CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 859 | T859N | nonsyn | aCt | aAt | 24827 | 24818 | 0.999637 | 24137-24139 | |
S | 859 | T859N | nonsyn | aCT | aAC | 24827 | 9 | 0.000362509 | 24137-24139 | |
S | 859 | T859I | nonsyn | aCt | aTt | 9064 | 9044 | 0.997793 | 24137-24139 | |
S | 859 | T859I | nonsyn | aCT | aTC | 9064 | 20 | 0.00220653 | 24137-24139 | |
S | 859 | T859T | syn | acT | acC | 364 | 224 | 0.615385 | 24137-24139 | |
S | 859 | T859T | syn | acT | acG | 364 | 86 | 0.236264 | 24137-24139 | |
S | 859 | T859T | syn | acT | acA | 364 | 54 | 0.148352 | 24137-24139 | |
S | 859 | T859del | del | ACT | --- | 148 | 148 | 1 | 24137-24139 | |
S | 859 | T859A | nonsyn | Act | Gct | 67 | 66 | 0.985075 | 24137-24139 | |
S | 859 | T859A | nonsyn | AcT | GcG | 67 | 1 | 0.0149254 | 24137-24139 | |
S | 859 | T859S | nonsyn | aCt | aGt | 44 | 35 | 0.795455 | 24137-24139 | |
S | 859 | T859S | nonsyn | Act | Tct | 44 | 9 | 0.204545 | 24137-24139 | |
S | 859 | T859del1 | del | Act | -ct | 10 | 5 | 0.5 | 24137-24139 | |
S | 859 | T859del1 | del | acT | ac- | 10 | 2 | 0.2 | 24137-24139 | |
S | 859 | T859del1 | del | ACT | -NG | 10 | 1 | 0.1 | 24137-24139 | |
S | 859 | T859del1 | del | aCt | a-t | 10 | 1 | 0.1 | 24137-24139 | |
S | 859 | T859del1 | del | ACt | G-t | 10 | 1 | 0.1 | 24137-24139 | |
S | 859 | T859del2 | del | aCT | a-- | 4 | 2 | 0.5 | 24137-24139 | |
S | 859 | T859del2 | del | ACt | --t | 4 | 2 | 0.5 | 24137-24139 | |
S | 859 | T859P | nonsyn | Act | Cct | 1 | 1 | 1 | 24137-24139 | |
S | 859 | T859M | nonsyn | aCT | aTG | 1 | 1 | 1 | 24137-24139 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 859 | T859N | aCt | aAt | 24818 | 24827 | All | 0.004747 |
S | 859 | T859N | aCT | aAC | 9 | 24827 | All | 0.000002 |
S | 859 | T859N | aCt | aAt | 13341 | 13348 | B.1.637 | 0.974863 |
S | 859 | T859N | aCT | aAC | 7 | 13348 | B.1.637 | 0.000512 |
S | 859 | T859I | aCt | aTt | 9044 | 9064 | All | 0.00173 |
S | 859 | T859I | aCT | aTC | 20 | 9064 | All | 0.000004 |
S | 859 | T859N | aCt | aAt | 8533 | 8535 | C.37 | 0.990367 |
S | 859 | T859N | aCT | aAC | 2 | 8535 | C.37 | 0.000232 |
S | 859 | T859I | aCt | aTt | 2886 | 2886 | AY.4 | 0.004492 |
S | 859 | T859I | aCt | aTt | 782 | 782 | AY.34 | 0.075827 |
S | 859 | T859N | aCt | aAt | 548 | 548 | B.1 | 0.005019 |
S | 859 | T859I | aCt | aTt | 545 | 545 | AY.25 | 0.003278 |
S | 859 | T859I | aCt | aTt | 379 | 379 | B.1.2 | 0.003337 |
S | 859 | T859I | aCt | aTt | 376 | 376 | B.1.617.2 | 0.001416 |
S | 859 | T859N | aCt | aAt | 368 | 368 | C.37.1 | 0.963351 |
S | 859 | T859T | acT | acC | 224 | 364 | All | 0.000043 |
S | 859 | T859T | acT | acG | 86 | 364 | All | 0.000016 |
S | 859 | T859T | acT | acA | 54 | 364 | All | 0.00001 |
S | 859 | T859I | aCt | aTt | 309 | 309 | B.1.1.7 | 0.000277 |
S | 859 | T859N | aCt | aAt | 307 | 307 | B.1.36.9 | 0.987138 |
S | 859 | T859I | aCt | aTt | 298 | 298 | B.1.243 | 0.020736 |
S | 859 | T859N | aCt | aAt | 251 | 251 | B.1.617.2 | 0.000945 |
S | 859 | T859N | aCt | aAt | 212 | 212 | C.1.2 | 0.902128 |
S | 859 | T859I | aCt | aTt | 198 | 198 | AY.44 | 0.001205 |
S | 859 | T859I | aCt | aTt | 188 | 188 | AY.43 | 0.000833 |
S | 859 | T859N | aCt | aAt | 173 | 173 | B.1.626 | 0.988571 |
S | 859 | T859del | ACT | --- | 148 | 148 | All | 0.000028 |
S | 859 | T859N | aCt | aAt | 140 | 140 | B.1.1 | 0.00254 |
S | 859 | T859N | aCt | aAt | 127 | 127 | B.1.415.1 | 0.962121 |
S | 859 | T859I | aCt | aTt | 126 | 126 | B.1 | 0.001154 |
S | 859 | T859I | aCt | aTt | 120 | 120 | B.1.160 | 0.003743 |
S | 859 | T859I | aCt | aTt | 102 | 102 | B.1.564 | 0.043441 |
S | 859 | T859T | acT | acG | 81 | 100 | AY.103 | 0.000503 |
S | 859 | T859T | acT | acC | 16 | 100 | AY.103 | 0.000099 |
S | 859 | T859T | acT | acA | 3 | 100 | AY.103 | 0.000019 |
S | 859 | T859I | aCt | aTt | 96 | 96 | AY.103 | 0.000596 |
S | 859 | T859I | aCt | aTt | 85 | 85 | B.1.1 | 0.001542 |
S | 859 | T859I | aCt | aTt | 83 | 83 | AH.2 | 1 |
S | 859 | T859I | aCt | aTt | 80 | 80 | B.1.534 | 1 |
S | 859 | T859I | aCt | aTt | 77 | 77 | AY.98.1 | 0.003729 |
S | 859 | T859I | aCt | aTt | 76 | 76 | AY.3 | 0.000756 |
S | 859 | T859I | aCt | aTt | 75 | 75 | AY.102 | 0.001989 |
S | 859 | T859A | Act | Gct | 66 | 67 | All | 0.000013 |
S | 859 | T859A | AcT | GcG | 1 | 67 | All | 0 |
S | 859 | T859N | aCt | aAt | 65 | 65 | AY.102 | 0.001723 |
S | 859 | T859I | aCt | aTt | 65 | 65 | B.1.552 | 0.984848 |
S | 859 | T859I | aCt | aTt | 64 | 64 | AY.24 | 0.027586 |
S | 859 | T859I | aCt | aTt | 61 | 61 | AY.100 | 0.002806 |
S | 859 | T859I | aCt | aTt | 60 | 60 | A.2.5 | 0.02994 |
S | 859 | T859T | acT | acC | 60 | 60 | AY.113 | 0.008543 |
S | 859 | T859I | aCt | aTt | 58 | 58 | AY.5 | 0.001198 |
S | 859 | T859I | aCt | aTt | 58 | 58 | B.1.177 | 0.000764 |
S | 859 | T859I | aCt | aTt | 53 | 53 | B.1.351 | 0.001576 |
S | 859 | T859I | aCt | aTt | 50 | 50 | P.2 | 0.009332 |
S | 859 | T859I | aCt | aTt | 49 | 49 | AY.39 | 0.001211 |
S | 859 | T859N | aCt | aAt | 49 | 49 | AY.46.6 | 0.003538 |
