CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 854 | K854N | nonsyn | aaG | aaT | 4610 | 4587 | 0.995011 | 24122-24124 | |
S | 854 | K854N | nonsyn | aaG | aaC | 4610 | 23 | 0.00498915 | 24122-24124 | |
S | 854 | K854K | syn | aaG | aaA | 3952 | 3952 | 1 | 24122-24124 | |
S | 854 | K854R | nonsyn | aAg | aGg | 146 | 146 | 1 | 24122-24124 | |
S | 854 | K854del | del | AAG | --- | 116 | 116 | 1 | 24122-24124 | |
S | 854 | K854T | nonsyn | aAg | aCg | 37 | 37 | 1 | 24122-24124 | |
S | 854 | K854E | nonsyn | Aag | Gag | 24 | 24 | 1 | 24122-24124 | |
S | 854 | K854Q | nonsyn | Aag | Cag | 9 | 9 | 1 | 24122-24124 | |
S | 854 | K854M | nonsyn | aAg | aTg | 7 | 7 | 1 | 24122-24124 | |
S | 854 | K854del2 | del | aAG | a-- | 5 | 5 | 1 | 24122-24124 | |
S | 854 | K854X | nonsyn | Aag | Tag | 2 | 2 | 1 | 24122-24124 | |
S | 854 | K854S | nonsyn | aAG | aGT | 2 | 2 | 1 | 24122-24124 | |
S | 854 | K854H | nonsyn | AaG | CaT | 2 | 2 | 1 | 24122-24124 | |
S | 854 | K854del1 | del | Aag | -ag | 1 | 1 | 1 | 24122-24124 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 854 | K854N | aaG | aaT | 4587 | 4610 | All | 0.000877 |
S | 854 | K854N | aaG | aaC | 23 | 4610 | All | 0.000004 |
S | 854 | K854K | aaG | aaA | 3952 | 3952 | All | 0.000756 |
S | 854 | K854N | aaG | aaT | 1998 | 2002 | AY.4 | 0.00311 |
S | 854 | K854N | aaG | aaC | 4 | 2002 | AY.4 | 0.000006 |
S | 854 | K854K | aaG | aaA | 1341 | 1341 | AY.32 | 0.714058 |
S | 854 | K854K | aaG | aaA | 1035 | 1035 | AY.95 | 0.787671 |
S | 854 | K854N | aaG | aaT | 1015 | 1015 | B.1.623 | 0.544528 |
S | 854 | K854K | aaG | aaA | 515 | 515 | AY.121 | 0.069689 |
S | 854 | K854K | aaG | aaA | 376 | 376 | B.1.1.7 | 0.000337 |
S | 854 | K854K | aaG | aaA | 324 | 324 | B.1.617.2 | 0.00122 |
S | 854 | K854N | aaG | aaT | 208 | 209 | AY.49 | 0.664537 |
S | 854 | K854N | aaG | aaC | 1 | 209 | AY.49 | 0.003195 |
S | 854 | K854N | aaG | aaT | 164 | 165 | B.1.617.2 | 0.000618 |
S | 854 | K854N | aaG | aaC | 1 | 165 | B.1.617.2 | 0.000004 |
S | 854 | K854N | aaG | aaT | 146 | 148 | B.1.1.7 | 0.000131 |
S | 854 | K854N | aaG | aaC | 2 | 148 | B.1.1.7 | 0.000002 |
S | 854 | K854R | aAg | aGg | 146 | 146 | All | 0.000028 |
S | 854 | K854N | aaG | aaT | 121 | 121 | AY.102 | 0.003208 |
S | 854 | K854del | AAG | --- | 116 | 116 | All | 0.000022 |
S | 854 | K854N | aaG | aaT | 92 | 94 | AY.43 | 0.000408 |
S | 854 | K854N | aaG | aaC | 2 | 94 | AY.43 | 0.000009 |
S | 854 | K854N | aaG | aaT | 69 | 69 | C.16 | 0.073171 |
S | 854 | K854N | aaG | aaT | 65 | 65 | AY.103 | 0.000404 |
S | 854 | K854del | AAG | --- | 43 | 43 | B.1.1.7 | 0.000038 |
S | 854 | K854N | aaG | aaT | 42 | 42 | B.1.1.384 | 1 |
S | 854 | K854N | aaG | aaT | 40 | 40 | B.1.177 | 0.000527 |
S | 854 | K854K | aaG | aaA | 38 | 38 | B.1.258 | 0.002529 |
S | 854 | K854T | aAg | aCg | 37 | 37 | All | 0.000007 |
S | 854 | K854N | aaG | aaT | 35 | 35 | AY.39 | 0.000865 |
S | 854 | K854K | aaG | aaA | 34 | 34 | AY.42 | 0.001368 |
S | 854 | K854N | aaG | aaT | 32 | 33 | AY.75 | 0.001793 |
S | 854 | K854N | aaG | aaC | 1 | 33 | AY.75 | 0.000056 |
