871A871delGCT---11B.1.2210.000071
S871A871VgCtgTt11B.1.221.30.000833
S871A871AgcTgcC11B.1.2320.000537
S871A871SGctTct11B.1.2320.000537
S871A871VgCtgTt11B.1.2320.000537
S871A871SGctTct11B.1.2340.000132
S871A871AgcTgcC11B.1.2360.002053
S871A871AgcTgcC11B.1.2470.014925
S871A871delGCT---11B.1.2580.000067
S871A871VgCtgTt11B.1.2650.001271
S871A871VgCtgTt11B.1.2790.000514
S871A871VgCtgTt11B.1.3020.013333
S871A871SGctTct11B.1.3110.000275
S871A871VgCtgTt11B.1.3110.000275
S871A871SGctTct11B.1.3200.001245
S871A871VgCtgTt11B.1.3460.001311
S871A871VgCtgTt11B.1.351.20.000303
S871A871SGctTct11B.1.351.20.000303
S871A871delGCT---11B.1.360.000146
S871A871PGctCct11B.1.36.10.00114
S871A871delGCT---11B.1.36.180.00042
S871A871VgCtgTt11B.1.36.310.001751
S871A871AgcTgcC11B.1.36.340.021277
S871A871VgCtgTt11B.1.36.350.002604
S871A871PGctCct11B.1.3690.000285
S871A871TGctAct11B.1.3770.004566
S871A871VgCtgTt11B.1.4040.001302
S871A871AgcTgcG11B.1.4070.035714
S871A871TGctAct11B.1.4290.000024
S871A871PGctCct11B.1.5260.000024
S871A871SGctTct11B.1.5650.00081
S871A871VgCtgTt11B.1.5680.001111
S871A871SGctTct11B.1.5750.000303
S871A871delGCT---11B.1.5770.000687
S871A871VgCtgTt11B.1.5890.007576
S871A871AgcTgcC11B.1.5950.000261
S871A871SGctTct11B.1.595.20.04
S871A871AgcTgcG11B.1.5960.000087
S871A871DgCtgAt11B.1.5960.000087
S871A871DgCtgAt11B.1.617.20.000004
S871A871del1Gct-ct11B.1.617.20.000004
S871A871AgcTgcC11B.1.617.30.002985
S871A871SGctTct11B.1.619.10.000641
S871A871VgCtgTt11B.1.6210.000089
S871A871TGctAct11B.1.6210.000089
S871A871VgCtgTt11B.1.6230.000536
S871A871VgCtgTt11B.1.6280.000352
S871A871VgCtgTt11B.1.930.000934
S871A871SGctTct11B.490.05
S871A871AgcTgcG11C.110.010638
S871A871AgcTgcG11C.350.000774
S871A871VgCtgTt11D.20.000075
S871A871AgcTgcG11P.10.000016
S871A871VgCtgTt11P.1.10.000318
S871A871AgcTgcA11P.1.120.000484
S871A871delGCT---11P.1.130.000898
S871A871VgCtgTt11P.1.140.000048
S871A871VgCtgTt11P.1.150.000232
S871A871SGctTct11P.1.150.000232
S871A871delGCT---11P.1.150.000232
S871A871SGctTct11P.1.80.004785
S871A871AgcTgcG11P.20.000187
S871A871VgCtgTt11Q.10.000126
S871A871delGCT---11U.30.003861