S | 859 | T859del | ACT | --- | 48 | 48 | B.1.1.7 | 0.000043 |
S | 859 | T859I | aCt | aTt | 46 | 46 | AY.23 | 0.003208 |
S | 859 | T859I | aCt | aTt | 46 | 46 | P.1 | 0.000725 |
S | 859 | T859S | aCt | aGt | 35 | 44 | All | 0.000007 |
S | 859 | T859S | Act | Tct | 9 | 44 | All | 0.000002 |
S | 859 | T859N | aCt | aAt | 44 | 44 | B.1.639 | 0.956522 |
S | 859 | T859I | aCt | aTt | 43 | 43 | AZ.5 | 0.150877 |
S | 859 | T859I | aCt | aTt | 42 | 42 | AY.29 | 0.000662 |
S | 859 | T859N | aCt | aAt | 41 | 41 | B.1.1.524 | 0.854167 |
S | 859 | T859I | aCt | aTt | 41 | 41 | B.1.177.15 | 0.025868 |
S | 859 | T859I | aCt | aTt | 39 | 39 | B.1.1.159 | 0.182243 |
S | 859 | T859I | aCt | aTt | 39 | 39 | B.1.36 | 0.00569 |
S | 859 | T859I | aCt | aTt | 39 | 39 | B.1.596 | 0.003398 |
S | 859 | T859N | aCt | aAt | 38 | 38 | AY.43 | 0.000168 |
S | 859 | T859I | aCt | aTt | 38 | 38 | B.1.429 | 0.000894 |
S | 859 | T859I | aCt | aTt | 36 | 36 | AY.47 | 0.00112 |
S | 859 | T859N | aCt | aAt | 36 | 36 | C.40 | 1 |
S | 859 | T859N | aCt | aAt | 32 | 32 | C.36.3.1 | 0.086957 |
S | 859 | T859I | aCt | aTt | 30 | 30 | B.1.1.317 | 0.012351 |
S | 859 | T859I | aCt | aTt | 29 | 29 | AY.119 | 0.001024 |
S | 859 | T859T | acT | acC | 24 | 29 | AY.4 | 0.000037 |
S | 859 | T859T | acT | acA | 5 | 29 | AY.4 | 0.000008 |
S | 859 | T859T | acT | acC | 28 | 28 | B.1.177 | 0.000369 |
S | 859 | T859N | aCt | aAt | 28 | 28 | B.1.214.2 | 0.016787 |
S | 859 | T859N | aCt | aAt | 27 | 27 | AY.92 | 0.007756 |
S | 859 | T859A | Act | Gct | 26 | 26 | B.1.1.7 | 0.000023 |
S | 859 | T859I | aCt | aTt | 26 | 26 | B.1.258.17 | 0.002703 |
S | 859 | T859N | aCt | aAt | 26 | 26 | B.1.526 | 0.000611 |
S | 859 | T859T | acT | acA | 25 | 25 | AY.42 | 0.001006 |
S | 859 | T859I | aCt | aTt | 25 | 25 | B.1.1.483 | 0.961538 |
S | 859 | T859I | aCt | aTt | 25 | 25 | B.1.438.1 | 0.002682 |
S | 859 | T859I | aCt | aTt | 24 | 24 | AY.4.2 | 0.000521 |
S | 859 | T859I | aCt | aTt | 22 | 22 | AY.120 | 0.000818 |
S | 859 | T859I | aCt | aTt | 22 | 22 | AY.9.2 | 0.000808 |
S | 859 | T859T | acT | acC | 18 | 22 | B.1.1.7 | 0.000016 |
S | 859 | T859T | acT | acA | 4 | 22 | B.1.1.7 | 0.000004 |
S | 859 | T859N | aCt | aAt | 22 | 22 | B.1.2 | 0.000194 |
S | 859 | T859I | aCt | aTt | 21 | 21 | B.1.1.318 | 0.006337 |
S | 859 | T859I | aCt | aTt | 21 | 21 | B.1.1.369 | 0.009371 |
S | 859 | T859N | aCt | aAt | 21 | 21 | B.1.576 | 0.019039 |
S | 859 | T859I | aCt | aTt | 20 | 20 | AY.99.2 | 0.001843 |
S | 859 | T859I | aCT | aTC | 19 | 20 | B.1.177.54 | 0.011522 |
S | 859 | T859I | aCt | aTt | 1 | 20 | B.1.177.54 | 0.000606 |
S | 859 | T859I | aCt | aTt | 20 | 20 | B.1.177.7 | 0.003297 |
S | 859 | T859N | aCt | aAt | 19 | 19 | AY.39 | 0.00047 |
S | 859 | T859I | aCt | aTt | 19 | 19 | AY.98 | 0.001501 |
S | 859 | T859I | aCt | aTt | 19 | 19 | B.1.1.216 | 0.016919 |
S | 859 | T859I | aCt | aTt | 19 | 19 | B.1.258 | 0.001264 |
S | 859 | T859T | acT | acC | 17 | 17 | AY.43 | 0.000075 |
S | 859 | T859I | aCt | aTt | 17 | 17 | AY.73 | 0.011311 |
S | 859 | T859I | aCt | aTt | 17 | 17 | B.1.36.31 | 0.029772 |
S | 859 | T859I | aCt | aTt | 17 | 17 | B.1.525 | 0.001924 |
S | 859 | T859N | aCt | aAt | 17 | 17 | B.1.633 | 0.708333 |
S | 859 | T859I | aCt | aTt | 16 | 16 | AY.26 | 0.000453 |
S | 859 | T859N | aCt | aAt | 16 | 16 | B.1.1.7 | 0.000014 |
S | 859 | T859I | aCt | aTt | 16 | 16 | B.1.526 | 0.000376 |
S | 859 | T859I | aCt | aTt | 14 | 14 | AY.61 | 0.001467 |
S | 859 | T859I | aCt | aTt | 14 | 14 | B.1.1.305 | 0.054054 |
S | 859 | T859I | aCt | aTt | 14 | 14 | B.1.1.521 | 0.074866 |
S | 859 | T859I | aCt | aTt | 14 | 14 | B.1.221 | 0.000994 |
S | 859 | T859N | aCt | aAt | 14 | 14 | P.1.15 | 0.003253 |
S | 859 | T859I | aCt | aTt | 13 | 13 | B.1.1.241 | 0.026915 |
S | 859 | T859I | aCt | aTt | 13 | 13 | B.1.177.10 | 0.011414 |
S | 859 | T859I | aCt | aTt | 13 | 13 | B.1.466.2 | 0.005086 |
S | 859 | T859I | aCt | aTt | 12 | 12 | AY.19 | 0.013683 |
S | 859 | T859N | aCt | aAt | 12 | 12 | B | 0.001534 |
S | 859 | T859I | aCt | aTt | 12 | 12 | B.1.1.214 | 0.000665 |
S | 859 | T859I | aCt | aTt | 12 | 12 | B.1.177.83 | 0.017778 |
S | 859 | T859N | aCt | aAt | 12 | 12 | B.1.638 | 0.631579 |
S | 859 | T859N | aCt | aAt | 11 | 11 | AY.36 | 0.00163 |
S | 859 | T859I | aCt | aTt | 11 | 11 | AY.5.4 | 0.003044 |
S | 859 | T859I | aCt | aTt | 11 | 11 | B.1.1.189 | 0.016641 |
S | 859 | T859N | aCt | aAt | 11 | 11 | B.1.1.372 | 0.007576 |
S | 859 | T859del | ACT | --- | 11 | 11 | B.1.177 | 0.000145 |
S | 859 | T859I | aCt | aTt | 11 | 11 | B.1.427 | 0.000555 |
S | 859 | T859I | aCt | aTt | 11 | 11 | B.1.501 | 0.080882 |
S | 859 | T859I | aCt | aTt | 11 | 11 | B.1.621 | 0.000974 |
S | 859 | T859del1 | Act | -ct | 5 | 10 | All | 0.000001 |
S | 859 | T859del1 | acT | ac- | 2 | 10 | All | 0 |
S | 859 | T859del1 | ACt | G-t | 1 | 10 | All | 0 |
S | 859 | T859del1 | ACT | -NG | 1 | 10 | All | 0 |
S | 859 | T859del1 | aCt | a-t | 1 | 10 | All | 0 |
S | 859 | T859I | aCt | aTt | 10 | 10 | AY.113 | 0.001424 |