S | 854 | K854N | aaG | aaT | 32 | 32 | AY.44 | 0.000195 |
S | 854 | K854K | aaG | aaA | 28 | 28 | B.1.177.81 | 0.005301 |
S | 854 | K854N | aaG | aaT | 27 | 27 | B.1.2 | 0.000238 |
S | 854 | K854K | aaG | aaA | 25 | 25 | B.1.2 | 0.00022 |
S | 854 | K854E | Aag | Gag | 24 | 24 | All | 0.000005 |
S | 854 | K854N | aaG | aaT | 22 | 22 | B.1 | 0.000202 |
S | 854 | K854N | aaG | aaT | 19 | 19 | P.1 | 0.000299 |
S | 854 | K854N | aaG | aaT | 18 | 18 | P.1.2 | 0.020809 |
S | 854 | K854R | aAg | aGg | 17 | 17 | AY.38 | 0.008487 |
S | 854 | K854N | aaG | aaT | 16 | 16 | B.1.160 | 0.000499 |
S | 854 | K854K | aaG | aaA | 15 | 15 | AY.103 | 0.000093 |
S | 854 | K854K | aaG | aaA | 15 | 15 | AY.4 | 0.000023 |
S | 854 | K854N | aaG | aaT | 15 | 15 | AY.5 | 0.00031 |
S | 854 | K854K | aaG | aaA | 14 | 14 | AY.23 | 0.000976 |
S | 854 | K854N | aaG | aaT | 13 | 14 | AY.25 | 0.000078 |
S | 854 | K854N | aaG | aaC | 1 | 14 | AY.25 | 0.000006 |
S | 854 | K854N | aaG | aaT | 14 | 14 | AY.9 | 0.000946 |
S | 854 | K854N | aaG | aaT | 14 | 14 | AY.9.2 | 0.000514 |
S | 854 | K854K | aaG | aaA | 14 | 14 | B.1.526 | 0.000329 |
S | 854 | K854R | aAg | aGg | 13 | 13 | AY.14 | 0.001144 |
S | 854 | K854N | aaG | aaT | 13 | 13 | AY.3 | 0.000129 |
S | 854 | K854R | aAg | aGg | 13 | 13 | AY.4.2 | 0.000282 |
S | 854 | K854R | aAg | aGg | 13 | 13 | AY.45 | 0.001582 |
S | 854 | K854R | aAg | aGg | 13 | 13 | AY.6 | 0.000535 |
S | 854 | K854N | aaG | aaT | 13 | 13 | AY.61 | 0.001362 |
S | 854 | K854R | aAg | aGg | 13 | 13 | B.1.1.7 | 0.000012 |
S | 854 | K854N | aaG | aaT | 13 | 13 | B.1.416.1 | 0.020313 |
S | 854 | K854R | aAg | aGg | 13 | 13 | B.1.617.2 | 0.000049 |
S | 854 | K854N | aaG | aaT | 12 | 12 | AY.121 | 0.001624 |
S | 854 | K854N | aaG | aaT | 12 | 12 | AY.33 | 0.000801 |
S | 854 | K854K | aaG | aaA | 12 | 12 | AY.43 | 0.000053 |
S | 854 | K854N | aaG | aaT | 12 | 12 | B.1.1 | 0.000218 |
S | 854 | K854K | aaG | aaA | 11 | 11 | AY.39 | 0.000272 |
S | 854 | K854K | aaG | aaA | 11 | 11 | AY.5 | 0.000227 |
S | 854 | K854K | aaG | aaA | 11 | 11 | B.1 | 0.000101 |
S | 854 | K854N | aaG | aaT | 11 | 11 | B.1.351 | 0.000327 |
S | 854 | K854N | aaG | aaT | 10 | 10 | AY.29 | 0.000158 |
S | 854 | K854E | Aag | Gag | 10 | 10 | AY.4 | 0.000016 |
S | 854 | K854N | aaG | aaT | 10 | 10 | AY.46 | 0.001041 |
S | 854 | K854Q | Aag | Cag | 9 | 9 | All | 0.000002 |
S | 854 | K854N | aaG | aaT | 9 | 9 | AY.116.1 | 0.002803 |
S | 854 | K854N | aaG | aaT | 9 | 9 | B.1.177.83 | 0.013333 |
S | 854 | K854N | aaG | aaT | 8 | 8 | AY.20 | 0.000311 |
S | 854 | K854T | aAg | aCg | 8 | 8 | AY.44 | 0.000049 |
S | 854 | K854N | aaG | aaC | 7 | 8 | AY.65 | 0.003731 |
S | 854 | K854N | aaG | aaT | 1 | 8 | AY.65 | 0.000533 |
S | 854 | K854N | aaG | aaT | 7 | 8 | D.2 | 0.000525 |
S | 854 | K854N | aaG | aaC | 1 | 8 | D.2 | 0.000075 |
S | 854 | K854M | aAg | aTg | 7 | 7 | All | 0.000001 |
S | 854 | K854N | aaG | aaT | 7 | 7 | AY.113 | 0.000997 |
S | 854 | K854N | aaG | aaT | 7 | 7 | AY.119 | 0.000247 |
S | 854 | K854N | aaG | aaT | 7 | 7 | AY.13 | 0.001127 |
