CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 847 | R847K | nonsyn | aGa | aAa | 629 | 629 | 1 | 24101-24103 | |
S | 847 | R847T | nonsyn | aGa | aCa | 263 | 263 | 1 | 24101-24103 | |
S | 847 | R847R | syn | agA | agG | 169 | 155 | 0.91716 | 24101-24103 | |
S | 847 | R847R | syn | Aga | Cga | 169 | 13 | 0.0769231 | 24101-24103 | |
S | 847 | R847R | syn | AgA | CgG | 169 | 1 | 0.00591716 | 24101-24103 | |
S | 847 | R847I | nonsyn | aGa | aTa | 98 | 97 | 0.989796 | 24101-24103 | |
S | 847 | R847I | nonsyn | aGA | aTC | 98 | 1 | 0.0102041 | 24101-24103 | |
S | 847 | R847del | del | AGA | --- | 88 | 88 | 1 | 24101-24103 | |
S | 847 | R847S | nonsyn | agA | agT | 21 | 13 | 0.619048 | 24101-24103 | |
S | 847 | R847S | nonsyn | agA | agC | 21 | 7 | 0.333333 | 24101-24103 | |
S | 847 | R847S | nonsyn | AGa | TCa | 21 | 1 | 0.047619 | 24101-24103 | |
S | 847 | R847G | nonsyn | Aga | Gga | 15 | 14 | 0.933333 | 24101-24103 | |
S | 847 | R847G | nonsyn | AgA | GgG | 15 | 1 | 0.0666667 | 24101-24103 | |
S | 847 | R847del1 | del | agA | ag- | 5 | 4 | 0.8 | 24101-24103 | |
S | 847 | R847del1 | del | Aga | -ga | 5 | 1 | 0.2 | 24101-24103 | |
S | 847 | R847del2 | del | aGA | a-- | 4 | 4 | 1 | 24101-24103 | |
S | 847 | R847X | nonsyn | Aga | Tga | 2 | 2 | 1 | 24101-24103 | |
S | 847 | R847M | nonsyn | aGA | aTG | 1 | 1 | 1 | 24101-24103 | |
S | 847 | R847A | nonsyn | AGa | GCa | 1 | 1 | 1 | 24101-24103 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 847 | R847K | aGa | aAa | 629 | 629 | All | 0.00012 |
S | 847 | R847T | aGa | aCa | 263 | 263 | All | 0.00005 |
S | 847 | R847R | agA | agG | 155 | 169 | All | 0.00003 |
S | 847 | R847R | Aga | Cga | 13 | 169 | All | 0.000002 |
S | 847 | R847R | AgA | CgG | 1 | 169 | All | 0 |
S | 847 | R847K | aGa | aAa | 168 | 168 | B.1.617.2 | 0.000633 |
S | 847 | R847K | aGa | aAa | 164 | 164 | B.1.1.363 | 0.982036 |
S | 847 | R847I | aGa | aTa | 97 | 98 | All | 0.000019 |
S | 847 | R847I | aGA | aTC | 1 | 98 | All | 0 |
S | 847 | R847del | AGA | --- | 88 | 88 | All | 0.000017 |
S | 847 | R847T | aGa | aCa | 77 | 77 | B.1.1.7 | 0.000069 |
S | 847 | R847K | aGa | aAa | 72 | 72 | AY.61 | 0.007544 |
S | 847 | R847K | aGa | aAa | 52 | 52 | B.1.1.7 | 0.000047 |
S | 847 | R847del | AGA | --- | 31 | 31 | B.1.1.7 | 0.000028 |
S | 847 | R847K | aGa | aAa | 27 | 27 | B.1.160 | 0.000842 |
S | 847 | R847R | agA | agG | 26 | 26 | B.1.177 | 0.000342 |
S | 847 | R847T | aGa | aCa | 25 | 25 | AY.4 | 0.000039 |
S | 847 | R847K | aGa | aAa | 24 | 24 | AY.75.1 | 0.004327 |
S | 847 | R847I | aGa | aTa | 22 | 22 | B.1.1.7 | 0.00002 |