S | 859 | T859T | acT | acC | 9 | 10 | AY.25 | 0.000054 |
S | 859 | T859T | acT | acA | 1 | 10 | AY.25 | 0.000006 |
S | 859 | T859I | aCt | aTt | 10 | 10 | AY.41 | 0.002939 |
S | 859 | T859I | aCt | aTt | 10 | 10 | AY.42 | 0.000402 |
S | 859 | T859I | aCt | aTt | 10 | 10 | AY.75 | 0.00056 |
S | 859 | T859I | aCt | aTt | 10 | 10 | B.1.1.363 | 0.05988 |
S | 859 | T859I | aCt | aTt | 10 | 10 | B.1.118 | 0.067114 |
S | 859 | T859I | aCt | aTt | 10 | 10 | B.1.177.53 | 0.023923 |
S | 859 | T859I | aCt | aTt | 10 | 10 | B.1.258.11 | 0.003964 |
S | 859 | T859N | aCt | aAt | 10 | 10 | P.1 | 0.000158 |
S | 859 | T859N | aCt | aAt | 9 | 9 | AY.103 | 0.000056 |
S | 859 | T859I | aCt | aTt | 9 | 9 | AY.114 | 0.00208 |
S | 859 | T859I | aCt | aTt | 9 | 9 | AY.36 | 0.001334 |
S | 859 | T859S | aCt | aGt | 9 | 9 | AY.99.2 | 0.000829 |
S | 859 | T859I | aCt | aTt | 9 | 9 | B.1.1.1 | 0.00294 |
S | 859 | T859I | aCt | aTt | 9 | 9 | B.1.1.33 | 0.003788 |
S | 859 | T859I | aCt | aTt | 8 | 8 | AY.39.1 | 0.000317 |
S | 859 | T859N | aCt | aAt | 8 | 8 | AY.44 | 0.000049 |
S | 859 | T859I | aCt | aTt | 8 | 8 | AY.46 | 0.000833 |
S | 859 | T859I | aCt | aTt | 8 | 8 | AY.84 | 0.0035 |
S | 859 | T859T | acT | acC | 7 | 8 | B.1 | 0.000064 |
S | 859 | T859T | acT | acA | 1 | 8 | B.1 | 0.000009 |
S | 859 | T859I | aCt | aTt | 8 | 8 | B.1.234 | 0.001056 |
S | 859 | T859I | aCt | aTt | 8 | 8 | B.1.236 | 0.016427 |
S | 859 | T859I | aCt | aTt | 8 | 8 | D.2 | 0.0006 |
S | 859 | T859I | aCt | aTt | 7 | 7 | AH.1 | 1 |
S | 859 | T859A | Act | Gct | 7 | 7 | AY.103 | 0.000043 |
S | 859 | T859N | aCt | aAt | 7 | 7 | AY.25 | 0.000042 |
S | 859 | T859del | ACT | --- | 7 | 7 | AY.4.5 | 0.000752 |
S | 859 | T859N | aCt | aAt | 7 | 7 | B.1.1.1 | 0.002287 |
S | 859 | T859N | aCt | aAt | 7 | 7 | B.1.1.28 | 0.002179 |
S | 859 | T859I | aCt | aTt | 7 | 7 | B.1.1.519 | 0.000278 |
S | 859 | T859I | aCt | aTt | 7 | 7 | B.1.160.16 | 0.006506 |
S | 859 | T859I | aCt | aTt | 7 | 7 | B.1.160.28 | 0.020468 |
S | 859 | T859N | aCt | aAt | 7 | 7 | B.1.177.73 | 0.003964 |
S | 859 | T859I | aCt | aTt | 7 | 7 | B.1.36.29 | 0.003621 |
S | 859 | T859N | aCt | aAt | 7 | 7 | B.1.632 | 0.04698 |
S | 859 | T859N | aCt | aAt | 7 | 7 | B.1.636 | 0.04698 |
S | 859 | T859I | aCt | aTt | 6 | 6 | AA.1 | 0.043478 |
S | 859 | T859I | aCt | aTt | 6 | 6 | AU.2 | 0.014528 |
S | 859 | T859I | aCt | aTt | 6 | 6 | AY.111 | 0.001099 |
S | 859 | T859I | aCt | aTt | 6 | 6 | AY.13 | 0.000966 |
S | 859 | T859A | Act | Gct | 6 | 6 | AY.4 | 0.000009 |
S | 859 | T859del | ACT | --- | 6 | 6 | AY.43 | 0.000027 |
S | 859 | T859A | Act | Gct | 6 | 6 | AY.44 | 0.000037 |
S | 859 | T859I | aCt | aTt | 6 | 6 | AY.53 | 0.001725 |
S | 859 | T859I | aCt | aTt | 6 | 6 | B.1.177.60 | 0.001311 |
S | 859 | T859N | aCt | aAt | 6 | 6 | B.1.177.7 | 0.000989 |
S | 859 | T859T | acT | acC | 6 | 6 | B.1.351 | 0.000178 |
S | 859 | T859I | aCt | aTt | 6 | 6 | B.1.362 | 0.009245 |
S | 859 | T859N | aCt | aAt | 6 | 6 | B.1.596 | 0.000523 |
S | 859 | T859I | aCt | aTt | 6 | 6 | B.1.617.1 | 0.000774 |
S | 859 | T859T | acT | acC | 3 | 6 | B.1.617.2 | 0.000011 |
S | 859 | T859T | acT | acA | 3 | 6 | B.1.617.2 | 0.000011 |
S | 859 | T859N | aCt | aAt | 6 | 6 | B.1.623 | 0.003219 |
S | 859 | T859T | acT | acC | 6 | 6 | P.1 | 0.000095 |
S | 859 | T859I | aCt | aTt | 5 | 5 | A | 0.001935 |
S | 859 | T859I | aCt | aTt | 5 | 5 | AY.117 | 0.000423 |
S | 859 | T859I | aCt | aTt | 5 | 5 | AY.20 | 0.000194 |
S | 859 | T859I | aCt | aTt | 5 | 5 | AY.45 | 0.000608 |
S | 859 | T859I | aCt | aTt | 5 | 5 | AY.46.4 | 0.000823 |
S | 859 | T859I | aCt | aTt | 5 | 5 | AY.62 | 0.002179 |
S | 859 | T859N | aCt | aAt | 5 | 5 | AY.84 | 0.002187 |
S | 859 | T859I | aCt | aTt | 5 | 5 | B.1.1.222 | 0.00102 |
S | 859 | T859I | aCt | aTt | 5 | 5 | B.1.177.12 | 0.000758 |
S | 859 | T859I | aCt | aTt | 5 | 5 | B.1.177.57 | 0.001405 |
S | 859 | T859I | aCt | aTt | 5 | 5 | B.1.218 | 0.025773 |
S | 859 | T859I | aCt | aTt | 5 | 5 | B.1.241 | 0.004058 |
S | 859 | T859N | aCt | aAt | 5 | 5 | B.1.36 | 0.00073 |
S | 859 | T859I | aCt | aTt | 5 | 5 | B.1.521 | 0.024876 |
S | 859 | T859I | aCt | aTt | 5 | 5 | B.1.561 | 0.001985 |
S | 859 | T859N | aCt | aAt | 5 | 5 | P.1.12 | 0.00242 |
S | 859 | T859N | aCt | aAt | 5 | 5 | P.5 | 0.068493 |
S | 859 | T859del2 | aCT | a-- | 2 | 4 | All | 0 |
S | 859 | T859del2 | ACt | --t | 2 | 4 | All | 0 |
S | 859 | T859T | acT | acC | 2 | 4 | AY.102 | 0.000053 |
S | 859 | T859T | acT | acA | 2 | 4 | AY.102 | 0.000053 |
S | 859 | T859S | aCt | aGt | 4 | 4 | AY.103 | 0.000025 |
S | 859 | T859I | aCt | aTt | 4 | 4 | AY.118 | 0.000251 |
S | 859 | T859I | aCt | aTt | 4 | 4 | AY.120.2.1 | 0.001993 |
S | 859 | T859N | aCt | aAt | 4 | 4 | AY.23 | 0.000279 |
S | 859 | T859N | aCt | aAt | 4 | 4 | AY.3 | 0.00004 |
S | 859 | T859T | acT | acC | 4 | 4 | AY.3 | 0.00004 |
S | 859 | T859I | aCt | aTt | 4 | 4 | AY.3.1 | 0.000341 |
S | 859 | T859I | aCt | aTt | 4 | 4 | AY.33 | 0.000267 |
S | 859 | T859del | ACT | --- | 4 | 4 | AY.4 | 0.000006 |
