CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 856 & Codon = aaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S856N856NsynaaCaaT6089360893124128-24130

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S856N856NaaCaaT6089360893All0.011647
S856N856NaaCaaT3947839478AY.430.174906
S856N856NaaCaaT56595659B.1.617.20.021308
S856N856NaaCaaT48024802AY.1000.220924
S856N856NaaCaaT23192319B.1.1.70.002076
S856N856NaaCaaT14081408AY.640.838095
S856N856NaaCaaT862862B.1.20.00759
S856N856NaaCaaT686686AY.40.001068
S856N856NaaCaaT547547AY.250.00329
S856N856NaaCaaT342342P.10.005388
S856N856NaaCaaT217217B.10.001988
S856N856NaaCaaT179179AY.1030.001111
S856N856NaaCaaT164164AY.440.000998
S856N856NaaCaaT160160AY.99.20.014745
S856N856NaaCaaT135135B.1.1.2400.633803
S856N856NaaCaaT135135B.1.1770.001778
S856N856NaaCaaT129129AY.30.001283
S856N856NaaCaaT126126B.1.1.5190.005004
S856N856NaaCaaT122122P.1.140.005832
S856N856NaaCaaT121121AY.720.164626
S856N856NaaCaaT121121B.1.4290.002847
S856N856NaaCaaT111111AY.690.020721
S856N856NaaCaaT106106B.1.1600.003306
S856N856NaaCaaT102102AY.4.20.002212
S856N856NaaCaaT9797AY.1020.002572
S856N856NaaCaaT8787B.1.4270.004393
S856N856NaaCaaT7979AY.1160.022656
S856N856NaaCaaT7979AY.390.001952
S856N856NaaCaaT7979B.1.10.001433
S856N856NaaCaaT7171AY.420.002856
S856N856NaaCaaT6868AY.840.029746
S856N856NaaCaaT6565B.1.1.280.02023
S856N856NaaCaaT5959AY.1170.004986
S856N856NaaCaaT5656B.1.2430.003897
S856N856NaaCaaT5353AY.260.0015
S856N856NaaCaaT4949AY.930.013381
S856N856NaaCaaT4949B.1.2580.003261
S856N856NaaCaaT4646AY.98.10.002228
S856N856NaaCaaT4545AY.1180.002819
S856N856NaaCaaT4444AY.980.003476
S856N856NaaCaaT4242B.1.5640.017888
S856N856NaaCaaT4242C.36.30.023823
S856N856NaaCaaT4141AY.1210.005548
S856N856NaaCaaT3939AY.50.000805
S856N856NaaCaaT3838AY.1110.00696
S856N856NaaCaaT3434AY.470.001058
S856N856NaaCaaT3333B.1.1.3060.014467
S856N856NaaCaaT3232B.1.5260.000752
S856N856NaaCaaT3030AY.60.001234
S856N856NaaCaaT2929AY.1200.001078
S856N856NaaCaaT2929AY.650.015458
S856N856NaaCaaT2828B.1.5960.00244
S856N856NaaCaaT2727AY.1130.003845
S856N856NaaCaaT2626B.1.3510.000773
S856N856NaaCaaT2525AY.330.001669
S856N856NaaCaaT2525B.1.1.330.010522
S856N856NaaCaaT2424B.1.177.670.183206
S856N856NaaCaaT2424B.1.2340.003167
S856N856NaaCaaT2424B.1.6210.002124
S856N856NaaCaaT2222AY.5.30.007422
S856N856NaaCaaT2222AY.9.10.001842
S856N856NaaCaaT2222AY.9.20.000808
