CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 854

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S854K854NnonsynaaGaaT461045870.99501124122-24124
S854K854NnonsynaaGaaC4610230.0049891524122-24124
S854K854KsynaaGaaA39523952124122-24124
S854K854RnonsynaAgaGg146146124122-24124
S854K854deldelAAG---116116124122-24124
S854K854TnonsynaAgaCg3737124122-24124
S854K854EnonsynAagGag2424124122-24124
S854K854QnonsynAagCag99124122-24124
S854K854MnonsynaAgaTg77124122-24124
S854K854del2delaAGa--55124122-24124
S854K854XnonsynAagTag22124122-24124
S854K854SnonsynaAGaGT22124122-24124
S854K854HnonsynAaGCaT22124122-24124
S854K854del1delAag-ag11124122-24124

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S854K854NaaGaaT45874610All0.000877
S854K854NaaGaaC234610All0.000004
S854K854KaaGaaA39523952All0.000756
S854K854NaaGaaT19982002AY.40.00311
S854K854NaaGaaC42002AY.40.000006
S854K854KaaGaaA13411341AY.320.714058
S854K854KaaGaaA10351035AY.950.787671
S854K854NaaGaaT10151015B.1.6230.544528
S854K854KaaGaaA515515AY.1210.069689
S854K854KaaGaaA376376B.1.1.70.000337
S854K854KaaGaaA324324B.1.617.20.00122
S854K854NaaGaaT208209AY.490.664537
S854K854NaaGaaC1209AY.490.003195
S854K854NaaGaaT164165B.1.617.20.000618
S854K854NaaGaaC1165B.1.617.20.000004
S854K854NaaGaaT146148B.1.1.70.000131
S854K854NaaGaaC2148B.1.1.70.000002
S854K854RaAgaGg146146All0.000028
S854K854NaaGaaT121121AY.1020.003208
S854K854delAAG---116116All0.000022
S854K854NaaGaaT9294AY.430.000408
S854K854NaaGaaC294AY.430.000009
S854K854NaaGaaT6969C.160.073171
S854K854NaaGaaT6565AY.1030.000404
S854K854delAAG---4343B.1.1.70.000038
S854K854NaaGaaT4242B.1.1.3841
S854K854NaaGaaT4040B.1.1770.000527
S854K854KaaGaaA3838B.1.2580.002529
S854K854TaAgaCg3737All0.000007
S854K854NaaGaaT3535AY.390.000865
S854K854KaaGaaA3434AY.420.001368
S854K854NaaGaaT3233AY.750.001793
S854K854NaaGaaC133AY.750.000056
S854K854NaaGaaT3232AY.440.000195
S854K854KaaGaaA2828B.1.177.810.005301
S854K854NaaGaaT2727B.1.20.000238
S854K854KaaGaaA2525B.1.20.00022
S854K854EAagGag2424All0.000005
S854K854NaaGaaT2222B.10.000202
S854K854NaaGaaT1919P.10.000299
S854K854NaaGaaT1818P.1.20.020809
S854K854RaAgaGg1717AY.380.008487
S854K854NaaGaaT1616B.1.1600.000499
S854K854KaaGaaA1515AY.1030.000093
S854K854KaaGaaA1515AY.40.000023
S854K854NaaGaaT1515AY.50.00031
S854K854KaaGaaA1414AY.230.000976
S854K854NaaGaaT1314AY.250.000078
S854K854NaaGaaC114AY.250.000006
S854K854NaaGaaT1414AY.90.000946
S854K854NaaGaaT1414AY.9.20.000514
S854K854KaaGaaA1414B.1.5260.000329
S854K854RaAgaGg1313AY.140.001144
S854K854NaaGaaT1313AY.30.000129
S854K854RaAgaGg1313AY.4.20.000282
S854K854RaAgaGg1313AY.450.001582
S854K854RaAgaGg1313AY.60.000535