S | 859 | T859S | aCt | aGt | 4 | 4 | AY.4 | 0.000006 |
S | 859 | T859N | aCt | aAt | 4 | 4 | AY.4 | 0.000006 |
S | 859 | T859N | aCt | aAt | 4 | 4 | AY.42 | 0.000161 |
S | 859 | T859I | aCt | aTt | 4 | 4 | AY.65 | 0.002132 |
S | 859 | T859I | aCt | aTt | 4 | 4 | AY.75.1 | 0.000721 |
S | 859 | T859I | aCt | aTt | 4 | 4 | AY.9 | 0.00027 |
S | 859 | T859N | aCt | aAt | 4 | 4 | AY.9.2 | 0.000147 |
S | 859 | T859N | aCt | aAt | 4 | 4 | AY.98 | 0.000316 |
S | 859 | T859T | acT | acC | 4 | 4 | AZ.2 | 0.003284 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B | 0.000511 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B.1.1.28 | 0.001245 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B.1.1.311 | 0.001433 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B.1.1.50 | 0.002716 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B.1.170 | 0.017241 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B.1.177.21 | 0.000306 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B.1.177.86 | 0.000734 |
S | 859 | T859del | ACT | --- | 4 | 4 | B.1.2 | 0.000035 |
S | 859 | T859T | acT | acC | 3 | 4 | B.1.2 | 0.000026 |
S | 859 | T859T | acT | acA | 1 | 4 | B.1.2 | 0.000009 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B.1.239 | 0.004884 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B.1.36.8 | 0.004 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B.1.361 | 0.005155 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B.1.409 | 0.003125 |
S | 859 | T859N | aCt | aAt | 4 | 4 | B.1.427 | 0.000202 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B.1.428 | 0.004082 |
S | 859 | T859N | aCt | aAt | 4 | 4 | B.1.618 | 0.016129 |
S | 859 | T859I | aCt | aTt | 4 | 4 | B.1.625 | 0.009412 |
S | 859 | T859I | aCt | aTt | 4 | 4 | C.38 | 0.032258 |
S | 859 | T859N | aCt | aAt | 4 | 4 | P.1.1 | 0.001271 |
S | 859 | T859I | aCt | aTt | 4 | 4 | P.1.14 | 0.000191 |
S | 859 | T859I | aCt | aTt | 4 | 4 | P.5 | 0.054795 |
S | 859 | T859I | aCt | aTt | 4 | 4 | W.4 | 0.005405 |
S | 859 | T859I | aCt | aTt | 3 | 3 | AY.121 | 0.000406 |
S | 859 | T859N | aCt | aAt | 3 | 3 | AY.13 | 0.000483 |
S | 859 | T859I | aCt | aTt | 3 | 3 | AY.16 | 0.001139 |
S | 859 | T859N | aCt | aAt | 3 | 3 | AY.26 | 0.000085 |
S | 859 | T859I | aCt | aTt | 3 | 3 | AY.32 | 0.001597 |
S | 859 | T859I | aCt | aTt | 3 | 3 | AY.4.2.1 | 0.000447 |
S | 859 | T859A | Act | Gct | 3 | 3 | AY.43 | 0.000013 |
S | 859 | T859N | aCt | aAt | 3 | 3 | AY.45 | 0.000365 |
S | 859 | T859N | aCt | aAt | 3 | 3 | AY.46 | 0.000312 |
S | 859 | T859I | aCt | aTt | 3 | 3 | AY.46.6 | 0.000217 |
S | 859 | T859del | ACT | --- | 3 | 3 | AY.5 | 0.000062 |
S | 859 | T859N | aCt | aAt | 3 | 3 | AY.5 | 0.000062 |
S | 859 | T859I | aCt | aTt | 3 | 3 | AY.9.1 | 0.000251 |
S | 859 | T859del | ACT | --- | 3 | 3 | B.1 | 0.000027 |
S | 859 | T859I | aCt | aTt | 3 | 3 | B.1.1.170 | 0.003741 |
S | 859 | T859I | aCt | aTt | 3 | 3 | B.1.1.192 | 0.006928 |
S | 859 | T859I | aCt | aTt | 3 | 3 | B.1.1.277 | 0.002276 |
S | 859 | T859T | acT | acG | 3 | 3 | B.1.1.306 | 0.001315 |
S | 859 | T859N | aCt | aAt | 3 | 3 | B.1.1.412 | 0.022901 |
S | 859 | T859I | aCt | aTt | 3 | 3 | B.1.1.434 | 0.001046 |
S | 859 | T859N | aCt | aAt | 3 | 3 | B.1.1.507 | 0.026087 |
S | 859 | T859N | aCt | aAt | 3 | 3 | B.1.1.528 | 0.014423 |
S | 859 | T859del1 | Act | -ct | 2 | 3 | B.1.1.7 | 0.000002 |
S | 859 | T859del1 | acT | ac- | 1 | 3 | B.1.1.7 | 0.000001 |
S | 859 | T859del | ACT | --- | 3 | 3 | B.1.177.4 | 0.000633 |
S | 859 | T859I | aCt | aTt | 3 | 3 | B.1.177.56 | 0.002003 |
S | 859 | T859N | aCt | aAt | 3 | 3 | B.1.351 | 0.000089 |
S | 859 | T859I | aCt | aTt | 3 | 3 | B.1.369 | 0.000856 |
S | 859 | T859I | aCt | aTt | 3 | 3 | B.1.381 | 0.023438 |
S | 859 | T859I | aCt | aTt | 3 | 3 | B.1.471 | 0.008197 |
S | 859 | T859I | aCt | aTt | 3 | 3 | B.1.527 | 0.011111 |
S | 859 | T859I | aCt | aTt | 3 | 3 | B.1.595 | 0.000783 |
S | 859 | T859I | aCt | aTt | 3 | 3 | B.1.604 | 0.051724 |
S | 859 | T859I | aCt | aTt | 3 | 3 | B.1.609 | 0.001438 |
S | 859 | T859N | aCt | aAt | 3 | 3 | B.1.609 | 0.001438 |
S | 859 | T859I | aCt | aTt | 3 | 3 | C.30 | 0.005181 |
S | 859 | T859N | aCt | aAt | 3 | 3 | C.39 | 0.056604 |
S | 859 | T859I | aCt | aTt | 2 | 3 | P.1.15 | 0.000465 |
S | 859 | T859I | aCT | aTC | 1 | 3 | P.1.15 | 0.000232 |
S | 859 | T859N | aCt | aAt | 3 | 3 | P.1.17 | 0.000485 |
S | 859 | T859N | aCt | aAt | 3 | 3 | Q.8 | 0.000495 |
S | 859 | T859del | ACT | --- | 2 | 2 | 0.111111 | |
S | 859 | T859T | acT | acA | 2 | 2 | A.1 | 0.000564 |
S | 859 | T859I | aCt | aTt | 2 | 2 | AD.2 | 0.000438 |
S | 859 | T859I | aCt | aTt | 2 | 2 | AY.105 | 0.001286 |
S | 859 | T859I | aCt | aTt | 2 | 2 | AY.107 | 0.000932 |
S | 859 | T859I | aCt | aTt | 2 | 2 | AY.108 | 0.002205 |
S | 859 | T859N | aCt | aAt | 2 | 2 | AY.108 | 0.002205 |
S | 859 | T859I | aCt | aTt | 2 | 2 | AY.116 | 0.000574 |
S | 859 | T859T | acT | acC | 2 | 2 | AY.117 | 0.000169 |
S | 859 | T859T | acT | acC | 2 | 2 | AY.120 | 0.000074 |