S856N856NaaCaaT2222B.1.5950.005741
S856N856NaaCaaT2121B0.002684
S856N856NaaCaaT2020AY.290.000315
S856N856NaaCaaT2020AY.610.002096
S856N856NaaCaaT2020B.1.360.002918
S856N856NaaCaaT2020C.370.002321
S856N856NaaCaaT1919L.20.215909
S856N856NaaCaaT1818AY.3.10.001535
S856N856NaaCaaT1616AY.230.001116
S856N856NaaCaaT1616AY.450.001947
S856N856NaaCaaT1616AY.670.007428
S856N856NaaCaaT1515AY.1050.009646
S856N856NaaCaaT1515AY.1190.00053
S856N856NaaCaaT1515AY.240.006466
S856N856NaaCaaT1515AY.920.004309
S856N856NaaCaaT1515B.1.5740.032258
S856N856NaaCaaT1414B.1.4740.026616
S856N856NaaCaaT1313AY.130.002093
S856N856NaaCaaT1313AY.39.10.000515
S856N856NaaCaaT1313B.1.1.1760.005712
S856N856NaaCaaT1313B.1.177.600.00284
S856N856NaaCaaT1313B.1.438.10.001394
S856N856NaaCaaT1313P.1.10.00413
S856N856NaaCaaT1212AY.270.000777
S856N856NaaCaaT1212AY.540.001144
S856N856NaaCaaT1212AY.750.000672
S856N856NaaCaaT1212AY.90.000811
S856N856NaaCaaT1212AY.910.008766
S856N856NaaCaaT1212B.1.2210.000852
S856N856NaaCaaT1212B.1.3910.013529
S856N856NaaCaaT1111AY.1010.005395
S856N856NaaCaaT1111AY.780.016949
S856N856NaaCaaT1111B.1.1.3180.003319
S856N856NaaCaaT1111B.1.617.10.001419
S856N856NaaCaaT1010AY.46.60.000722
S856N856NaaCaaT1010B.1.160.280.02924
S856N856NaaCaaT1010B.1.2030.625
S856N856NaaCaaT1010B.1.2390.01221
S856N856NaaCaaT99AY.340.000873
S856N856NaaCaaT99AY.34.10.004589
S856N856NaaCaaT99AY.460.000937
S856N856NaaCaaT88AY.200.000311
S856N856NaaCaaT88AY.320.00426
S856N856NaaCaaT88D.20.0006
S856N856NaaCaaT88P.1.120.003872
S856N856NaaCaaT77AY.1040.013889
S856N856NaaCaaT77AY.1100.000789
S856N856NaaCaaT77AY.190.007982
S856N856NaaCaaT77AY.380.003495
S856N856NaaCaaT77AY.730.004657
S856N856NaaCaaT77AY.75.10.001262
S856N856NaaCaaT77AY.990.007345
S856N856NaaCaaT77B.1.1.1440.2
S856N856NaaCaaT77B.1.1.2220.001428
S856N856NaaCaaT77B.1.1.2860.02029
S856N856NaaCaaT77B.1.177.860.001284
S856N856NaaCaaT77B.1.36.170.003458
S856N856NaaCaaT77B.1.36.180.002941
S856N856NaaCaaT77B.1.6370.000512
S856N856NaaCaaT77Q.10.000884
S856N856NaaCaaT77Q.30.001015
S856N856NaaCaaT66AY.360.000889
S856N856NaaCaaT66AY.620.002614
S856N856NaaCaaT66AY.850.002563
S856N856NaaCaaT66B.1.1.1890.009077
S856N856NaaCaaT66B.1.36.280.034483
S856N856NaaCaaT55AY.20.001781
S856N856NaaCaaT55AY.5.40.001384
S856N856NaaCaaT55AY.740.000578
S856N856NaaCaaT55AY.830.008621
S856N856NaaCaaT55B.1.1.1570.004566
S856N856NaaCaaT55B.1.1.3170.002058
S856N856NaaCaaT55B.1.2180.025773
