CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 854 & Codon = aaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S854K854NnonsynaaGaaT461045870.99501124122-24124

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S854K854NaaGaaT45874610All0.000877
S854K854NaaGaaT19982002AY.40.00311
S854K854NaaGaaT10151015B.1.6230.544528
S854K854NaaGaaT208209AY.490.664537
S854K854NaaGaaT164165B.1.617.20.000618
S854K854NaaGaaT146148B.1.1.70.000131
S854K854NaaGaaT121121AY.1020.003208
S854K854NaaGaaT9294AY.430.000408
S854K854NaaGaaT6969C.160.073171
S854K854NaaGaaT6565AY.1030.000404
S854K854NaaGaaT4242B.1.1.3841
S854K854NaaGaaT4040B.1.1770.000527
S854K854NaaGaaT3535AY.390.000865
S854K854NaaGaaT3233AY.750.001793
S854K854NaaGaaT3232AY.440.000195
S854K854NaaGaaT2727B.1.20.000238
S854K854NaaGaaT2222B.10.000202
S854K854NaaGaaT1919P.10.000299
S854K854NaaGaaT1818P.1.20.020809
S854K854NaaGaaT1616B.1.1600.000499
S854K854NaaGaaT1515AY.50.00031
S854K854NaaGaaT1314AY.250.000078
S854K854NaaGaaT1414AY.90.000946
S854K854NaaGaaT1414AY.9.20.000514
S854K854NaaGaaT1313AY.30.000129
S854K854NaaGaaT1313AY.610.001362
S854K854NaaGaaT1313B.1.416.10.020313
S854K854NaaGaaT1212AY.1210.001624
S854K854NaaGaaT1212AY.330.000801
S854K854NaaGaaT1212B.1.10.000218
S854K854NaaGaaT1111B.1.3510.000327
S854K854NaaGaaT1010AY.290.000158
S854K854NaaGaaT1010AY.460.001041
S854K854NaaGaaT99AY.116.10.002803
S854K854NaaGaaT99B.1.177.830.013333
S854K854NaaGaaT88AY.200.000311
S854K854NaaGaaT18AY.650.000533
S854K854NaaGaaT78D.20.000525
S854K854NaaGaaT77AY.1130.000997
S854K854NaaGaaT77AY.1190.000247
S854K854NaaGaaT77AY.130.001127
S854K854NaaGaaT77AY.260.000198
S854K854NaaGaaT77AY.470.000218
S854K854NaaGaaT77AY.540.000667
S854K854NaaGaaT77B.1.3370.039106
S854K854NaaGaaT77B.1.4290.000165
S854K854NaaGaaT66B.1.1390.004399
S854K854NaaGaaT55AY.1000.00023
S854K854NaaGaaT55AY.420.000201
S854K854NaaGaaT55AY.60.000206
S854K854NaaGaaT55B.1.1.1740.016892
S854K854NaaGaaT55B.1.1.2140.000277
S854K854NaaGaaT55B.1.3670.003962
S854K854NaaGaaT44AY.46.60.000289
S854K854NaaGaaT44AY.5.30.00135
S854K854NaaGaaT44AY.98.10.000194
S854K854NaaGaaT44B.1.1.10.001307
S854K854NaaGaaT44B.1.5960.000349
S854K854NaaGaaT44C.370.000464
S854K854NaaGaaT44P.1.140.000191
S854K854NaaGaaT33AY.1110.000549
S854K854NaaGaaT33AY.1140.000693
S854K854NaaGaaT33AY.1200.000112
S854K854NaaGaaT33AY.450.000365
S854K854NaaGaaT33AY.980.000237
S854K854NaaGaaT33B.1.617.10.000387
S854K854NaaGaaT22AY.1170.000169
S854K854NaaGaaT22AY.220.004184
S854K854NaaGaaT22AY.230.000139