S | 859 | T859I | aCt | aTt | 2 | 2 | AY.16.1 | 0.00094 |
S | 859 | T859A | Act | Gct | 2 | 2 | AY.33 | 0.000134 |
S | 859 | T859del | ACT | --- | 2 | 2 | AY.36 | 0.000296 |
S | 859 | T859I | aCt | aTt | 2 | 2 | AY.38 | 0.000999 |
S | 859 | T859T | acT | acC | 2 | 2 | AY.39 | 0.000049 |
S | 859 | T859del | ACT | --- | 2 | 2 | AY.39 | 0.000049 |
S | 859 | T859I | aCt | aTt | 2 | 2 | AY.4.5 | 0.000215 |
S | 859 | T859S | Act | Tct | 2 | 2 | AY.42 | 0.00008 |
S | 859 | T859del1 | ACT | -NG | 1 | 2 | AY.43 | 0.000004 |
S | 859 | T859del1 | acT | ac- | 1 | 2 | AY.43 | 0.000004 |
S | 859 | T859N | aCt | aAt | 2 | 2 | AY.5.3 | 0.000675 |
S | 859 | T859N | aCt | aAt | 2 | 2 | AY.52 | 0.001629 |
S | 859 | T859I | aCt | aTt | 2 | 2 | AY.6 | 0.000082 |
S | 859 | T859N | aCt | aAt | 2 | 2 | AY.61 | 0.00021 |
S | 859 | T859I | aCt | aTt | 2 | 2 | AY.69 | 0.000373 |
S | 859 | T859I | aCt | aTt | 2 | 2 | AY.71 | 0.00095 |
S | 859 | T859S | aCt | aGt | 2 | 2 | AY.9.2 | 0.000073 |
S | 859 | T859T | acT | acC | 2 | 2 | AY.9.2 | 0.000073 |
S | 859 | T859del | ACT | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.1.265 | 0.006309 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.1.291 | 0.001485 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.1.294 | 0.002532 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.1.318 | 0.000604 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.1.370 | 0.025316 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.1.519 | 0.000079 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.1.63 | 0.000772 |
S | 859 | T859S | aCt | aGt | 1 | 2 | B.1.1.7 | 0.000001 |
S | 859 | T859S | Act | Tct | 1 | 2 | B.1.1.7 | 0.000001 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.110.3 | 0.001437 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.111 | 0.00235 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.160 | 0.000062 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.160.14 | 0.004237 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.177 | 0.000026 |
S | 859 | T859del | ACT | --- | 2 | 2 | B.1.177.16 | 0.001329 |
S | 859 | T859del | ACT | --- | 2 | 2 | B.1.177.63 | 0.005405 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.177.73 | 0.001133 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.206 | 0.001631 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.311 | 0.000549 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.311 | 0.000549 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.336 | 0.004878 |
S | 859 | T859A | Act | Gct | 2 | 2 | B.1.351 | 0.000059 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.36.1 | 0.002281 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.36.16 | 0.002849 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.36.18 | 0.00084 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.36.27 | 0.001527 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.36.31 | 0.003503 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.36.8 | 0.002 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.396 | 0.001411 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.404 | 0.002604 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.404 | 0.002604 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.413 | 0.008511 |
S | 859 | T859T | acT | acA | 1 | 2 | B.1.466.2 | 0.000391 |
S | 859 | T859T | acT | acC | 1 | 2 | B.1.466.2 | 0.000391 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.470 | 0.002809 |
S | 859 | T859I | aCt | aTt | 2 | 2 | B.1.582 | 0.000981 |
S | 859 | T859A | Act | Gct | 2 | 2 | B.1.617.2 | 0.000008 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.621 | 0.000177 |
S | 859 | T859N | aCt | aAt | 2 | 2 | B.1.9.5 | 0.011364 |
S | 859 | T859N | aCt | aAt | 2 | 2 | C.1 | 0.004785 |
S | 859 | T859I | aCt | aTt | 2 | 2 | C.36 | 0.001821 |
S | 859 | T859I | aCt | aTt | 2 | 2 | N.6 | 0.014184 |
S | 859 | T859A | Act | Gct | 2 | 2 | P.1 | 0.000032 |
S | 859 | T859S | aCt | aGt | 2 | 2 | P.1 | 0.000032 |
S | 859 | T859I | aCt | aTt | 2 | 2 | P.1.17 | 0.000324 |
S | 859 | T859S | aCt | aGt | 1 | 1 | A | 0.000387 |
S | 859 | T859del | ACT | --- | 1 | 1 | A | 0.000387 |
S | 859 | T859N | aCt | aAt | 1 | 1 | A.2 | 0.000662 |
S | 859 | T859N | aCt | aAt | 1 | 1 | A.2.5 | 0.000499 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AA.5 | 0.016129 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AE.8 | 0.000489 |
S | 859 | T859del | ACT | --- | 1 | 1 | AH.3 | 0.003802 |
S | 859 | T859P | Act | Cct | 1 | 1 | All | 0 |
S | 859 | T859M | aCT | aTG | 1 | 1 | All | 0 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AP.1 | 0.001502 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.100 | 0.000046 |
S | 859 | T859S | aCt | aGt | 1 | 1 | AY.102 | 0.000027 |
S | 859 | T859M | aCT | aTG | 1 | 1 | AY.103 | 0.000006 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.107 | 0.000466 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.110 | 0.000113 |
S | 859 | T859del2 | ACt | --t | 1 | 1 | AY.117 | 0.000085 |
