CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 854

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	854	K854N		nonsyn	aaG	aaT	4610	4587	0.995011	24122-24124
S	854	K854N		nonsyn	aaG	aaC	4610	23	0.00498915	24122-24124
S	854	K854K		syn	aaG	aaA	3952	3952	1	24122-24124
S	854	K854R		nonsyn	aAg	aGg	146	146	1	24122-24124
S	854	K854del		del	AAG	---	116	116	1	24122-24124
S	854	K854T		nonsyn	aAg	aCg	37	37	1	24122-24124
S	854	K854E		nonsyn	Aag	Gag	24	24	1	24122-24124
S	854	K854Q		nonsyn	Aag	Cag	9	9	1	24122-24124
S	854	K854M		nonsyn	aAg	aTg	7	7	1	24122-24124
S	854	K854del2		del	aAG	a--	5	5	1	24122-24124
S	854	K854X		nonsyn	Aag	Tag	2	2	1	24122-24124
S	854	K854S		nonsyn	aAG	aGT	2	2	1	24122-24124
S	854	K854H		nonsyn	AaG	CaT	2	2	1	24122-24124
S	854	K854del1		del	Aag	-ag	1	1	1	24122-24124

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	854	K854N	aaG	aaT	4587	4610	All	0.000877
S	854	K854N	aaG	aaC	23	4610	All	0.000004
S	854	K854K	aaG	aaA	3952	3952	All	0.000756
S	854	K854N	aaG	aaT	1998	2002	AY.4	0.00311
S	854	K854N	aaG	aaC	4	2002	AY.4	0.000006
S	854	K854K	aaG	aaA	1341	1341	AY.32	0.714058
S	854	K854K	aaG	aaA	1035	1035	AY.95	0.787671
S	854	K854N	aaG	aaT	1015	1015	B.1.623	0.544528
S	854	K854K	aaG	aaA	515	515	AY.121	0.069689
S	854	K854K	aaG	aaA	376	376	B.1.1.7	0.000337
S	854	K854K	aaG	aaA	324	324	B.1.617.2	0.00122
S	854	K854N	aaG	aaT	208	209	AY.49	0.664537
S	854	K854N	aaG	aaC	1	209	AY.49	0.003195
S	854	K854N	aaG	aaT	164	165	B.1.617.2	0.000618
S	854	K854N	aaG	aaC	1	165	B.1.617.2	0.000004
S	854	K854N	aaG	aaT	146	148	B.1.1.7	0.000131
S	854	K854N	aaG	aaC	2	148	B.1.1.7	0.000002
S	854	K854R	aAg	aGg	146	146	All	0.000028
S	854	K854N	aaG	aaT	121	121	AY.102	0.003208
S	854	K854del	AAG	---	116	116	All	0.000022
S	854	K854N	aaG	aaT	92	94	AY.43	0.000408
S	854	K854N	aaG	aaC	2	94	AY.43	0.000009
S	854	K854N	aaG	aaT	69	69	C.16	0.073171
S	854	K854N	aaG	aaT	65	65	AY.103	0.000404
S	854	K854del	AAG	---	43	43	B.1.1.7	0.000038
S	854	K854N	aaG	aaT	42	42	B.1.1.384	1
S	854	K854N	aaG	aaT	40	40	B.1.177	0.000527
S	854	K854K	aaG	aaA	38	38	B.1.258	0.002529
S	854	K854T	aAg	aCg	37	37	All	0.000007
S	854	K854N	aaG	aaT	35	35	AY.39	0.000865
S	854	K854K	aaG	aaA	34	34	AY.42	0.001368
S	854	K854N	aaG	aaT	32	33	AY.75	0.001793
S	854	K854N	aaG	aaC	1	33	AY.75	0.000056
S	854	K854N	aaG	aaT	32	32	AY.44	0.000195
S	854	K854K	aaG	aaA	28	28	B.1.177.81	0.005301
S	854	K854N	aaG	aaT	27	27	B.1.2	0.000238