S854K854NaaGaaT1313AY.610.001362
S854K854RaAgaGg1313B.1.1.70.000012
S854K854NaaGaaT1313B.1.416.10.020313
S854K854RaAgaGg1313B.1.617.20.000049
S854K854NaaGaaT1212AY.1210.001624
S854K854NaaGaaT1212AY.330.000801
S854K854KaaGaaA1212AY.430.000053
S854K854NaaGaaT1212B.1.10.000218
S854K854KaaGaaA1111AY.390.000272
S854K854KaaGaaA1111AY.50.000227
S854K854KaaGaaA1111B.10.000101
S854K854NaaGaaT1111B.1.3510.000327
S854K854NaaGaaT1010AY.290.000158
S854K854EAagGag1010AY.40.000016
S854K854NaaGaaT1010AY.460.001041
S854K854QAagCag99All0.000002
S854K854NaaGaaT99AY.116.10.002803
S854K854NaaGaaT99B.1.177.830.013333
S854K854NaaGaaT88AY.200.000311
S854K854TaAgaCg88AY.440.000049
S854K854NaaGaaC78AY.650.003731
S854K854NaaGaaT18AY.650.000533
S854K854NaaGaaT78D.20.000525
S854K854NaaGaaC18D.20.000075
S854K854MaAgaTg77All0.000001
S854K854NaaGaaT77AY.1130.000997
S854K854NaaGaaT77AY.1190.000247
S854K854NaaGaaT77AY.130.001127
S854K854NaaGaaT77AY.260.000198
S854K854KaaGaaA77AY.410.002058
S854K854NaaGaaT77AY.470.000218
S854K854NaaGaaT77AY.540.000667
S854K854delAAG---77B.1.1770.000092
S854K854NaaGaaT77B.1.3370.039106
S854K854NaaGaaT77B.1.4290.000165
S854K854TaAgaCg77C.350.005418
S854K854KaaGaaA77P.1.40.006836
S854K854KaaGaaA66AY.30.00006
S854K854KaaGaaA66AY.330.000401
S854K854delAAG---66AY.40.000009
S854K854RaAgaGg66B.10.000055
S854K854NaaGaaT66B.1.1390.004399
S854K854KaaGaaA66B.1.2410.00487
S854K854del2aAGa--55All0.000001
S854K854NaaGaaT55AY.1000.00023
S854K854KaaGaaA55AY.1100.000563
S854K854NaaGaaT55AY.420.000201
S854K854NaaGaaT55AY.60.000206
S854K854NaaGaaT55B.1.1.1740.016892
S854K854NaaGaaT55B.1.1.2140.000277
S854K854NaaGaaT55B.1.3670.003962
S854K854KaaGaaA44AY.1110.000733
S854K854RaAgaGg44AY.250.000024
S854K854delAAG---44AY.4.50.00043
S854K854delAAG---44AY.430.000018
S854K854KaaGaaA44AY.46.20.002541
S854K854NaaGaaT44AY.46.60.000289
S854K854NaaGaaT44AY.5.30.00135
S854K854KaaGaaA44AY.750.000224
S854K854KaaGaaA44AY.840.00175
S854K854RaAgaGg44AY.910.002922
S854K854NaaGaaT44AY.98.10.000194
S854K854RaAgaGg44AY.990.004197
S854K854NaaGaaT44B.1.1.10.001307
S854K854KaaGaaA44B.1.36.360.002408
S854K854NaaGaaT44B.1.5960.000349
S854K854NaaGaaT44C.370.000464
S854K854NaaGaaT44P.1.140.000191
S854K854RaAgaGg33AY.1030.000019
S854K854NaaGaaT33AY.1110.000549
S854K854NaaGaaT33AY.1140.000693
S854K854EAagGag33AY.1170.000254
S854K854NaaGaaT33AY.1200.000112
S854K854delAAG---33AY.250.000018
S854K854NaaGaaT33AY.450.000365
S854K854KaaGaaA33AY.720.004082
S854K854KaaGaaA33AY.780.004622
S854K854KaaGaaA33AY.920.000862
S854K854NaaGaaT33AY.980.000237
S854K854EAagGag33B.10.000027
S854K854TaAgaCg33B.1.1770.00004
S854K854KaaGaaA33B.1.177.70.000495
S854K854NaaGaaT33B.1.617.10.000387