S | 859 | T859A | AcT | GcG | 1 | 1 | AY.117 | 0.000085 |
S | 859 | T859A | Act | Gct | 1 | 1 | AY.119 | 0.000035 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.119 | 0.000035 |
S | 859 | T859S | Act | Tct | 1 | 1 | AY.119 | 0.000035 |
S | 859 | T859T | acT | acC | 1 | 1 | AY.119 | 0.000035 |
S | 859 | T859del | ACT | --- | 1 | 1 | AY.120 | 0.000037 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.120 | 0.000037 |
S | 859 | T859S | aCt | aGt | 1 | 1 | AY.14 | 0.000088 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.14 | 0.000088 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.15 | 0.002222 |
S | 859 | T859del1 | aCt | a-t | 1 | 1 | AY.16 | 0.00038 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.2 | 0.000356 |
S | 859 | T859S | aCt | aGt | 1 | 1 | AY.25 | 0.000006 |
S | 859 | T859del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
S | 859 | T859S | aCt | aGt | 1 | 1 | AY.26 | 0.000028 |
S | 859 | T859T | acT | acA | 1 | 1 | AY.29 | 0.000016 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.29.1 | 0.000221 |
S | 859 | T859del | ACT | --- | 1 | 1 | AY.3 | 0.00001 |
S | 859 | T859S | aCt | aGt | 1 | 1 | AY.3 | 0.00001 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.3.1 | 0.000085 |
S | 859 | T859A | Act | Gct | 1 | 1 | AY.30 | 0.000396 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.30 | 0.000396 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.30 | 0.000396 |
S | 859 | T859A | Act | Gct | 1 | 1 | AY.32 | 0.000532 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.35 | 0.000233 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.35 | 0.000233 |
S | 859 | T859del | ACT | --- | 1 | 1 | AY.37 | 0.000316 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.39.1 | 0.00004 |
S | 859 | T859del2 | ACt | --t | 1 | 1 | AY.4 | 0.000002 |
S | 859 | T859del1 | Act | -ct | 1 | 1 | AY.4 | 0.000002 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.4.2 | 0.000022 |
S | 859 | T859S | aCt | aGt | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 859 | T859S | aCt | aGt | 1 | 1 | AY.43 | 0.000004 |
S | 859 | T859del | ACT | --- | 1 | 1 | AY.44 | 0.000006 |
S | 859 | T859S | Act | Tct | 1 | 1 | AY.44 | 0.000006 |
S | 859 | T859T | acT | acA | 1 | 1 | AY.44 | 0.000006 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.46.1 | 0.001027 |
S | 859 | T859del | ACT | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 859 | T859S | Act | Tct | 1 | 1 | AY.5 | 0.000021 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.52 | 0.000814 |
S | 859 | T859T | acT | acC | 1 | 1 | AY.55 | 0.000917 |
S | 859 | T859S | Act | Tct | 1 | 1 | AY.55 | 0.000917 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.55 | 0.000917 |
S | 859 | T859del1 | ACt | G-t | 1 | 1 | AY.55 | 0.000917 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.57 | 0.000656 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.58 | 0.000907 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.60 | 0.000938 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.60 | 0.000938 |
S | 859 | T859del | ACT | --- | 1 | 1 | AY.65 | 0.000533 |
S | 859 | T859A | Act | Gct | 1 | 1 | AY.65 | 0.000533 |
S | 859 | T859del | ACT | --- | 1 | 1 | AY.68 | 0.000274 |
S | 859 | T859T | acT | acG | 1 | 1 | AY.7.2 | 0.000559 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.70 | 0.000209 |
S | 859 | T859del | ACT | --- | 1 | 1 | AY.72 | 0.001361 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.74 | 0.000116 |
S | 859 | T859del | ACT | --- | 1 | 1 | AY.75 | 0.000056 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.80 | 0.001129 |
S | 859 | T859del | ACT | --- | 1 | 1 | AY.81 | 0.001992 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.88 | 0.000884 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.89 | 0.004902 |
S | 859 | T859A | Act | Gct | 1 | 1 | AY.9.2 | 0.000037 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.92 | 0.000287 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.93 | 0.000273 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.99 | 0.001049 |
S | 859 | T859del | ACT | --- | 1 | 1 | AY.99.1 | 0.001553 |
S | 859 | T859I | aCt | aTt | 1 | 1 | AY.99.1 | 0.001553 |
S | 859 | T859N | aCt | aAt | 1 | 1 | AY.99.2 | 0.000092 |
S | 859 | T859P | Act | Cct | 1 | 1 | B.1 | 0.000009 |
S | 859 | T859S | aCt | aGt | 1 | 1 | B.1.1 | 0.000018 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.121 | 0.002427 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.176 | 0.000439 |
S | 859 | T859A | Act | Gct | 1 | 1 | B.1.1.176 | 0.000439 |
S | 859 | T859T | acT | acA | 1 | 1 | B.1.1.186 | 0.003436 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.190 | 0.05 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.198 | 0.001468 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.213 | 0.021739 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.1.218 | 0.007692 |