S	854	K854K	aaG	aaA	25	25	B.1.2	0.00022
S	854	K854E	Aag	Gag	24	24	All	0.000005
S	854	K854N	aaG	aaT	22	22	B.1	0.000202
S	854	K854N	aaG	aaT	19	19	P.1	0.000299
S	854	K854N	aaG	aaT	18	18	P.1.2	0.020809
S	854	K854R	aAg	aGg	17	17	AY.38	0.008487
S	854	K854N	aaG	aaT	16	16	B.1.160	0.000499
S	854	K854K	aaG	aaA	15	15	AY.103	0.000093
S	854	K854K	aaG	aaA	15	15	AY.4	0.000023
S	854	K854N	aaG	aaT	15	15	AY.5	0.00031
S	854	K854K	aaG	aaA	14	14	AY.23	0.000976
S	854	K854N	aaG	aaT	13	14	AY.25	0.000078
S	854	K854N	aaG	aaC	1	14	AY.25	0.000006
S	854	K854N	aaG	aaT	14	14	AY.9	0.000946
S	854	K854N	aaG	aaT	14	14	AY.9.2	0.000514
S	854	K854K	aaG	aaA	14	14	B.1.526	0.000329
S	854	K854R	aAg	aGg	13	13	AY.14	0.001144
S	854	K854N	aaG	aaT	13	13	AY.3	0.000129
S	854	K854R	aAg	aGg	13	13	AY.4.2	0.000282
S	854	K854R	aAg	aGg	13	13	AY.45	0.001582
S	854	K854R	aAg	aGg	13	13	AY.6	0.000535
S	854	K854N	aaG	aaT	13	13	AY.61	0.001362
S	854	K854R	aAg	aGg	13	13	B.1.1.7	0.000012
S	854	K854N	aaG	aaT	13	13	B.1.416.1	0.020313
S	854	K854R	aAg	aGg	13	13	B.1.617.2	0.000049
S	854	K854N	aaG	aaT	12	12	AY.121	0.001624
S	854	K854N	aaG	aaT	12	12	AY.33	0.000801
S	854	K854K	aaG	aaA	12	12	AY.43	0.000053
S	854	K854N	aaG	aaT	12	12	B.1.1	0.000218
S	854	K854K	aaG	aaA	11	11	AY.39	0.000272
S	854	K854K	aaG	aaA	11	11	AY.5	0.000227
S	854	K854K	aaG	aaA	11	11	B.1	0.000101
S	854	K854N	aaG	aaT	11	11	B.1.351	0.000327
S	854	K854N	aaG	aaT	10	10	AY.29	0.000158
S	854	K854E	Aag	Gag	10	10	AY.4	0.000016
S	854	K854N	aaG	aaT	10	10	AY.46	0.001041
S	854	K854Q	Aag	Cag	9	9	All	0.000002
S	854	K854N	aaG	aaT	9	9	AY.116.1	0.002803
S	854	K854N	aaG	aaT	9	9	B.1.177.83	0.013333
S	854	K854N	aaG	aaT	8	8	AY.20	0.000311
S	854	K854T	aAg	aCg	8	8	AY.44	0.000049
S	854	K854N	aaG	aaC	7	8	AY.65	0.003731
S	854	K854N	aaG	aaT	1	8	AY.65	0.000533
S	854	K854N	aaG	aaT	7	8	D.2	0.000525
S	854	K854N	aaG	aaC	1	8	D.2	0.000075
S	854	K854M	aAg	aTg	7	7	All	0.000001
S	854	K854N	aaG	aaT	7	7	AY.113	0.000997
S	854	K854N	aaG	aaT	7	7	AY.119	0.000247
S	854	K854N	aaG	aaT	7	7	AY.13	0.001127
S	854	K854N	aaG	aaT	7	7	AY.26	0.000198
S	854	K854K	aaG	aaA	7	7	AY.41	0.002058
S	854	K854N	aaG	aaT	7	7	AY.47	0.000218
S	854	K854N	aaG	aaT	7	7	AY.54	0.000667
S	854	K854del	AAG	---	7	7	B.1.177	0.000092
S	854	K854N	aaG	aaT	7	7	B.1.337	0.039106
S	854	K854N	aaG	aaT	7	7	B.1.429	0.000165
S	854	K854T	aAg	aCg	7	7	C.35	0.005418
S	854	K854K	aaG	aaA	7	7	P.1.4	0.006836