S | 854 | K854N | aaG | aaT | 7 | 7 | AY.26 | 0.000198 |
S | 854 | K854K | aaG | aaA | 7 | 7 | AY.41 | 0.002058 |
S | 854 | K854N | aaG | aaT | 7 | 7 | AY.47 | 0.000218 |
S | 854 | K854N | aaG | aaT | 7 | 7 | AY.54 | 0.000667 |
S | 854 | K854del | AAG | --- | 7 | 7 | B.1.177 | 0.000092 |
S | 854 | K854N | aaG | aaT | 7 | 7 | B.1.337 | 0.039106 |
S | 854 | K854N | aaG | aaT | 7 | 7 | B.1.429 | 0.000165 |
S | 854 | K854T | aAg | aCg | 7 | 7 | C.35 | 0.005418 |
S | 854 | K854K | aaG | aaA | 7 | 7 | P.1.4 | 0.006836 |
S | 854 | K854K | aaG | aaA | 6 | 6 | AY.3 | 0.00006 |
S | 854 | K854K | aaG | aaA | 6 | 6 | AY.33 | 0.000401 |
S | 854 | K854del | AAG | --- | 6 | 6 | AY.4 | 0.000009 |
S | 854 | K854R | aAg | aGg | 6 | 6 | B.1 | 0.000055 |
S | 854 | K854N | aaG | aaT | 6 | 6 | B.1.139 | 0.004399 |
S | 854 | K854K | aaG | aaA | 6 | 6 | B.1.241 | 0.00487 |
S | 854 | K854del2 | aAG | a-- | 5 | 5 | All | 0.000001 |
S | 854 | K854N | aaG | aaT | 5 | 5 | AY.100 | 0.00023 |
S | 854 | K854K | aaG | aaA | 5 | 5 | AY.110 | 0.000563 |
S | 854 | K854N | aaG | aaT | 5 | 5 | AY.42 | 0.000201 |
S | 854 | K854N | aaG | aaT | 5 | 5 | AY.6 | 0.000206 |
S | 854 | K854N | aaG | aaT | 5 | 5 | B.1.1.174 | 0.016892 |
S | 854 | K854N | aaG | aaT | 5 | 5 | B.1.1.214 | 0.000277 |
S | 854 | K854N | aaG | aaT | 5 | 5 | B.1.367 | 0.003962 |
S | 854 | K854K | aaG | aaA | 4 | 4 | AY.111 | 0.000733 |
S | 854 | K854R | aAg | aGg | 4 | 4 | AY.25 | 0.000024 |
S | 854 | K854del | AAG | --- | 4 | 4 | AY.4.5 | 0.00043 |
S | 854 | K854del | AAG | --- | 4 | 4 | AY.43 | 0.000018 |
S | 854 | K854K | aaG | aaA | 4 | 4 | AY.46.2 | 0.002541 |
S | 854 | K854N | aaG | aaT | 4 | 4 | AY.46.6 | 0.000289 |
S | 854 | K854N | aaG | aaT | 4 | 4 | AY.5.3 | 0.00135 |
S | 854 | K854K | aaG | aaA | 4 | 4 | AY.75 | 0.000224 |
S | 854 | K854K | aaG | aaA | 4 | 4 | AY.84 | 0.00175 |
S | 854 | K854R | aAg | aGg | 4 | 4 | AY.91 | 0.002922 |
S | 854 | K854N | aaG | aaT | 4 | 4 | AY.98.1 | 0.000194 |
S | 854 | K854R | aAg | aGg | 4 | 4 | AY.99 | 0.004197 |
S | 854 | K854N | aaG | aaT | 4 | 4 | B.1.1.1 | 0.001307 |
S | 854 | K854K | aaG | aaA | 4 | 4 | B.1.36.36 | 0.002408 |
S | 854 | K854N | aaG | aaT | 4 | 4 | B.1.596 | 0.000349 |
S | 854 | K854N | aaG | aaT | 4 | 4 | C.37 | 0.000464 |
S | 854 | K854N | aaG | aaT | 4 | 4 | P.1.14 | 0.000191 |
S | 854 | K854R | aAg | aGg | 3 | 3 | AY.103 | 0.000019 |
S | 854 | K854N | aaG | aaT | 3 | 3 | AY.111 | 0.000549 |
S | 854 | K854N | aaG | aaT | 3 | 3 | AY.114 | 0.000693 |
S | 854 | K854E | Aag | Gag | 3 | 3 | AY.117 | 0.000254 |
S | 854 | K854N | aaG | aaT | 3 | 3 | AY.120 | 0.000112 |
S | 854 | K854del | AAG | --- | 3 | 3 | AY.25 | 0.000018 |
S | 854 | K854N | aaG | aaT | 3 | 3 | AY.45 | 0.000365 |
S | 854 | K854K | aaG | aaA | 3 | 3 | AY.72 | 0.004082 |
S | 854 | K854K | aaG | aaA | 3 | 3 | AY.78 | 0.004622 |
S | 854 | K854K | aaG | aaA | 3 | 3 | AY.92 | 0.000862 |
S | 854 | K854N | aaG | aaT | 3 | 3 | AY.98 | 0.000237 |
S | 854 | K854E | Aag | Gag | 3 | 3 | B.1 | 0.000027 |
S | 854 | K854T | aAg | aCg | 3 | 3 | B.1.177 | 0.00004 |