S | 859 | T859T | acT | acA | 1 | 1 | B.1.1.218 | 0.007692 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.220 | 0.001859 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.1.220 | 0.001859 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.1.222 | 0.000204 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.231 | 0.003096 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.265 | 0.003155 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.27 | 0.00565 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.1.28 | 0.000311 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.1.335 | 0.012987 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.348 | 0.000796 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.1.348 | 0.000796 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.358 | 0.034483 |
S | 859 | T859T | acT | acG | 1 | 1 | B.1.1.369 | 0.000446 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.39 | 0.00051 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.397 | 0.002252 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.409 | 0.002833 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.1.409 | 0.002833 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.41 | 0.006329 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.413 | 0.006897 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.1.413 | 0.006897 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.435 | 0.034483 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.1.448 | 0.002033 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.47 | 0.005348 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.48 | 0.002874 |
S | 859 | T859S | Act | Tct | 1 | 1 | B.1.1.519 | 0.00004 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.1.70 | 0.000341 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.127 | 0.002198 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.146 | 0.004237 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.149 | 0.003425 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.160 | 0.000031 |
S | 859 | T859del2 | aCT | a-- | 1 | 1 | B.1.160 | 0.000031 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.160.7 | 0.002079 |
S | 859 | T859A | Act | Gct | 1 | 1 | B.1.177.16 | 0.000664 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.177.18 | 0.00116 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.177.21 | 0.000076 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.177.28 | 0.007407 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.177.44 | 0.000519 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.177.44 | 0.000519 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.177.48 | 0.003125 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.177.52 | 0.001757 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.177.65 | 0.000665 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.177.69 | 0.001484 |
S | 859 | T859T | acT | acC | 1 | 1 | B.1.177.7 | 0.000165 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.177.76 | 0.002494 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.177.79 | 0.002342 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.177.81 | 0.000189 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.177.82 | 0.000477 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.179 | 0.003759 |
S | 859 | T859S | aCt | aGt | 1 | 1 | B.1.206 | 0.000816 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.208 | 0.04 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.214 | 0.003663 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.214.2 | 0.0006 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.22 | 0.001318 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.221 | 0.000071 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.222 | 0.001692 |
S | 859 | T859A | Act | Gct | 1 | 1 | B.1.234 | 0.000132 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.240 | 0.000216 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.241 | 0.000812 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.243 | 0.00007 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.243.1 | 0.022222 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.258 | 0.000067 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.258.14 | 0.00098 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.265 | 0.001271 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.280 | 0.007143 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.3 | 0.002618 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.320 | 0.001245 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.324 | 0.001605 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.329 | 0.000608 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.338 | 0.008621 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.338 | 0.008621 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.346 | 0.001311 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.349 | 0.000715 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.35 | 0.008475 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.350 | 0.002933 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.351.2 | 0.000303 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.356 | 0.001727 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.36.10 | 0.004785 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.36.22 | 0.001208 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.36.28 | 0.005747 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.36.39 | 0.002217 |