S856N856NaaCaaT55B.1.2350.012594
S856N856NaaCaaT55B.1.2400.001078
S856N856NaaCaaT55B.1.3690.001426
S856N856NaaCaaT55B.1.416.10.007812
S856N856NaaCaaT55B.1.6000.02924
S856N856NaaCaaT55P.1.150.001162
S856N856NaaCaaT55R.10.00045
S856N856NaaCaaT44AY.10.001583
S856N856NaaCaaT44AY.1080.00441
S856N856NaaCaaT44AY.370.001264
S856N856NaaCaaT44AY.4.50.00043
S856N856NaaCaaT44AY.46.20.002541
S856N856NaaCaaT44AY.550.00367
S856N856NaaCaaT44B.1.1.2140.000222
S856N856NaaCaaT44B.1.160.170.006803
S856N856NaaCaaT44B.1.36.220.004831
S856N856NaaCaaT44B.1.36.290.002069
S856N856NaaCaaT44B.1.4080.01476
S856N856NaaCaaT44B.1.466.10.028777
S856N856NaaCaaT44B.1.4700.005618
S856N856NaaCaaT44B.1.5170.001708
S856N856NaaCaaT44P.20.000747
S856N856NaaCaaT33AE.80.001467
S856N856NaaCaaT33AY.100.00159
S856N856NaaCaaT33AY.16.10.00141
S856N856NaaCaaT33AY.210.005693
S856N856NaaCaaT33AY.530.000863
S856N856NaaCaaT33AY.600.002814
S856N856NaaCaaT33AY.700.000626
S856N856NaaCaaT33AY.860.00249
S856N856NaaCaaT33AY.880.002653
S856N856NaaCaaT33B.1.1.2160.002671
S856N856NaaCaaT33B.1.1.2940.003797
S856N856NaaCaaT33B.1.1.3620.016854
S856N856NaaCaaT33B.1.1.670.013699
S856N856NaaCaaT33B.1.130.007126
S856N856NaaCaaT33B.1.177.210.000229
S856N856NaaCaaT33B.1.177.320.004049
S856N856NaaCaaT33B.1.177.60.00293
S856N856NaaCaaT33B.1.2320.001612
S856N856NaaCaaT33B.1.258.140.002941
S856N856NaaCaaT33B.1.258.160.00491
S856N856NaaCaaT33B.1.3490.002144
S856N856NaaCaaT33B.1.3960.002117
S856N856NaaCaaT33B.1.4330.009585
S856N856NaaCaaT33B.1.4590.012245
S856N856NaaCaaT33B.1.466.20.001174
S856N856NaaCaaT33B.1.6090.001438
S856N856NaaCaaT33B.1.910.006224
S856N856NaaCaaT33L.30.010638
S856N856NaaCaaT22A0.000774
S856N856NaaCaaT22A.23.10.001408
S856N856NaaCaaT22AE.60.076923
S856N856NaaCaaT22AU.10.002532
S856N856NaaCaaT22AY.1060.00067
S856N856NaaCaaT22AY.1140.000462
S856N856NaaCaaT22AY.150.004444
S856N856NaaCaaT22AY.29.10.000441
S856N856NaaCaaT22AY.350.000466
S856N856NaaCaaT22AY.400.001929
S856N856NaaCaaT22AY.410.000588
S856N856NaaCaaT22AY.46.10.002053
S856N856NaaCaaT22AY.46.40.000329
S856N856NaaCaaT22AY.46.50.000397
S856N856NaaCaaT22AY.480.00093
S856N856NaaCaaT22AY.660.002139
S856N856NaaCaaT22AY.7.10.000225
S856N856NaaCaaT22AY.710.00095
S856N856NaaCaaT22AY.770.002255
S856N856NaaCaaT22AY.790.002421
S856N856NaaCaaT22AY.950.001522
S856N856NaaCaaT22B.1.1.1210.004854
S856N856NaaCaaT22B.1.1.2310.006192
S856N856NaaCaaT22B.1.1.250.001137
