CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 870

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S870I870VnonsynAttGtt13081308124170-24172
S870I870IsynatTatC5964270.71644324170-24172
S870I870IsynatTatA5961690.28355724170-24172
S870I870deldelATT---146146124170-24172
S870I870TnonsynaTtaCt109109124170-24172
S870I870SnonsynaTtaGt79730.92405124170-24172
S870I870SnonsynaTTaGC7930.037974724170-24172
S870I870SnonsynATtTCt7920.025316524170-24172
S870I870SnonsynATTTCC7910.012658224170-24172
S870I870LnonsynAttCtt88124170-24172
S870I870del1delAtt-tt740.57142924170-24172
S870I870del1delaTta-t710.14285724170-24172
S870I870del1delATt-Ct710.14285724170-24172
S870I870del1delATT-NN710.14285724170-24172
S870I870del2delATT--N420.524170-24172
S870I870del2delaTTa--410.2524170-24172
S870I870del2delATt--t410.2524170-24172
S870I870FnonsynAttTtt33124170-24172
S870I870MnonsynatTatG22124170-24172
S870I870PnonsynATtCCt11124170-24172
S870I870AnonsynATtGCt11124170-24172
S870I870RnonsynaTTaGG11124170-24172

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S870I870VAttGtt13081308All0.00025
S870I870IatTatC427596All0.000082
S870I870IatTatA169596All0.000032
S870I870VAttGtt312312B.1.5260.007333
S870I870IatTatC291296AY.40.000453
S870I870IatTatA5296AY.40.000008
S870I870VAttGtt249249B.1.1.70.000223
S870I870delATT---146146All0.000028
S870I870VAttGtt123123B.1.617.20.000463
S870I870VAttGtt116116AY.430.000514
S870I870TaTtaCt109109All0.000021
S870I870VAttGtt105105AY.40.000163
S870I870VAttGtt9595B.1.1.3391
S870I870SaTtaGt7379All0.000014
S870I870SaTTaGC379All0.000001
S870I870SATtTCt279All0
S870I870SATTTCC179All0
S870I870VAttGtt5656B.10.000513
S870I870delATT---5656B.1.1.70.00005
S870I870IatTatA5454B.1.20.000475
S870I870VAttGtt4848B.1.258.170.004991
S870I870TaTtaCt3535AY.40.000054
S870I870VAttGtt3030AY.1030.000186
S870I870SaTtaGt2626B.1.1.70.000023
S870I870IatTatC2225B.1.1.70.00002
S870I870IatTatA325B.1.1.70.000003
S870I870IatTatA1222B.1.617.20.000045
S870I870IatTatC1022B.1.617.20.000038
S870I870IatTatA1721AY.430.000075
S870I870IatTatC421AY.430.000018
S870I870IatTatA1020P.1.140.000478
S870I870IatTatC1020P.1.140.000478
S870I870VAttGtt1919AY.34.10.009689
S870I870TaTtaCt1919B.1.2210.00135
S870I870TaTtaCt1717AY.90.001149
S870I870IatTatC1616AY.200.000622
S870I870IatTatC1516P.10.000236
S870I870IatTatA116P.10.000016
S870I870IatTatA1515AY.116.10.004671
S870I870VAttGtt1515B.1.20.000132
S870I870VAttGtt1414AY.440.000085
S870I870VAttGtt1414B.1.1600.000437
S870I870IatTatC1014B.1.4290.000235
S870I870IatTatA414B.1.4290.000094
S870I870delATT---1111B.1.1770.000145
S870I870VAttGtt1010AY.240.00431
S870I870IatTatA1010N.40.042553
S870I870IatTatA99AY.30.00009
S870I870VAttGtt99B.1.10.000163
S870I870LAttCtt88All0.000002
S870I870VAttGtt88AY.390.000198
S870I870delATT---88AY.40.000012
S870I870del1Att-tt47All0.000001
S870I870del1aTta-t17All0
S870I870del1ATt-Ct17All0
S870I870del1ATT-NN17All0
S870I870IatTatC57AY.340.000485
S870I870IatTatA27AY.340.000194
S870I870VAttGtt77B.1.4860.777778
S870I870delATT---66AY.4.50.000645
S870I870IatTatC56AY.440.00003
S870I870IatTatA16AY.440.000006
S870I870IatTatC66Q.20.003681
S870I870SaTtaGt350.166667
S870I870SaTTaGC250.111111
S870I870VAttGtt55AY.30.00005
S870I870delATT---55AY.430.000022
S870I870TaTtaCt55AY.680.001369
S870I870SaTtaGt55B.1.1770.000066
S870I870del2ATT--N24All0
S870I870del2ATt--t14All0
S870I870del2aTTa--14All0
S870I870IatTatA44AY.1020.000106