S | 859 | T859T | acT | acA | 1 | 1 | B.1.362.1 | 0.066667 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.366 | 0.004878 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.367 | 0.000792 |
S | 859 | T859T | acT | acC | 1 | 1 | B.1.369 | 0.000285 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.375 | 0.00082 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.375 | 0.00082 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.389 | 0.001002 |
S | 859 | T859S | aCt | aGt | 1 | 1 | B.1.396 | 0.000706 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.398 | 0.002976 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.399 | 0.001934 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.411 | 0.003704 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.411 | 0.003704 |
S | 859 | T859T | acT | acC | 1 | 1 | B.1.422 | 0.000812 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.426 | 0.001009 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.429 | 0.000024 |
S | 859 | T859A | Act | Gct | 1 | 1 | B.1.429 | 0.000024 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.439 | 0.005917 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.444 | 0.015873 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.451 | 0.008197 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.456 | 0.003268 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.462 | 0.007246 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.497 | 0.000315 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.503 | 0.002488 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.515 | 0.014493 |
S | 859 | T859del2 | aCT | a-- | 1 | 1 | B.1.526 | 0.000024 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.533 | 0.009615 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.565 | 0.00081 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.570 | 0.002941 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.575 | 0.000303 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.575 | 0.000303 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.580 | 0.004065 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.582 | 0.000491 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.589 | 0.007576 |
S | 859 | T859T | acT | acC | 1 | 1 | B.1.596 | 0.000087 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.596 | 0.000087 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.605 | 0.005952 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.617.1 | 0.000129 |
S | 859 | T859S | aCt | aGt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.617.3 | 0.002985 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.619.1 | 0.000641 |
S | 859 | T859A | Act | Gct | 1 | 1 | B.1.621 | 0.000089 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.621.1 | 0.000506 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.1.623 | 0.000536 |
S | 859 | T859N | aCt | aAt | 1 | 1 | B.1.628 | 0.000352 |
S | 859 | T859S | aCt | aGt | 1 | 1 | B.1.637 | 0.000073 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.1.637 | 0.000073 |
S | 859 | T859del1 | Act | -ct | 1 | 1 | B.1.78 | 0.008547 |
S | 859 | T859del | ACT | --- | 1 | 1 | B.3 | 0.000831 |
S | 859 | T859I | aCt | aTt | 1 | 1 | B.4.1 | 0.018868 |
S | 859 | T859N | aCt | aAt | 1 | 1 | C.14 | 0.004329 |
S | 859 | T859N | aCt | aAt | 1 | 1 | C.35 | 0.000774 |
S | 859 | T859I | aCt | aTt | 1 | 1 | C.36.3 | 0.000567 |
S | 859 | T859N | aCt | aAt | 1 | 1 | C.4 | 0.01 |
S | 859 | T859T | acT | acA | 1 | 1 | D.2 | 0.000075 |
S | 859 | T859S | Act | Tct | 1 | 1 | D.2 | 0.000075 |
S | 859 | T859del | ACT | --- | 1 | 1 | D.2 | 0.000075 |
S | 859 | T859del1 | Act | -ct | 1 | 1 | D.2 | 0.000075 |
S | 859 | T859I | aCt | aTt | 1 | 1 | P.1.1 | 0.000318 |
S | 859 | T859del | ACT | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 859 | T859del | ACT | --- | 1 | 1 | P.1.12 | 0.000484 |
S | 859 | T859del | ACT | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 859 | T859I | aCt | aTt | 1 | 1 | P.1.13 | 0.000898 |
S | 859 | T859del | ACT | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 859 | T859T | acT | acC | 1 | 1 | P.1.15 | 0.000232 |
S | 859 | T859N | aCt | aAt | 1 | 1 | P.1.16 | 0.000374 |
S | 859 | T859I | aCt | aTt | 1 | 1 | P.1.7 | 0.000319 |
S | 859 | T859T | acT | acC | 1 | 1 | P.2 | 0.000187 |
S | 859 | T859I | aCt | aTt | 1 | 1 | Q.1 | 0.000126 |
S | 859 | T859I | aCt | aTt | 1 | 1 | Q.2 | 0.000613 |
S | 859 | T859N | aCt | aAt | 1 | 1 | Q.4 | 0.000455 |
S | 859 | T859del | ACT | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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