S | 847 | R847S | agA | agT | 13 | 21 | All | 0.000002 |
S | 847 | R847S | agA | agC | 7 | 21 | All | 0.000001 |
S | 847 | R847S | AGa | TCa | 1 | 21 | All | 0 |
S | 847 | R847R | agA | agG | 18 | 20 | B.1.1.7 | 0.000016 |
S | 847 | R847R | Aga | Cga | 2 | 20 | B.1.1.7 | 0.000002 |
S | 847 | R847K | aGa | aAa | 19 | 19 | AY.103 | 0.000118 |
S | 847 | R847T | aGa | aCa | 17 | 17 | D.2 | 0.001276 |
S | 847 | R847G | Aga | Gga | 14 | 15 | All | 0.000003 |
S | 847 | R847G | AgA | GgG | 1 | 15 | All | 0 |
S | 847 | R847R | agA | agG | 8 | 15 | B.1 | 0.000073 |
S | 847 | R847R | Aga | Cga | 7 | 15 | B.1 | 0.000064 |
S | 847 | R847R | agA | agG | 14 | 14 | B.1.236 | 0.028747 |
S | 847 | R847R | agA | agG | 12 | 13 | AY.4 | 0.000019 |
S | 847 | R847R | Aga | Cga | 1 | 13 | AY.4 | 0.000002 |
S | 847 | R847S | agA | agT | 11 | 12 | B.1.1.7 | 0.00001 |
S | 847 | R847S | AGa | TCa | 1 | 12 | B.1.1.7 | 0.000001 |
S | 847 | R847I | aGa | aTa | 11 | 11 | AY.4 | 0.000017 |
S | 847 | R847K | aGa | aAa | 11 | 11 | B.1.1 | 0.0002 |
S | 847 | R847T | aGa | aCa | 10 | 10 | B.1.617.2 | 0.000038 |
S | 847 | R847R | agA | agG | 9 | 10 | B.1.617.2 | 0.000034 |
S | 847 | R847R | Aga | Cga | 1 | 10 | B.1.617.2 | 0.000004 |
S | 847 | R847T | aGa | aCa | 8 | 8 | AY.103 | 0.00005 |
S | 847 | R847K | aGa | aAa | 8 | 8 | AY.71 | 0.0038 |
S | 847 | R847K | aGa | aAa | 7 | 7 | A.28 | 0.018519 |
S | 847 | R847K | aGa | aAa | 7 | 7 | AY.20 | 0.000272 |
S | 847 | R847T | aGa | aCa | 7 | 7 | AY.25 | 0.000042 |
S | 847 | R847I | aGa | aTa | 7 | 7 | AY.3 | 0.00007 |
S | 847 | R847T | aGa | aCa | 7 | 7 | B.1 | 0.000064 |
S | 847 | R847T | aGa | aCa | 7 | 7 | B.1.2 | 0.000062 |
S | 847 | R847R | agA | agG | 7 | 7 | B.1.637 | 0.000512 |
S | 847 | R847I | aGa | aTa | 6 | 7 | D.2 | 0.00045 |
S | 847 | R847I | aGA | aTC | 1 | 7 | D.2 | 0.000075 |
S | 847 | R847K | aGa | aAa | 6 | 6 | AY.4 | 0.000009 |
S | 847 | R847K | aGa | aAa | 6 | 6 | B.1 | 0.000055 |
S | 847 | R847T | aGa | aCa | 6 | 6 | B.1.177 | 0.000079 |
S | 847 | R847del1 | agA | ag- | 4 | 5 | All | 0.000001 |
S | 847 | R847del1 | Aga | -ga | 1 | 5 | All | 0 |
S | 847 | R847T | aGa | aCa | 5 | 5 | AY.43 | 0.000022 |
S | 847 | R847K | aGa | aAa | 5 | 5 | AY.43 | 0.000022 |
S | 847 | R847T | aGa | aCa | 5 | 5 | AY.44 | 0.00003 |
S | 847 | R847I | aGa | aTa | 5 | 5 | B.1 | 0.000046 |
S | 847 | R847I | aGa | aTa | 5 | 5 | B.1.1 | 0.000091 |
S | 847 | R847del | AGA | --- | 5 | 5 | B.1.177 | 0.000066 |
S | 847 | R847R | agA | agG | 5 | 5 | P.1 | 0.000079 |
S | 847 | R847del2 | aGA | a-- | 4 | 4 | All | 0.000001 |
S | 847 | R847T | aGa | aCa | 4 | 4 | AY.102 | 0.000106 |