S | 854 | K854K | aaG | aaA | 3 | 3 | B.1.177.7 | 0.000495 |
S | 854 | K854N | aaG | aaT | 3 | 3 | B.1.617.1 | 0.000387 |
S | 854 | K854T | aAg | aCg | 3 | 3 | B.1.617.2 | 0.000011 |
S | 854 | K854R | aAg | aGg | 3 | 3 | D.2 | 0.000225 |
S | 854 | K854del | AAG | --- | 2 | 2 | 0.111111 | |
S | 854 | K854K | aaG | aaA | 2 | 2 | A.1 | 0.000564 |
S | 854 | K854X | Aag | Tag | 2 | 2 | All | 0 |
S | 854 | K854S | aAG | aGT | 2 | 2 | All | 0 |
S | 854 | K854H | AaG | CaT | 2 | 2 | All | 0 |
S | 854 | K854K | aaG | aaA | 2 | 2 | AY.102 | 0.000053 |
S | 854 | K854K | aaG | aaA | 2 | 2 | AY.108 | 0.002205 |
S | 854 | K854K | aaG | aaA | 2 | 2 | AY.114 | 0.000462 |
S | 854 | K854K | aaG | aaA | 2 | 2 | AY.117 | 0.000169 |
S | 854 | K854N | aaG | aaT | 2 | 2 | AY.117 | 0.000169 |
S | 854 | K854K | aaG | aaA | 2 | 2 | AY.118 | 0.000125 |
S | 854 | K854N | aaG | aaT | 2 | 2 | AY.22 | 0.004184 |
S | 854 | K854N | aaG | aaT | 2 | 2 | AY.23 | 0.000139 |
S | 854 | K854N | aaG | aaT | 2 | 2 | AY.23.1 | 0.000835 |
S | 854 | K854N | aaG | aaT | 2 | 2 | AY.34.1 | 0.00102 |
S | 854 | K854K | aaG | aaA | 2 | 2 | AY.35 | 0.000466 |
S | 854 | K854N | aaG | aaT | 2 | 2 | AY.4.2 | 0.000043 |
S | 854 | K854K | aaG | aaA | 2 | 2 | AY.4.5 | 0.000215 |
S | 854 | K854T | aAg | aCg | 2 | 2 | AY.43 | 0.000009 |
S | 854 | K854E | Aag | Gag | 2 | 2 | AY.44 | 0.000012 |
S | 854 | K854K | aaG | aaA | 2 | 2 | AY.44 | 0.000012 |
S | 854 | K854K | aaG | aaA | 2 | 2 | AY.45 | 0.000243 |
S | 854 | K854del | AAG | --- | 2 | 2 | AY.46.2 | 0.001271 |
S | 854 | K854N | aaG | aaT | 2 | 2 | AY.46.2 | 0.001271 |
S | 854 | K854N | aaG | aaT | 2 | 2 | AY.46.4 | 0.000329 |
S | 854 | K854Q | Aag | Cag | 2 | 2 | AY.63 | 0.000774 |
S | 854 | K854K | aaG | aaA | 2 | 2 | AY.68 | 0.000547 |
S | 854 | K854K | aaG | aaA | 2 | 2 | AY.98 | 0.000158 |
S | 854 | K854K | aaG | aaA | 2 | 2 | AY.98.1 | 0.000097 |
S | 854 | K854N | aaG | aaT | 2 | 2 | AY.99.2 | 0.000184 |
S | 854 | K854Q | Aag | Cag | 2 | 2 | B.1 | 0.000018 |
S | 854 | K854del | AAG | --- | 2 | 2 | B.1 | 0.000018 |
S | 854 | K854del | AAG | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 854 | K854K | aaG | aaA | 2 | 2 | B.1.1 | 0.000036 |
S | 854 | K854M | aAg | aTg | 2 | 2 | B.1.1.107 | 0.064516 |
S | 854 | K854N | aaG | aaT | 2 | 2 | B.1.1.39 | 0.001019 |
S | 854 | K854T | aAg | aCg | 2 | 2 | B.1.1.7 | 0.000002 |
S | 854 | K854R | aAg | aGg | 2 | 2 | B.1.160 | 0.000062 |
S | 854 | K854K | aaG | aaA | 2 | 2 | B.1.177.12 | 0.000303 |
S | 854 | K854del | AAG | --- | 2 | 2 | B.1.177.4 | 0.000422 |
S | 854 | K854del | AAG | --- | 2 | 2 | B.1.177.54 | 0.001213 |
S | 854 | K854N | aaG | aaT | 2 | 2 | B.1.177.81 | 0.000379 |
S | 854 | K854del | AAG | --- | 2 | 2 | B.1.2 | 0.000018 |
S | 854 | K854K | aaG | aaA | 2 | 2 | B.1.221 | 0.000142 |
S | 854 | K854N | aaG | aaT | 2 | 2 | B.1.438.1 | 0.000215 |
S | 854 | K854N | aaG | aaC | 2 | 2 | B.1.466.2 | 0.000782 |
S | 854 | K854N | aaG | aaT | 2 | 2 | B.1.525 | 0.000226 |
S | 854 | K854N | aaG | aaT | 2 | 2 | B.1.526 | 0.000047 |