S856N856NaaCaaT22B.1.1.2840.000215
S856N856NaaCaaT22B.1.1.3110.000716
S856N856NaaCaaT22B.1.1.4240.090909
S856N856NaaCaaT22B.1.1.5260.007092
S856N856NaaCaaT22B.1.1.630.000772
S856N856NaaCaaT22B.1.1.700.000682
S856N856NaaCaaT22B.1.1040.00738
S856N856NaaCaaT22B.1.1390.001466
S856N856NaaCaaT22B.1.1460.008475
S856N856NaaCaaT22B.1.177.350.001382
S856N856NaaCaaT22B.1.177.570.000562
S856N856NaaCaaT22B.1.177.650.001331
S856N856NaaCaaT22B.1.177.70.00033
S856N856NaaCaaT22B.1.177.740.030303
S856N856NaaCaaT22B.1.214.20.001199
S856N856NaaCaaT22B.1.258.170.000208
S856N856NaaCaaT22B.1.351.20.000605
S856N856NaaCaaT22B.1.4160.002538
S856N856NaaCaaT22B.1.5090.001732
S856N856NaaCaaT22B.1.5250.000226
S856N856NaaCaaT22B.1.5500.027397
S856N856NaaCaaT22B.1.5820.000981
S856N856NaaCaaT22B.1.6230.001073
S856N856NaaCaaT22B.530.023529
S856N856NaaCaaT22B.6.60.001778
S856N856NaaCaaT22M.30.153846
S856N856NaaCaaT22P.1.170.000324
S856N856NaaCaaT22P.1.20.002312
S856N856NaaCaaT22P.1.40.001953
S856N856NaaCaaT11A.2.20.001689
S856N856NaaCaaT11AE.50.018519
S856N856NaaCaaT11AY.1070.000466
S856N856NaaCaaT11AY.1090.00074
S856N856NaaCaaT11AY.1150.005208
S856N856NaaCaaT11AY.116.10.000311
S856N856NaaCaaT11AY.120.000316
S856N856NaaCaaT11AY.120.20.001285
S856N856NaaCaaT11AY.140.000088
S856N856NaaCaaT11AY.160.00038
S856N856NaaCaaT11AY.23.10.000417
S856N856NaaCaaT11AY.4.30.000842
S856N856NaaCaaT11AY.590.00053
S856N856NaaCaaT11AY.680.000274
S856N856NaaCaaT11AY.7.20.000559
S856N856NaaCaaT11AY.800.001129
S856N856NaaCaaT11AY.870.000833
S856N856NaaCaaT11AY.890.004902
S856N856NaaCaaT11AY.900.000684
S856N856NaaCaaT11AZ.20.000821
S856N856NaaCaaT11AZ.60.008403
S856N856NaaCaaT11B.1.1.100.001115
S856N856NaaCaaT11B.1.1.120.007463
S856N856NaaCaaT11B.1.1.1330.008475
S856N856NaaCaaT11B.1.1.1530.001095
S856N856NaaCaaT11B.1.1.1640.005155
S856N856NaaCaaT11B.1.1.2090.008929
S856N856NaaCaaT11B.1.1.2200.001859
S856N856NaaCaaT11B.1.1.2770.000759
S856N856NaaCaaT11B.1.1.2800.003086
S856N856NaaCaaT11B.1.1.3260.001761
S856N856NaaCaaT11B.1.1.3290.003846
S856N856NaaCaaT11B.1.1.3480.000796
S856N856NaaCaaT11B.1.1.3690.000446
S856N856NaaCaaT11B.1.1.370.000193
S856N856NaaCaaT11B.1.1.3730.02381
S856N856NaaCaaT11B.1.1.3750.011905
S856N856NaaCaaT11B.1.1.3810.04
S856N856NaaCaaT11B.1.1.390.00051
S856N856NaaCaaT11B.1.1.4160.000905
S856N856NaaCaaT11B.1.1.4320.001266
S856N856NaaCaaT11B.1.1.4340.000349
S856N856NaaCaaT11B.1.1.4860.001577