S	854	K854K	aaG	aaA	6	6	AY.3	0.00006
S	854	K854K	aaG	aaA	6	6	AY.33	0.000401
S	854	K854del	AAG	---	6	6	AY.4	0.000009
S	854	K854R	aAg	aGg	6	6	B.1	0.000055
S	854	K854N	aaG	aaT	6	6	B.1.139	0.004399
S	854	K854K	aaG	aaA	6	6	B.1.241	0.00487
S	854	K854del2	aAG	a--	5	5	All	0.000001
S	854	K854N	aaG	aaT	5	5	AY.100	0.00023
S	854	K854K	aaG	aaA	5	5	AY.110	0.000563
S	854	K854N	aaG	aaT	5	5	AY.42	0.000201
S	854	K854N	aaG	aaT	5	5	AY.6	0.000206
S	854	K854N	aaG	aaT	5	5	B.1.1.174	0.016892
S	854	K854N	aaG	aaT	5	5	B.1.1.214	0.000277
S	854	K854N	aaG	aaT	5	5	B.1.367	0.003962
S	854	K854K	aaG	aaA	4	4	AY.111	0.000733
S	854	K854R	aAg	aGg	4	4	AY.25	0.000024
S	854	K854del	AAG	---	4	4	AY.4.5	0.00043
S	854	K854del	AAG	---	4	4	AY.43	0.000018
S	854	K854K	aaG	aaA	4	4	AY.46.2	0.002541
S	854	K854N	aaG	aaT	4	4	AY.46.6	0.000289
S	854	K854N	aaG	aaT	4	4	AY.5.3	0.00135
S	854	K854K	aaG	aaA	4	4	AY.75	0.000224
S	854	K854K	aaG	aaA	4	4	AY.84	0.00175
S	854	K854R	aAg	aGg	4	4	AY.91	0.002922
S	854	K854N	aaG	aaT	4	4	AY.98.1	0.000194
S	854	K854R	aAg	aGg	4	4	AY.99	0.004197
S	854	K854N	aaG	aaT	4	4	B.1.1.1	0.001307
S	854	K854K	aaG	aaA	4	4	B.1.36.36	0.002408
S	854	K854N	aaG	aaT	4	4	B.1.596	0.000349
S	854	K854N	aaG	aaT	4	4	C.37	0.000464
S	854	K854N	aaG	aaT	4	4	P.1.14	0.000191
S	854	K854R	aAg	aGg	3	3	AY.103	0.000019
S	854	K854N	aaG	aaT	3	3	AY.111	0.000549
S	854	K854N	aaG	aaT	3	3	AY.114	0.000693
S	854	K854E	Aag	Gag	3	3	AY.117	0.000254
S	854	K854N	aaG	aaT	3	3	AY.120	0.000112
S	854	K854del	AAG	---	3	3	AY.25	0.000018
S	854	K854N	aaG	aaT	3	3	AY.45	0.000365
S	854	K854K	aaG	aaA	3	3	AY.72	0.004082
S	854	K854K	aaG	aaA	3	3	AY.78	0.004622
S	854	K854K	aaG	aaA	3	3	AY.92	0.000862
S	854	K854N	aaG	aaT	3	3	AY.98	0.000237
S	854	K854E	Aag	Gag	3	3	B.1	0.000027
S	854	K854T	aAg	aCg	3	3	B.1.177	0.00004
S	854	K854K	aaG	aaA	3	3	B.1.177.7	0.000495
S	854	K854N	aaG	aaT	3	3	B.1.617.1	0.000387
S	854	K854T	aAg	aCg	3	3	B.1.617.2	0.000011
S	854	K854R	aAg	aGg	3	3	D.2	0.000225
S	854	K854del	AAG	---	2	2		0.111111
S	854	K854K	aaG	aaA	2	2	A.1	0.000564
S	854	K854X	Aag	Tag	2	2	All	0
S	854	K854S	aAG	aGT	2	2	All	0
S	854	K854H	AaG	CaT	2	2	All	0
S	854	K854K	aaG	aaA	2	2	AY.102	0.000053
S	854	K854K	aaG	aaA	2	2	AY.108	0.002205
S	854	K854K	aaG	aaA	2	2	AY.114	0.000462
S	854	K854K	aaG	aaA	2	2	AY.117	0.000169
S	854	K854N	aaG	aaT	2	2	AY.117	0.000169
S	854	K854K	aaG	aaA	2	2	AY.118	0.000125
S	854	K854N	aaG	aaT	2	2	AY.22	0.004184