S | 854 | K854del | AAG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 854 | K854del2 | aAG | a-- | 2 | 2 | B.1.617.2 | 0.000008 |
S | 854 | K854del | AAG | --- | 1 | 1 | A | 0.000387 |
S | 854 | K854N | aaG | aaT | 1 | 1 | A.1 | 0.000282 |
S | 854 | K854R | aAg | aGg | 1 | 1 | A.2 | 0.000662 |
S | 854 | K854R | aAg | aGg | 1 | 1 | A.21 | 0.00277 |
S | 854 | K854N | aaG | aaC | 1 | 1 | A.28 | 0.002646 |
S | 854 | K854del | AAG | --- | 1 | 1 | AH.3 | 0.003802 |
S | 854 | K854del1 | Aag | -ag | 1 | 1 | All | 0 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AU.1 | 0.001266 |
S | 854 | K854R | aAg | aGg | 1 | 1 | AU.3 | 0.00211 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.10 | 0.00053 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.101 | 0.00049 |
S | 854 | K854M | aAg | aTg | 1 | 1 | AY.103 | 0.000006 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.106 | 0.000335 |
S | 854 | K854R | aAg | aGg | 1 | 1 | AY.107 | 0.000466 |
S | 854 | K854T | aAg | aCg | 1 | 1 | AY.111 | 0.000183 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.113 | 0.000142 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.115 | 0.005208 |
S | 854 | K854R | aAg | aGg | 1 | 1 | AY.116 | 0.000287 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.116 | 0.000287 |
S | 854 | K854del | AAG | --- | 1 | 1 | AY.117 | 0.000085 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.118 | 0.000063 |
S | 854 | K854R | aAg | aGg | 1 | 1 | AY.119 | 0.000035 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.119 | 0.000035 |
S | 854 | K854R | aAg | aGg | 1 | 1 | AY.12 | 0.000316 |
S | 854 | K854del | AAG | --- | 1 | 1 | AY.120 | 0.000037 |
S | 854 | K854R | aAg | aGg | 1 | 1 | AY.120.2 | 0.001285 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.14 | 0.000088 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.15 | 0.002222 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.19 | 0.00114 |
S | 854 | K854del2 | aAG | a-- | 1 | 1 | AY.25 | 0.000006 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.25 | 0.000006 |
S | 854 | K854R | aAg | aGg | 1 | 1 | AY.26 | 0.000028 |
S | 854 | K854T | aAg | aCg | 1 | 1 | AY.26 | 0.000028 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.29 | 0.000016 |
S | 854 | K854H | AaG | CaT | 1 | 1 | AY.29 | 0.000016 |
S | 854 | K854del | AAG | --- | 1 | 1 | AY.3.1 | 0.000085 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.3.1 | 0.000085 |
S | 854 | K854M | aAg | aTg | 1 | 1 | AY.33 | 0.000067 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.34 | 0.000097 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.35 | 0.000233 |
S | 854 | K854E | Aag | Gag | 1 | 1 | AY.35 | 0.000233 |
S | 854 | K854del | AAG | --- | 1 | 1 | AY.36 | 0.000148 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.37 | 0.000316 |
S | 854 | K854E | Aag | Gag | 1 | 1 | AY.39 | 0.000025 |
S | 854 | K854T | aAg | aCg | 1 | 1 | AY.4 | 0.000002 |
S | 854 | K854R | aAg | aGg | 1 | 1 | AY.4 | 0.000002 |
S | 854 | K854Q | Aag | Cag | 1 | 1 | AY.4 | 0.000002 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.4.4 | 0.000409 |