S854K854TaAgaCg33B.1.617.20.000011
S854K854RaAgaGg33D.20.000225
S854K854delAAG---220.111111
S854K854KaaGaaA22A.10.000564
S854K854XAagTag22All0
S854K854SaAGaGT22All0
S854K854HAaGCaT22All0
S854K854KaaGaaA22AY.1020.000053
S854K854KaaGaaA22AY.1080.002205
S854K854KaaGaaA22AY.1140.000462
S854K854KaaGaaA22AY.1170.000169
S854K854NaaGaaT22AY.1170.000169
S854K854KaaGaaA22AY.1180.000125
S854K854NaaGaaT22AY.220.004184
S854K854NaaGaaT22AY.230.000139
S854K854NaaGaaT22AY.23.10.000835
S854K854NaaGaaT22AY.34.10.00102
S854K854KaaGaaA22AY.350.000466
S854K854NaaGaaT22AY.4.20.000043
S854K854KaaGaaA22AY.4.50.000215
S854K854TaAgaCg22AY.430.000009
S854K854EAagGag22AY.440.000012
S854K854KaaGaaA22AY.440.000012
S854K854KaaGaaA22AY.450.000243
S854K854delAAG---22AY.46.20.001271
S854K854NaaGaaT22AY.46.20.001271
S854K854NaaGaaT22AY.46.40.000329
S854K854QAagCag22AY.630.000774
S854K854KaaGaaA22AY.680.000547
S854K854KaaGaaA22AY.980.000158
S854K854KaaGaaA22AY.98.10.000097
S854K854NaaGaaT22AY.99.20.000184
S854K854QAagCag22B.10.000018
S854K854delAAG---22B.10.000018
S854K854delAAG---22B.1.10.000036
S854K854KaaGaaA22B.1.10.000036
S854K854MaAgaTg22B.1.1.1070.064516
S854K854NaaGaaT22B.1.1.390.001019
S854K854TaAgaCg22B.1.1.70.000002
S854K854RaAgaGg22B.1.1600.000062
S854K854KaaGaaA22B.1.177.120.000303
S854K854delAAG---22B.1.177.40.000422
S854K854delAAG---22B.1.177.540.001213
S854K854NaaGaaT22B.1.177.810.000379
S854K854delAAG---22B.1.20.000018
S854K854KaaGaaA22B.1.2210.000142
S854K854NaaGaaT22B.1.438.10.000215
S854K854NaaGaaC22B.1.466.20.000782
S854K854NaaGaaT22B.1.5250.000226
S854K854NaaGaaT22B.1.5260.000047
S854K854delAAG---22B.1.617.20.000008
S854K854del2aAGa--22B.1.617.20.000008
S854K854delAAG---11A0.000387
S854K854NaaGaaT11A.10.000282
S854K854RaAgaGg11A.20.000662
S854K854RaAgaGg11A.210.00277
S854K854NaaGaaC11A.280.002646
S854K854delAAG---11AH.30.003802
S854K854del1Aag-ag11All0
S854K854NaaGaaT11AU.10.001266
S854K854RaAgaGg11AU.30.00211
S854K854NaaGaaT11AY.100.00053
S854K854NaaGaaT11AY.1010.00049
S854K854MaAgaTg11AY.1030.000006
S854K854KaaGaaA11AY.1060.000335
S854K854RaAgaGg11AY.1070.000466
S854K854TaAgaCg11AY.1110.000183
S854K854KaaGaaA11AY.1130.000142
S854K854NaaGaaT11AY.1150.005208
S854K854RaAgaGg11AY.1160.000287
S854K854NaaGaaT11AY.1160.000287
S854K854delAAG---11AY.1170.000085
S854K854NaaGaaT11AY.1180.000063
S854K854RaAgaGg11AY.1190.000035
S854K854KaaGaaA11AY.1190.000035
S854K854RaAgaGg11AY.120.000316
S854K854delAAG---11AY.1200.000037
S854K854RaAgaGg11AY.120.20.001285
S854K854NaaGaaT11AY.140.000088
S854K854NaaGaaT11AY.150.002222
S854K854NaaGaaT11AY.190.00114
S854K854del2aAGa--11AY.250.000006
S854K854KaaGaaA11AY.250.000006
S854K854RaAgaGg11AY.260.000028