S856N856NaaCaaT11B.1.1.4870.005587
S856N856NaaCaaT11B.1.1.500.000679
S856N856NaaCaaT11B.1.1.5070.008696
S856N856NaaCaaT11B.1.1.610.008772
S856N856NaaCaaT11B.1.1080.005814
S856N856NaaCaaT11B.1.110.30.000718
S856N856NaaCaaT11B.1.160.80.001289
S856N856NaaCaaT11B.1.177.120.000152
S856N856NaaCaaT11B.1.177.170.000821
S856N856NaaCaaT11B.1.177.180.00116
S856N856NaaCaaT11B.1.177.330.001645
S856N856NaaCaaT11B.1.177.40.000211
S856N856NaaCaaT11B.1.177.440.000519
S856N856NaaCaaT11B.1.177.530.002392
S856N856NaaCaaT11B.1.177.540.000606
S856N856NaaCaaT11B.1.177.580.001332
S856N856NaaCaaT11B.1.177.620.001192
S856N856NaaCaaT11B.1.177.730.000566
S856N856NaaCaaT11B.1.177.790.002342
S856N856NaaCaaT11B.1.177.80.000752
S856N856NaaCaaT11B.1.177.810.000189
S856N856NaaCaaT11B.1.177.870.000728
S856N856NaaCaaT11B.1.1890.004292
S856N856NaaCaaT11B.1.2050.02381
S856N856NaaCaaT11B.1.2060.000816
S856N856NaaCaaT11B.1.220.001318
S856N856NaaCaaT11B.1.2230.002778
S856N856NaaCaaT11B.1.258.100.011364
S856N856NaaCaaT11B.1.2650.001271
S856N856NaaCaaT11B.1.2980.002114
S856N856NaaCaaT11B.1.3020.013333
S856N856NaaCaaT11B.1.3240.001605
S856N856NaaCaaT11B.1.3290.000608
S856N856NaaCaaT11B.1.36.160.001425
S856N856NaaCaaT11B.1.36.260.002857
S856N856NaaCaaT11B.1.36.310.001751
S856N856NaaCaaT11B.1.36.80.001
S856N856NaaCaaT11B.1.3610.001289
S856N856NaaCaaT11B.1.3660.004878
S856N856NaaCaaT11B.1.3700.008
S856N856NaaCaaT11B.1.3980.002976
S856N856NaaCaaT11B.1.4000.000429
S856N856NaaCaaT11B.1.4170.028571
S856N856NaaCaaT11B.1.4220.000812
S856N856NaaCaaT11B.1.4730.019231
S856N856NaaCaaT11B.1.4970.000315
S856N856NaaCaaT11B.1.5010.007353
S856N856NaaCaaT11B.1.5210.004975
S856N856NaaCaaT11B.1.5440.006024
S856N856NaaCaaT11B.1.5650.00081
S856N856NaaCaaT11B.1.5680.001111
S856N856NaaCaaT11B.1.5760.000907
S856N856NaaCaaT11B.1.5870.001898
S856N856NaaCaaT11B.1.6200.000946
S856N856NaaCaaT11B.1.6280.000352
S856N856NaaCaaT11B.1.6320.006711
S856N856NaaCaaT11B.1.9.50.005682
S856N856NaaCaaT11B.1.930.000934
S856N856NaaCaaT11B.400.000364
S856N856NaaCaaT11B.550.00295
S856N856NaaCaaT11C.10.002392
S856N856NaaCaaT11C.160.00106
S856N856NaaCaaT11C.180.002591
S856N856NaaCaaT11C.260.007353
S856N856NaaCaaT11D.30.005917
S856N856NaaCaaT11P.1.160.000374
S856N856NaaCaaT11P.1.70.000319
S856N856NaaCaaT11P.30.001595
S856N856NaaCaaT11P.60.003145
S856N856NaaCaaT11P.70.004367
S856N856NaaCaaT11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.