S | 854 | K854del1 | Aag | -ag | 1 | 1 | AY.4.5 | 0.000107 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.4.5 | 0.000107 |
S | 854 | K854del2 | aAG | a-- | 1 | 1 | AY.43 | 0.000004 |
S | 854 | K854R | aAg | aGg | 1 | 1 | AY.43 | 0.000004 |
S | 854 | K854M | aAg | aTg | 1 | 1 | AY.43 | 0.000004 |
S | 854 | K854E | Aag | Gag | 1 | 1 | AY.43 | 0.000004 |
S | 854 | K854del | AAG | --- | 1 | 1 | AY.44 | 0.000006 |
S | 854 | K854S | aAG | aGT | 1 | 1 | AY.44 | 0.000006 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.46 | 0.000104 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.46.1 | 0.001027 |
S | 854 | K854R | aAg | aGg | 1 | 1 | AY.46.6 | 0.000072 |
S | 854 | K854T | aAg | aCg | 1 | 1 | AY.5 | 0.000021 |
S | 854 | K854del | AAG | --- | 1 | 1 | AY.5 | 0.000021 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.5.4 | 0.000277 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.55 | 0.000917 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.59 | 0.00053 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.6 | 0.000041 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.60 | 0.000938 |
S | 854 | K854T | aAg | aCg | 1 | 1 | AY.64 | 0.000595 |
S | 854 | K854del | AAG | --- | 1 | 1 | AY.65 | 0.000533 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.7 | 0.000196 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.7.1 | 0.000113 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.7.2 | 0.000559 |
S | 854 | K854del | AAG | --- | 1 | 1 | AY.75 | 0.000056 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.75.1 | 0.00018 |
S | 854 | K854R | aAg | aGg | 1 | 1 | AY.75.1 | 0.00018 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.77 | 0.001127 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.77 | 0.001127 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.82 | 0.001357 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.82 | 0.001357 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.84 | 0.000437 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.85 | 0.000427 |
S | 854 | K854R | aAg | aGg | 1 | 1 | AY.9.2 | 0.000037 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.91 | 0.00073 |
S | 854 | K854T | aAg | aCg | 1 | 1 | AY.91.1 | 0.004065 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.92 | 0.000287 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.93 | 0.000273 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.94 | 0.000443 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.96 | 0.002075 |
S | 854 | K854del | AAG | --- | 1 | 1 | AY.98.1 | 0.000048 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.99 | 0.001049 |
S | 854 | K854K | aaG | aaA | 1 | 1 | AY.99 | 0.001049 |
S | 854 | K854del | AAG | --- | 1 | 1 | AY.99.1 | 0.001553 |
S | 854 | K854N | aaG | aaT | 1 | 1 | AY.99.1 | 0.001553 |
S | 854 | K854T | aAg | aCg | 1 | 1 | AZ.1 | 0.000867 |
S | 854 | K854R | aAg | aGg | 1 | 1 | B | 0.000128 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B | 0.000128 |
S | 854 | K854R | aAg | aGg | 1 | 1 | B.1.1 | 0.000018 |