S854K854TaAgaCg11AY.260.000028
S854K854KaaGaaA11AY.290.000016
S854K854HAaGCaT11AY.290.000016
S854K854delAAG---11AY.3.10.000085
S854K854NaaGaaT11AY.3.10.000085
S854K854MaAgaTg11AY.330.000067
S854K854KaaGaaA11AY.340.000097
S854K854NaaGaaT11AY.350.000233
S854K854EAagGag11AY.350.000233
S854K854delAAG---11AY.360.000148
S854K854NaaGaaT11AY.370.000316
S854K854EAagGag11AY.390.000025
S854K854TaAgaCg11AY.40.000002
S854K854RaAgaGg11AY.40.000002
S854K854QAagCag11AY.40.000002
S854K854NaaGaaT11AY.4.40.000409
S854K854del1Aag-ag11AY.4.50.000107
S854K854NaaGaaT11AY.4.50.000107
S854K854del2aAGa--11AY.430.000004
S854K854RaAgaGg11AY.430.000004
S854K854MaAgaTg11AY.430.000004
S854K854EAagGag11AY.430.000004
S854K854delAAG---11AY.440.000006
S854K854SaAGaGT11AY.440.000006
S854K854KaaGaaA11AY.460.000104
S854K854KaaGaaA11AY.46.10.001027
S854K854RaAgaGg11AY.46.60.000072
S854K854TaAgaCg11AY.50.000021
S854K854delAAG---11AY.50.000021
S854K854NaaGaaT11AY.5.40.000277
S854K854KaaGaaA11AY.550.000917
S854K854KaaGaaA11AY.590.00053
S854K854KaaGaaA11AY.60.000041
S854K854NaaGaaT11AY.600.000938
S854K854TaAgaCg11AY.640.000595
S854K854delAAG---11AY.650.000533
S854K854NaaGaaT11AY.70.000196
S854K854NaaGaaT11AY.7.10.000113
S854K854NaaGaaT11AY.7.20.000559
S854K854delAAG---11AY.750.000056
S854K854NaaGaaT11AY.75.10.00018
S854K854RaAgaGg11AY.75.10.00018
S854K854NaaGaaT11AY.770.001127
S854K854KaaGaaA11AY.770.001127
S854K854KaaGaaA11AY.820.001357
S854K854NaaGaaT11AY.820.001357
S854K854NaaGaaT11AY.840.000437
S854K854NaaGaaT11AY.850.000427
S854K854RaAgaGg11AY.9.20.000037
S854K854KaaGaaA11AY.910.00073
S854K854TaAgaCg11AY.91.10.004065
S854K854NaaGaaT11AY.920.000287
S854K854KaaGaaA11AY.930.000273
S854K854NaaGaaT11AY.940.000443
S854K854KaaGaaA11AY.960.002075
S854K854delAAG---11AY.98.10.000048
S854K854NaaGaaT11AY.990.001049
S854K854KaaGaaA11AY.990.001049
S854K854delAAG---11AY.99.10.001553
S854K854NaaGaaT11AY.99.10.001553
S854K854TaAgaCg11AZ.10.000867
S854K854RaAgaGg11B0.000128
S854K854KaaGaaA11B0.000128
S854K854RaAgaGg11B.1.10.000018
S854K854QAagCag11B.1.10.000018
S854K854EAagGag11B.1.10.000018
S854K854NaaGaaT11B.1.1.1340.011364
S854K854delAAG---11B.1.1.1590.004673
S854K854XAagTag11B.1.1.1940.00495
S854K854SaAGaGT11B.1.1.2160.00089
S854K854delAAG---11B.1.1.2180.007692
S854K854RaAgaGg11B.1.1.2300.009174
S854K854delAAG---11B.1.1.2360.006897
S854K854NaaGaaT11B.1.1.250.000569
S854K854RaAgaGg11B.1.1.2940.001266
S854K854NaaGaaT11B.1.1.30.008696
S854K854NaaGaaT11B.1.1.3110.000358
S854K854delAAG---11B.1.1.3120.001912
S854K854TaAgaCg11B.1.1.3170.000412
S854K854NaaGaaT11B.1.1.330.000421
S854K854NaaGaaT11B.1.1.3480.000796
S854K854NaaGaaT11B.1.1.3710.010417
S854K854NaaGaaT11B.1.1.3720.000689