S870I870VAttGtt44AY.250.000024
S870I870IatTatA44AY.690.000747
S870I870SaTtaGt44B.10.000037
S870I870IatTatA24B.10.000018
S870I870IatTatC24B.10.000018
S870I870SaTtaGt44B.1.1600.000125
S870I870IatTatC44B.1.177.600.000874
S870I870delATT---44B.1.20.000035
S870I870delATT---44B.1.617.20.000015
S870I870VAttGtt44P.10.000063
S870I870VAttGtt33A.23.10.002113
S870I870FAttTtt33All0.000001
S870I870VAttGtt33AY.1020.00008
S870I870VAttGtt33AY.1050.001929
S870I870delATT---33AY.1200.000112
S870I870IatTatA23AY.1200.000074
S870I870IatTatC13AY.1200.000037
S870I870SaTtaGt33AY.230.000209
S870I870VAttGtt33AY.4.20.000065
S870I870VAttGtt33AY.420.000121
S870I870VAttGtt33AY.980.000237
S870I870TaTtaCt33B.1.1.3720.002066
S870I870TaTtaCt33B.1.1.70.000003
S870I870IatTatC33B.1.177.40.000633
S870I870TaTtaCt33B.1.20.000026
S870I870VAttGtt33B.1.2340.000396
S870I870VAttGtt33B.1.351.20.000908
S870I870IatTatC33B.1.5950.000783
S870I870IatTatA33B.1.5960.000261
S870I870TaTtaCt33B.1.617.20.000011
S870I870LAttCtt220.111111
S870I870MatTatG22All0
S870I870TaTtaCt22AY.1030.000012
S870I870VAttGtt22AY.1170.000169
S870I870IatTatC22AY.250.000012
S870I870TaTtaCt22AY.250.000012
S870I870VAttGtt22AY.260.000057
S870I870TaTtaCt22AY.290.000032
S870I870IatTatC22AY.330.000134
S870I870VAttGtt22AY.460.000208
S870I870IatTatC22AY.470.000062
S870I870delATT---22AY.50.000041
S870I870VAttGtt22AY.60.000082
S870I870SaTtaGt22AY.920.000575
S870I870VAttGtt22B0.000256
S870I870delATT---22B.10.000018
S870I870TaTtaCt22B.1.1.1760.000879
S870I870SaTtaGt22B.1.1.4110.029412
S870I870del2ATT--N22B.1.1.70.000002
S870I870IatTatA22B.1.1600.000062
S870I870SaTtaGt22B.1.160.140.004237
S870I870SaTtaGt22B.1.177.530.004785
S870I870delATT---22B.1.177.630.005405
S870I870del1aTta-t12B.1.20.000009
S870I870del1ATT-NN12B.1.20.000009
S870I870SaTtaGt12B.1.2210.000071
S870I870SaTTaGC12B.1.2210.000071
S870I870delATT---22B.1.36.170.000988
S870I870IatTatC22B.1.36.80.002
S870I870delATT---22B.1.5260.000047
S870I870SaTtaGt22B.1.617.20.000008
S870I870delATT---22Q.10.000253
S870I870delATT---11A0.000387
S870I870delATT---11AH.30.003802
S870I870RaTTaGG11All0
S870I870AATtGCt11All0
S870I870PATtCCt11All0
S870I870IatTatC11AY.1000.000046
S870I870LAttCtt11AY.1030.000006
S870I870IatTatC11AY.1060.000335
S870I870VAttGtt11AY.1090.00074
S870I870delATT---11AY.1110.000183
S870I870VAttGtt11AY.1110.000183
S870I870VAttGtt11AY.1130.000142
S870I870VAttGtt11AY.1160.000287
S870I870TaTtaCt11AY.1190.000035
S870I870LAttCtt11AY.130.000161
S870I870delATT---11AY.190.00114
S870I870VAttGtt11AY.200.000039
S870I870VAttGtt11AY.230.00007
S870I870IatTatA11AY.230.00007
S870I870VAttGtt11AY.23.10.000417
S870I870LAttCtt11AY.250.000006
S870I870delATT---11AY.250.000006
S870I870VAttGtt11AY.270.000065
S870I870AATtGCt11AY.30.00001
S870I870PATtCCt11AY.30.00001
S870I870SATtTCt11AY.30.00001
S870I870TaTtaCt11AY.30.00001
S870I870IatTatC11AY.3.10.000085
S870I870VAttGtt11AY.320.000532
S870I870SaTtaGt11AY.34.10.00051
S870I870delATT---11AY.360.000148
S870I870IatTatC11AY.380.000499
S870I870IatTatC11AY.390.000025
S870I870TaTtaCt11AY.39.10.00004
S870I870IatTatC11AY.39.10.00004
S870I870del1Att-tt11AY.40.000002
S870I870IatTatA11AY.4.20.000022
S870I870IatTatC11AY.4.30.000842
S870I870VAttGtt11AY.4.40.000409
S870I870TaTtaCt11AY.430.000004
S870I870del1ATt-Ct11AY.430.000004
S870I870RaTTaGG11AY.430.000004
S870I870delATT---11AY.440.000006
S870I870TaTtaCt11AY.440.000006