S | 854 | K854Q | Aag | Cag | 1 | 1 | B.1.1 | 0.000018 |
S | 854 | K854E | Aag | Gag | 1 | 1 | B.1.1 | 0.000018 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.134 | 0.011364 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 854 | K854X | Aag | Tag | 1 | 1 | B.1.1.194 | 0.00495 |
S | 854 | K854S | aAG | aGT | 1 | 1 | B.1.1.216 | 0.00089 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.1.218 | 0.007692 |
S | 854 | K854R | aAg | aGg | 1 | 1 | B.1.1.230 | 0.009174 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.1.236 | 0.006897 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.25 | 0.000569 |
S | 854 | K854R | aAg | aGg | 1 | 1 | B.1.1.294 | 0.001266 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.3 | 0.008696 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.311 | 0.000358 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.1.312 | 0.001912 |
S | 854 | K854T | aAg | aCg | 1 | 1 | B.1.1.317 | 0.000412 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.33 | 0.000421 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.348 | 0.000796 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.371 | 0.010417 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.372 | 0.000689 |
S | 854 | K854T | aAg | aCg | 1 | 1 | B.1.1.388 | 0.045455 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B.1.1.39 | 0.00051 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.397 | 0.002252 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.404 | 0.015873 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.409 | 0.002833 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.416 | 0.000905 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B.1.1.416 | 0.000905 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B.1.1.519 | 0.00004 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.519 | 0.00004 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.63 | 0.000386 |
S | 854 | K854del2 | aAG | a-- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 854 | K854E | Aag | Gag | 1 | 1 | B.1.1.7 | 0.000001 |
S | 854 | K854H | AaG | CaT | 1 | 1 | B.1.1.7 | 0.000001 |
S | 854 | K854M | aAg | aTg | 1 | 1 | B.1.1.7 | 0.000001 |
S | 854 | K854Q | Aag | Cag | 1 | 1 | B.1.1.7 | 0.000001 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.1.70 | 0.000341 |
S | 854 | K854X | Aag | Tag | 1 | 1 | B.1.112 | 0.005181 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B.1.160.30 | 0.002976 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B.1.164 | 0.014925 |
S | 854 | K854Q | Aag | Cag | 1 | 1 | B.1.177 | 0.000013 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.177.17 | 0.000821 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.177.33 | 0.001645 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.177.35 | 0.000691 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B.1.177.4 | 0.000211 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.177.56 | 0.000668 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.177.58 | 0.001332 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.177.60 | 0.000218 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.177.63 | 0.002703 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B.1.177.83 | 0.001481 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.177.86 | 0.000183 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.177.87 | 0.000728 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.177.87 | 0.000728 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.179 | 0.003759 |