S	854	K854N	aaG	aaT	2	2	AY.23	0.000139
S	854	K854N	aaG	aaT	2	2	AY.23.1	0.000835
S	854	K854N	aaG	aaT	2	2	AY.34.1	0.00102
S	854	K854K	aaG	aaA	2	2	AY.35	0.000466
S	854	K854N	aaG	aaT	2	2	AY.4.2	0.000043
S	854	K854K	aaG	aaA	2	2	AY.4.5	0.000215
S	854	K854T	aAg	aCg	2	2	AY.43	0.000009
S	854	K854E	Aag	Gag	2	2	AY.44	0.000012
S	854	K854K	aaG	aaA	2	2	AY.44	0.000012
S	854	K854K	aaG	aaA	2	2	AY.45	0.000243
S	854	K854del	AAG	---	2	2	AY.46.2	0.001271
S	854	K854N	aaG	aaT	2	2	AY.46.2	0.001271
S	854	K854N	aaG	aaT	2	2	AY.46.4	0.000329
S	854	K854Q	Aag	Cag	2	2	AY.63	0.000774
S	854	K854K	aaG	aaA	2	2	AY.68	0.000547
S	854	K854K	aaG	aaA	2	2	AY.98	0.000158
S	854	K854K	aaG	aaA	2	2	AY.98.1	0.000097
S	854	K854N	aaG	aaT	2	2	AY.99.2	0.000184
S	854	K854Q	Aag	Cag	2	2	B.1	0.000018
S	854	K854del	AAG	---	2	2	B.1	0.000018
S	854	K854del	AAG	---	2	2	B.1.1	0.000036
S	854	K854K	aaG	aaA	2	2	B.1.1	0.000036
S	854	K854M	aAg	aTg	2	2	B.1.1.107	0.064516
S	854	K854N	aaG	aaT	2	2	B.1.1.39	0.001019
S	854	K854T	aAg	aCg	2	2	B.1.1.7	0.000002
S	854	K854R	aAg	aGg	2	2	B.1.160	0.000062
S	854	K854K	aaG	aaA	2	2	B.1.177.12	0.000303
S	854	K854del	AAG	---	2	2	B.1.177.4	0.000422
S	854	K854del	AAG	---	2	2	B.1.177.54	0.001213
S	854	K854N	aaG	aaT	2	2	B.1.177.81	0.000379
S	854	K854del	AAG	---	2	2	B.1.2	0.000018
S	854	K854K	aaG	aaA	2	2	B.1.221	0.000142
S	854	K854N	aaG	aaT	2	2	B.1.438.1	0.000215
S	854	K854N	aaG	aaC	2	2	B.1.466.2	0.000782
S	854	K854N	aaG	aaT	2	2	B.1.525	0.000226
S	854	K854N	aaG	aaT	2	2	B.1.526	0.000047
S	854	K854del	AAG	---	2	2	B.1.617.2	0.000008
S	854	K854del2	aAG	a--	2	2	B.1.617.2	0.000008
S	854	K854del	AAG	---	1	1	A	0.000387
S	854	K854N	aaG	aaT	1	1	A.1	0.000282
S	854	K854R	aAg	aGg	1	1	A.2	0.000662
S	854	K854R	aAg	aGg	1	1	A.21	0.00277
S	854	K854N	aaG	aaC	1	1	A.28	0.002646
S	854	K854del	AAG	---	1	1	AH.3	0.003802
S	854	K854del1	Aag	-ag	1	1	All	0
S	854	K854N	aaG	aaT	1	1	AU.1	0.001266
S	854	K854R	aAg	aGg	1	1	AU.3	0.00211
S	854	K854N	aaG	aaT	1	1	AY.10	0.00053
S	854	K854N	aaG	aaT	1	1	AY.101	0.00049
S	854	K854M	aAg	aTg	1	1	AY.103	0.000006
S	854	K854K	aaG	aaA	1	1	AY.106	0.000335
S	854	K854R	aAg	aGg	1	1	AY.107	0.000466
S	854	K854T	aAg	aCg	1	1	AY.111	0.000183
S	854	K854K	aaG	aaA	1	1	AY.113	0.000142
S	854	K854N	aaG	aaT	1	1	AY.115	0.005208
S	854	K854R	aAg	aGg	1	1	AY.116	0.000287
S	854	K854N	aaG	aaT	1	1	AY.116	0.000287
S	854	K854del	AAG	---	1	1	AY.117	0.000085
S	854	K854N	aaG	aaT	1	1	AY.118	0.000063