S870I870delATT---11AY.460.000104
S870I870delATT---11AY.46.20.000635
S870I870VAttGtt11AY.470.000031
S870I870VAttGtt11AY.480.000465
S870I870VAttGtt11AY.50.000021
S870I870IatTatC11AY.50.000021
S870I870VAttGtt11AY.5.40.000277
S870I870delATT---11AY.520.000814
S870I870VAttGtt11AY.550.000917
S870I870TaTtaCt11AY.60.000041
S870I870SaTtaGt11AY.600.000938
S870I870SATtTCt11AY.670.000464
S870I870LAttCtt11AY.690.000187
S870I870VAttGtt11AY.7.10.000113
S870I870SATTTCC11AY.7.20.000559
S870I870delATT---11AY.720.001361
S870I870VAttGtt11AY.750.000056
S870I870delATT---11AY.810.001992
S870I870TaTtaCt11AY.9.20.000037
S870I870VAttGtt11AY.98.10.000048
S870I870delATT---11AY.990.001049
S870I870delATT---11AY.99.10.001553
S870I870IatTatC11B0.000128
S870I870SaTtaGt11B0.000128
S870I870del2ATt--t11B0.000128
S870I870MatTatG11B.10.000009
S870I870FAttTtt11B.10.000009
S870I870del2aTTa--11B.1.10.000018
S870I870SaTtaGt11B.1.10.000018
S870I870delATT---11B.1.10.000018
S870I870SaTtaGt11B.1.1.1890.001513
S870I870delATT---11B.1.1.2360.006897
S870I870delATT---11B.1.1.3110.000358
S870I870VAttGtt11B.1.1.3120.001912
S870I870delATT---11B.1.1.3120.001912
S870I870VAttGtt11B.1.1.370.000193
S870I870VAttGtt11B.1.1.500.000679
S870I870IatTatA11B.1.1.5190.00004
S870I870del1Att-tt11B.1.1.70.000001
S870I870LAttCtt11B.1.1.70.000001
S870I870MatTatG11B.1.1.70.000001
S870I870IatTatA11B.1.110.30.000718
S870I870SaTtaGt11B.1.160.280.002924
S870I870SaTtaGt11B.1.160.300.002976
S870I870IatTatA11B.1.1770.000013
S870I870VAttGtt11B.1.1770.000013
S870I870TaTtaCt11B.1.1770.000013
S870I870delATT---11B.1.177.100.000878
S870I870delATT---11B.1.177.170.000821
S870I870delATT---11B.1.177.180.00116
S870I870delATT---11B.1.177.210.000076
S870I870del1Att-tt11B.1.177.40.000211
S870I870delATT---11B.1.177.40.000211
S870I870SaTtaGt11B.1.177.430.001477
S870I870delATT---11B.1.177.480.003125
S870I870delATT---11B.1.177.540.000606
S870I870delATT---11B.1.177.560.000668
S870I870delATT---11B.1.177.580.001332
S870I870delATT---11B.1.177.600.000218
S870I870SaTtaGt11B.1.177.70.000165
S870I870SaTtaGt11B.1.177.810.000189
S870I870delATT---11B.1.1790.003759
S870I870SaTtaGt11B.1.20.000009
S870I870IatTatC11B.1.2140.003663
S870I870IatTatA11B.1.2210.000071
S870I870delATT---11B.1.2210.000071
S870I870IatTatA11B.1.2290.009709
S870I870SaTtaGt11B.1.2360.002053
S870I870VAttGtt11B.1.2400.000216
S870I870TaTtaCt11B.1.2400.000216
S870I870VAttGtt11B.1.2580.000067
S870I870delATT---11B.1.2580.000067
S870I870SaTtaGt11B.1.2580.000067
S870I870TaTtaCt11B.1.258.170.000104
S870I870SaTtaGt11B.1.3510.00003
S870I870delATT---11B.1.360.000146
S870I870delATT---11B.1.36.180.00042
S870I870SaTtaGt11B.1.3750.00082
S870I870VAttGtt11B.1.4270.00005
S870I870IatTatA11B.1.4270.00005
S870I870TaTtaCt11B.1.438.10.000107
S870I870IatTatA11B.1.466.20.000391
S870I870FAttTtt11B.1.5030.002488
S870I870SaTtaGt11B.1.5250.000113
S870I870IatTatC11B.1.5260.000024
S870I870LAttCtt11B.1.5270.003704
S870I870del1Att-tt11B.1.5650.00081
S870I870delATT---11B.1.5770.000687
S870I870VAttGtt11B.1.617.10.000129
S870I870FAttTtt11B.1.617.20.000004
S870I870VAttGtt11B.40.002208
S870I870VAttGtt11B.550.00295
S870I870VAttGtt11B.60.00091
S870I870VAttGtt11N.10.016949
S870I870IatTatC11N.30.005814
S870I870TaTtaCt11P.10.000016
S870I870delATT---11P.1.130.000898
S870I870VAttGtt11P.1.140.000048
S870I870delATT---11P.1.150.000232
S870I870TaTtaCt11P.20.000187
S870I870SaTtaGt11R.10.00009
S870I870delATT---11U.30.003861