S854K854TaAgaCg11B.1.1.3880.045455
S854K854KaaGaaA11B.1.1.390.00051
S854K854NaaGaaT11B.1.1.3970.002252
S854K854NaaGaaT11B.1.1.4040.015873
S854K854NaaGaaT11B.1.1.4090.002833
S854K854NaaGaaT11B.1.1.4160.000905
S854K854KaaGaaA11B.1.1.4160.000905
S854K854KaaGaaA11B.1.1.5190.00004
S854K854NaaGaaT11B.1.1.5190.00004
S854K854NaaGaaT11B.1.1.630.000386
S854K854del2aAGa--11B.1.1.70.000001
S854K854EAagGag11B.1.1.70.000001
S854K854HAaGCaT11B.1.1.70.000001
S854K854MaAgaTg11B.1.1.70.000001
S854K854QAagCag11B.1.1.70.000001
S854K854NaaGaaT11B.1.1.700.000341
S854K854XAagTag11B.1.1120.005181
S854K854KaaGaaA11B.1.160.300.002976
S854K854KaaGaaA11B.1.1640.014925
S854K854QAagCag11B.1.1770.000013
S854K854NaaGaaT11B.1.177.170.000821
S854K854delAAG---11B.1.177.170.000821
S854K854delAAG---11B.1.177.180.00116
S854K854NaaGaaT11B.1.177.330.001645
S854K854NaaGaaT11B.1.177.350.000691
S854K854KaaGaaA11B.1.177.40.000211
S854K854delAAG---11B.1.177.560.000668
S854K854delAAG---11B.1.177.580.001332
S854K854delAAG---11B.1.177.600.000218
S854K854delAAG---11B.1.177.630.002703
S854K854delAAG---11B.1.177.830.001481
S854K854KaaGaaA11B.1.177.830.001481
S854K854NaaGaaT11B.1.177.860.000183
S854K854delAAG---11B.1.177.870.000728
S854K854NaaGaaT11B.1.177.870.000728
S854K854delAAG---11B.1.1790.003759
S854K854TaAgaCg11B.1.20.000009
S854K854QAagCag11B.1.20.000009
S854K854NaaGaaT11B.1.221.30.000833
S854K854NaaGaaT11B.1.2420.018868
S854K854NaaGaaT11B.1.2580.000067
S854K854delAAG---11B.1.2580.000067
S854K854NaaGaaT11B.1.3490.000715
S854K854delAAG---11B.1.3510.00003
S854K854NaaGaaT11B.1.351.20.000303
S854K854NaaGaaT11B.1.36.170.000494
S854K854delAAG---11B.1.36.180.00042
S854K854KaaGaaA11B.1.36.180.00042
S854K854RaAgaGg11B.1.36.360.000602
S854K854RaAgaGg11B.1.3960.000706
S854K854KaaGaaA11B.1.4270.00005
S854K854RaAgaGg11B.1.4270.00005
S854K854NaaGaaT11B.1.4280.00102
S854K854KaaGaaA11B.1.4290.000024
S854K854KaaGaaA11B.1.466.20.000391
S854K854RaAgaGg11B.1.5250.000113
S854K854TaAgaCg11B.1.5270.003704
S854K854NaaGaaT11B.1.5610.000397
S854K854NaaGaaT11B.1.5680.001111
S854K854NaaGaaT11B.1.5750.000303
S854K854RaAgaGg11B.1.5770.000687
S854K854RaAgaGg11B.1.5950.000261
S854K854NaaGaaT11B.1.6100.003546
S854K854KaaGaaA11B.1.621.10.000506
S854K854NaaGaaT11B.1.6280.000352
S854K854RaAgaGg11B.4.50.011905
S854K854MaAgaTg11D.20.000075
S854K854EAagGag11D.20.000075
S854K854NaaGaaT11D.30.005917
S854K854KaaGaaA11N.50.001767
S854K854KaaGaaA11P.10.000016
S854K854delAAG---11P.1.10.000318
S854K854delAAG---11P.1.130.000898
S854K854delAAG---11P.1.150.000232
S854K854NaaGaaT11P.1.170.000162
S854K854NaaGaaT11P.20.000187
S854K854delAAG---11Q.20.000613
S854K854TaAgaCg11Q.40.000455
S854K854delAAG---11U.30.003861