S	854	K854R	aAg	aGg	1	1	AY.119	0.000035
S	854	K854K	aaG	aaA	1	1	AY.119	0.000035
S	854	K854R	aAg	aGg	1	1	AY.12	0.000316
S	854	K854del	AAG	---	1	1	AY.120	0.000037
S	854	K854R	aAg	aGg	1	1	AY.120.2	0.001285
S	854	K854N	aaG	aaT	1	1	AY.14	0.000088
S	854	K854N	aaG	aaT	1	1	AY.15	0.002222
S	854	K854N	aaG	aaT	1	1	AY.19	0.00114
S	854	K854del2	aAG	a--	1	1	AY.25	0.000006
S	854	K854K	aaG	aaA	1	1	AY.25	0.000006
S	854	K854R	aAg	aGg	1	1	AY.26	0.000028
S	854	K854T	aAg	aCg	1	1	AY.26	0.000028
S	854	K854K	aaG	aaA	1	1	AY.29	0.000016
S	854	K854H	AaG	CaT	1	1	AY.29	0.000016
S	854	K854del	AAG	---	1	1	AY.3.1	0.000085
S	854	K854N	aaG	aaT	1	1	AY.3.1	0.000085
S	854	K854M	aAg	aTg	1	1	AY.33	0.000067
S	854	K854K	aaG	aaA	1	1	AY.34	0.000097
S	854	K854N	aaG	aaT	1	1	AY.35	0.000233
S	854	K854E	Aag	Gag	1	1	AY.35	0.000233
S	854	K854del	AAG	---	1	1	AY.36	0.000148
S	854	K854N	aaG	aaT	1	1	AY.37	0.000316
S	854	K854E	Aag	Gag	1	1	AY.39	0.000025
S	854	K854T	aAg	aCg	1	1	AY.4	0.000002
S	854	K854R	aAg	aGg	1	1	AY.4	0.000002
S	854	K854Q	Aag	Cag	1	1	AY.4	0.000002
S	854	K854N	aaG	aaT	1	1	AY.4.4	0.000409
S	854	K854del1	Aag	-ag	1	1	AY.4.5	0.000107
S	854	K854N	aaG	aaT	1	1	AY.4.5	0.000107
S	854	K854del2	aAG	a--	1	1	AY.43	0.000004
S	854	K854R	aAg	aGg	1	1	AY.43	0.000004
S	854	K854M	aAg	aTg	1	1	AY.43	0.000004
S	854	K854E	Aag	Gag	1	1	AY.43	0.000004
S	854	K854del	AAG	---	1	1	AY.44	0.000006
S	854	K854S	aAG	aGT	1	1	AY.44	0.000006
S	854	K854K	aaG	aaA	1	1	AY.46	0.000104
S	854	K854K	aaG	aaA	1	1	AY.46.1	0.001027
S	854	K854R	aAg	aGg	1	1	AY.46.6	0.000072
S	854	K854T	aAg	aCg	1	1	AY.5	0.000021
S	854	K854del	AAG	---	1	1	AY.5	0.000021
S	854	K854N	aaG	aaT	1	1	AY.5.4	0.000277
S	854	K854K	aaG	aaA	1	1	AY.55	0.000917
S	854	K854K	aaG	aaA	1	1	AY.59	0.00053
S	854	K854K	aaG	aaA	1	1	AY.6	0.000041
S	854	K854N	aaG	aaT	1	1	AY.60	0.000938
S	854	K854T	aAg	aCg	1	1	AY.64	0.000595
S	854	K854del	AAG	---	1	1	AY.65	0.000533
S	854	K854N	aaG	aaT	1	1	AY.7	0.000196
S	854	K854N	aaG	aaT	1	1	AY.7.1	0.000113
S	854	K854N	aaG	aaT	1	1	AY.7.2	0.000559
S	854	K854del	AAG	---	1	1	AY.75	0.000056
S	854	K854N	aaG	aaT	1	1	AY.75.1	0.00018
S	854	K854R	aAg	aGg	1	1	AY.75.1	0.00018
S	854	K854N	aaG	aaT	1	1	AY.77	0.001127
S	854	K854K	aaG	aaA	1	1	AY.77	0.001127
S	854	K854K	aaG	aaA	1	1	AY.82	0.001357
S	854	K854N	aaG	aaT	1	1	AY.82	0.001357
S	854	K854N	aaG	aaT	1	1	AY.84	0.000437
S	854	K854N	aaG	aaT	1	1	AY.85	0.000427
S	854	K854R	aAg	aGg	1	1	AY.9.2	0.000037