S854K854NaaGaaT22AY.23.10.000835
S854K854NaaGaaT22AY.34.10.00102
S854K854NaaGaaT22AY.4.20.000043
S854K854NaaGaaT22AY.46.20.001271
S854K854NaaGaaT22AY.46.40.000329
S854K854NaaGaaT22AY.99.20.000184
S854K854NaaGaaT22B.1.1.390.001019
S854K854NaaGaaT22B.1.177.810.000379
S854K854NaaGaaT22B.1.438.10.000215
S854K854NaaGaaT22B.1.5250.000226
S854K854NaaGaaT22B.1.5260.000047
S854K854NaaGaaT11A.10.000282
S854K854NaaGaaT11AU.10.001266
S854K854NaaGaaT11AY.100.00053
S854K854NaaGaaT11AY.1010.00049
S854K854NaaGaaT11AY.1150.005208
S854K854NaaGaaT11AY.1160.000287
S854K854NaaGaaT11AY.1180.000063
S854K854NaaGaaT11AY.140.000088
S854K854NaaGaaT11AY.150.002222
S854K854NaaGaaT11AY.190.00114
S854K854NaaGaaT11AY.3.10.000085
S854K854NaaGaaT11AY.350.000233
S854K854NaaGaaT11AY.370.000316
S854K854NaaGaaT11AY.4.40.000409
S854K854NaaGaaT11AY.4.50.000107
S854K854NaaGaaT11AY.5.40.000277
S854K854NaaGaaT11AY.600.000938
S854K854NaaGaaT11AY.70.000196
S854K854NaaGaaT11AY.7.10.000113
S854K854NaaGaaT11AY.7.20.000559
S854K854NaaGaaT11AY.75.10.00018
S854K854NaaGaaT11AY.770.001127
S854K854NaaGaaT11AY.820.001357
S854K854NaaGaaT11AY.840.000437
S854K854NaaGaaT11AY.850.000427
S854K854NaaGaaT11AY.920.000287
S854K854NaaGaaT11AY.940.000443
S854K854NaaGaaT11AY.990.001049
S854K854NaaGaaT11AY.99.10.001553
S854K854NaaGaaT11B.1.1.1340.011364
S854K854NaaGaaT11B.1.1.250.000569
S854K854NaaGaaT11B.1.1.30.008696
S854K854NaaGaaT11B.1.1.3110.000358
S854K854NaaGaaT11B.1.1.330.000421
S854K854NaaGaaT11B.1.1.3480.000796
S854K854NaaGaaT11B.1.1.3710.010417
S854K854NaaGaaT11B.1.1.3720.000689
S854K854NaaGaaT11B.1.1.3970.002252
S854K854NaaGaaT11B.1.1.4040.015873
S854K854NaaGaaT11B.1.1.4090.002833
S854K854NaaGaaT11B.1.1.4160.000905
S854K854NaaGaaT11B.1.1.5190.00004
S854K854NaaGaaT11B.1.1.630.000386
S854K854NaaGaaT11B.1.1.700.000341
S854K854NaaGaaT11B.1.177.170.000821
S854K854NaaGaaT11B.1.177.330.001645
S854K854NaaGaaT11B.1.177.350.000691
S854K854NaaGaaT11B.1.177.860.000183
S854K854NaaGaaT11B.1.177.870.000728
S854K854NaaGaaT11B.1.221.30.000833
S854K854NaaGaaT11B.1.2420.018868
S854K854NaaGaaT11B.1.2580.000067
S854K854NaaGaaT11B.1.3490.000715
S854K854NaaGaaT11B.1.351.20.000303
S854K854NaaGaaT11B.1.36.170.000494
S854K854NaaGaaT11B.1.4280.00102
S854K854NaaGaaT11B.1.5610.000397
S854K854NaaGaaT11B.1.5680.001111
S854K854NaaGaaT11B.1.5750.000303
S854K854NaaGaaT11B.1.6100.003546
S854K854NaaGaaT11B.1.6280.000352
S854K854NaaGaaT11D.30.005917
S854K854NaaGaaT11P.1.170.000162
S854K854NaaGaaT11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.