S | 854 | K854T | aAg | aCg | 1 | 1 | B.1.2 | 0.000009 |
S | 854 | K854Q | Aag | Cag | 1 | 1 | B.1.2 | 0.000009 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.221.3 | 0.000833 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.242 | 0.018868 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.258 | 0.000067 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.349 | 0.000715 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.351.2 | 0.000303 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.36.17 | 0.000494 |
S | 854 | K854del | AAG | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B.1.36.18 | 0.00042 |
S | 854 | K854R | aAg | aGg | 1 | 1 | B.1.36.36 | 0.000602 |
S | 854 | K854R | aAg | aGg | 1 | 1 | B.1.396 | 0.000706 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B.1.427 | 0.00005 |
S | 854 | K854R | aAg | aGg | 1 | 1 | B.1.427 | 0.00005 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.428 | 0.00102 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B.1.429 | 0.000024 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B.1.466.2 | 0.000391 |
S | 854 | K854R | aAg | aGg | 1 | 1 | B.1.525 | 0.000113 |
S | 854 | K854T | aAg | aCg | 1 | 1 | B.1.527 | 0.003704 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.561 | 0.000397 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.568 | 0.001111 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.575 | 0.000303 |
S | 854 | K854R | aAg | aGg | 1 | 1 | B.1.577 | 0.000687 |
S | 854 | K854R | aAg | aGg | 1 | 1 | B.1.595 | 0.000261 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.610 | 0.003546 |
S | 854 | K854K | aaG | aaA | 1 | 1 | B.1.621.1 | 0.000506 |
S | 854 | K854N | aaG | aaT | 1 | 1 | B.1.628 | 0.000352 |
S | 854 | K854R | aAg | aGg | 1 | 1 | B.4.5 | 0.011905 |
S | 854 | K854M | aAg | aTg | 1 | 1 | D.2 | 0.000075 |
S | 854 | K854E | Aag | Gag | 1 | 1 | D.2 | 0.000075 |
S | 854 | K854N | aaG | aaT | 1 | 1 | D.3 | 0.005917 |
S | 854 | K854K | aaG | aaA | 1 | 1 | N.5 | 0.001767 |
S | 854 | K854K | aaG | aaA | 1 | 1 | P.1 | 0.000016 |
S | 854 | K854del | AAG | --- | 1 | 1 | P.1.1 | 0.000318 |
S | 854 | K854del | AAG | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 854 | K854del | AAG | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 854 | K854N | aaG | aaT | 1 | 1 | P.1.17 | 0.000162 |
S | 854 | K854N | aaG | aaT | 1 | 1 | P.2 | 0.000187 |
S | 854 | K854del | AAG | --- | 1 | 1 | Q.2 | 0.000613 |
S | 854 | K854T | aAg | aCg | 1 | 1 | Q.4 | 0.000455 |
S | 854 | K854del | AAG | --- | 1 | 1 | U.3 | 0.003861 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|