S	854	K854K	aaG	aaA	1	1	AY.91	0.00073
S	854	K854T	aAg	aCg	1	1	AY.91.1	0.004065
S	854	K854N	aaG	aaT	1	1	AY.92	0.000287
S	854	K854K	aaG	aaA	1	1	AY.93	0.000273
S	854	K854N	aaG	aaT	1	1	AY.94	0.000443
S	854	K854K	aaG	aaA	1	1	AY.96	0.002075
S	854	K854del	AAG	---	1	1	AY.98.1	0.000048
S	854	K854N	aaG	aaT	1	1	AY.99	0.001049
S	854	K854K	aaG	aaA	1	1	AY.99	0.001049
S	854	K854del	AAG	---	1	1	AY.99.1	0.001553
S	854	K854N	aaG	aaT	1	1	AY.99.1	0.001553
S	854	K854T	aAg	aCg	1	1	AZ.1	0.000867
S	854	K854R	aAg	aGg	1	1	B	0.000128
S	854	K854K	aaG	aaA	1	1	B	0.000128
S	854	K854R	aAg	aGg	1	1	B.1.1	0.000018
S	854	K854Q	Aag	Cag	1	1	B.1.1	0.000018
S	854	K854E	Aag	Gag	1	1	B.1.1	0.000018
S	854	K854N	aaG	aaT	1	1	B.1.1.134	0.011364
S	854	K854del	AAG	---	1	1	B.1.1.159	0.004673
S	854	K854X	Aag	Tag	1	1	B.1.1.194	0.00495
S	854	K854S	aAG	aGT	1	1	B.1.1.216	0.00089
S	854	K854del	AAG	---	1	1	B.1.1.218	0.007692
S	854	K854R	aAg	aGg	1	1	B.1.1.230	0.009174
S	854	K854del	AAG	---	1	1	B.1.1.236	0.006897
S	854	K854N	aaG	aaT	1	1	B.1.1.25	0.000569
S	854	K854R	aAg	aGg	1	1	B.1.1.294	0.001266
S	854	K854N	aaG	aaT	1	1	B.1.1.3	0.008696
S	854	K854N	aaG	aaT	1	1	B.1.1.311	0.000358
S	854	K854del	AAG	---	1	1	B.1.1.312	0.001912
S	854	K854T	aAg	aCg	1	1	B.1.1.317	0.000412
S	854	K854N	aaG	aaT	1	1	B.1.1.33	0.000421
S	854	K854N	aaG	aaT	1	1	B.1.1.348	0.000796
S	854	K854N	aaG	aaT	1	1	B.1.1.371	0.010417
S	854	K854N	aaG	aaT	1	1	B.1.1.372	0.000689
S	854	K854T	aAg	aCg	1	1	B.1.1.388	0.045455
S	854	K854K	aaG	aaA	1	1	B.1.1.39	0.00051
S	854	K854N	aaG	aaT	1	1	B.1.1.397	0.002252
S	854	K854N	aaG	aaT	1	1	B.1.1.404	0.015873
S	854	K854N	aaG	aaT	1	1	B.1.1.409	0.002833
S	854	K854N	aaG	aaT	1	1	B.1.1.416	0.000905
S	854	K854K	aaG	aaA	1	1	B.1.1.416	0.000905
S	854	K854K	aaG	aaA	1	1	B.1.1.519	0.00004
S	854	K854N	aaG	aaT	1	1	B.1.1.519	0.00004
S	854	K854N	aaG	aaT	1	1	B.1.1.63	0.000386
S	854	K854del2	aAG	a--	1	1	B.1.1.7	0.000001
S	854	K854E	Aag	Gag	1	1	B.1.1.7	0.000001
S	854	K854H	AaG	CaT	1	1	B.1.1.7	0.000001
S	854	K854M	aAg	aTg	1	1	B.1.1.7	0.000001
S	854	K854Q	Aag	Cag	1	1	B.1.1.7	0.000001
S	854	K854N	aaG	aaT	1	1	B.1.1.70	0.000341
S	854	K854X	Aag	Tag	1	1	B.1.112	0.005181
S	854	K854K	aaG	aaA	1	1	B.1.160.30	0.002976
S	854	K854K	aaG	aaA	1	1	B.1.164	0.014925
S	854	K854Q	Aag	Cag	1	1	B.1.177	0.000013
S	854	K854N	aaG	aaT	1	1	B.1.177.17	0.000821
S	854	K854del	AAG	---	1	1	B.1.177.17	0.000821
S	854	K854del	AAG	---	1	1	B.1.177.18	0.00116
S	854	K854N	aaG	aaT	1	1	B.1.177.33	0.001645
S	854	K854N	aaG	aaT	1	1	B.1.177.35	0.000691
S	854	K854K	aaG	aaA	1	1	B.1.177.4	0.000211
S	854	K854del	AAG	---	1	1	B.1.177.56	0.000668
S	854	K854del	AAG	---	1	1	B.1.177.58	0.001332
S	854	K854del	AAG	---	1	1	B.1.177.60	0.000218
S	854	K854del	AAG	---	1	1	B.1.177.63	0.002703
S	854	K854del	AAG	---	1	1	B.1.177.83	0.001481
S	854	K854K	aaG	aaA	1	1	B.1.177.83	0.001481
S	854	K854N	aaG	aaT	1	1	B.1.177.86	0.000183
S	854	K854del	AAG	---	1	1	B.1.177.87	0.000728
S	854	K854N	aaG	aaT	1	1	B.1.177.87	0.000728
S	854	K854del	AAG	---	1	1	B.1.179	0.003759
S	854	K854T	aAg	aCg	1	1	B.1.2	0.000009
S	854	K854Q	Aag	Cag	1	1	B.1.2	0.000009
S	854	K854N	aaG	aaT	1	1	B.1.221.3	0.000833
S	854	K854N	aaG	aaT	1	1	B.1.242	0.018868
S	854	K854N	aaG	aaT	1	1	B.1.258	0.000067
S	854	K854del	AAG	---	1	1	B.1.258	0.000067
S	854	K854N	aaG	aaT	1	1	B.1.349	0.000715
S	854	K854del	AAG	---	1	1	B.1.351	0.00003
S	854	K854N	aaG	aaT	1	1	B.1.351.2	0.000303
S	854	K854N	aaG	aaT	1	1	B.1.36.17	0.000494
S	854	K854del	AAG	---	1	1	B.1.36.18	0.00042
S	854	K854K	aaG	aaA	1	1	B.1.36.18	0.00042
S	854	K854R	aAg	aGg	1	1	B.1.36.36	0.000602
S	854	K854R	aAg	aGg	1	1	B.1.396	0.000706
S	854	K854K	aaG	aaA	1	1	B.1.427	0.00005
S	854	K854R	aAg	aGg	1	1	B.1.427	0.00005
S	854	K854N	aaG	aaT	1	1	B.1.428	0.00102
S	854	K854K	aaG	aaA	1	1	B.1.429	0.000024
S	854	K854K	aaG	aaA	1	1	B.1.466.2	0.000391
S	854	K854R	aAg	aGg	1	1	B.1.525	0.000113
S	854	K854T	aAg	aCg	1	1	B.1.527	0.003704
S	854	K854N	aaG	aaT	1	1	B.1.561	0.000397
S	854	K854N	aaG	aaT	1	1	B.1.568	0.001111
S	854	K854N	aaG	aaT	1	1	B.1.575	0.000303
S	854	K854R	aAg	aGg	1	1	B.1.577	0.000687
S	854	K854R	aAg	aGg	1	1	B.1.595	0.000261
S	854	K854N	aaG	aaT	1	1	B.1.610	0.003546
S	854	K854K	aaG	aaA	1	1	B.1.621.1	0.000506
S	854	K854N	aaG	aaT	1	1	B.1.628	0.000352
S	854	K854R	aAg	aGg	1	1	B.4.5	0.011905
S	854	K854M	aAg	aTg	1	1	D.2	0.000075
S	854	K854E	Aag	Gag	1	1	D.2	0.000075
S	854	K854N	aaG	aaT	1	1	D.3	0.005917
S	854	K854K	aaG	aaA	1	1	N.5	0.001767
S	854	K854K	aaG	aaA	1	1	P.1	0.000016
S	854	K854del	AAG	---	1	1	P.1.1	0.000318
S	854	K854del	AAG	---	1	1	P.1.13	0.000898
S	854	K854del	AAG	---	1	1	P.1.15	0.000232
S	854	K854N	aaG	aaT	1	1	P.1.17	0.000162
S	854	K854N	aaG	aaT	1	1	P.2	0.000187
S	854	K854del	AAG	---	1	1	Q.2	0.000613
S	854	K854T	aAg	aCg	1	1	Q.4	0.000455
S	854	K854del	AAG	---	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.