S | 847 | R847T | aGa | aCa | 4 | 4 | AY.29 | 0.000063 |
S | 847 | R847K | aGa | aAa | 4 | 4 | AY.34 | 0.000388 |
S | 847 | R847del | AGA | --- | 4 | 4 | AY.4 | 0.000006 |
S | 847 | R847T | aGa | aCa | 4 | 4 | AY.42 | 0.000161 |
S | 847 | R847R | agA | agG | 3 | 4 | AY.43 | 0.000013 |
S | 847 | R847R | AgA | CgG | 1 | 4 | AY.43 | 0.000004 |
S | 847 | R847R | agA | agG | 4 | 4 | AY.47 | 0.000124 |
S | 847 | R847T | aGa | aCa | 4 | 4 | AY.6 | 0.000165 |
S | 847 | R847T | aGa | aCa | 4 | 4 | B.1.1 | 0.000073 |
S | 847 | R847T | aGa | aCa | 4 | 4 | B.1.1.519 | 0.000159 |
S | 847 | R847R | agA | agG | 4 | 4 | B.1.596 | 0.000349 |
S | 847 | R847K | aGa | aAa | 3 | 3 | AY.102 | 0.00008 |
S | 847 | R847R | agA | agG | 2 | 3 | AY.103 | 0.000012 |
S | 847 | R847R | Aga | Cga | 1 | 3 | AY.103 | 0.000006 |
S | 847 | R847K | aGa | aAa | 3 | 3 | AY.114 | 0.000693 |
S | 847 | R847K | aGa | aAa | 3 | 3 | AY.120 | 0.000112 |
S | 847 | R847R | agA | agG | 3 | 3 | AY.3 | 0.00003 |
S | 847 | R847T | aGa | aCa | 3 | 3 | AY.3 | 0.00003 |
S | 847 | R847del | AGA | --- | 3 | 3 | AY.4.5 | 0.000322 |
S | 847 | R847del | AGA | --- | 3 | 3 | AY.43 | 0.000013 |
S | 847 | R847I | aGa | aTa | 3 | 3 | AY.43 | 0.000013 |
S | 847 | R847R | agA | agG | 3 | 3 | AY.44 | 0.000018 |
S | 847 | R847R | agA | agG | 3 | 3 | B.1.1.486 | 0.004732 |
S | 847 | R847R | agA | agG | 3 | 3 | B.1.1.519 | 0.000119 |
S | 847 | R847G | Aga | Gga | 3 | 3 | B.1.1.7 | 0.000003 |
S | 847 | R847del2 | aGA | a-- | 3 | 3 | B.1.1.7 | 0.000003 |
S | 847 | R847del | AGA | --- | 3 | 3 | B.1.177.54 | 0.001819 |
S | 847 | R847R | agA | agG | 3 | 3 | B.1.2 | 0.000026 |
S | 847 | R847K | aGa | aAa | 3 | 3 | B.1.2 | 0.000026 |
S | 847 | R847R | agA | agG | 3 | 3 | B.1.234 | 0.000396 |
S | 847 | R847R | agA | agG | 3 | 3 | B.1.319 | 0.009146 |
S | 847 | R847T | aGa | aCa | 3 | 3 | B.1.488 | 0.6 |
S | 847 | R847K | aGa | aAa | 3 | 3 | B.1.526 | 0.000071 |
S | 847 | R847I | aGa | aTa | 3 | 3 | B.1.617.2 | 0.000011 |
S | 847 | R847del | AGA | --- | 2 | 2 | 0.111111 | |
S | 847 | R847X | Aga | Tga | 2 | 2 | All | 0 |
S | 847 | R847R | agA | agG | 2 | 2 | AY.100 | 0.000092 |
S | 847 | R847I | aGa | aTa | 2 | 2 | AY.102 | 0.000053 |
S | 847 | R847R | agA | agG | 2 | 2 | AY.117 | 0.000169 |
S | 847 | R847K | aGa | aAa | 2 | 2 | AY.118 | 0.000125 |
S | 847 | R847T | aGa | aCa | 2 | 2 | AY.119 | 0.000071 |
S | 847 | R847K | aGa | aAa | 2 | 2 | AY.23 | 0.000139 |
S | 847 | R847K | aGa | aAa | 2 | 2 | AY.32 | 0.001065 |
S | 847 | R847K | aGa | aAa | 2 | 2 | AY.39.1 | 0.000079 |
S | 847 | R847G | Aga | Gga | 2 | 2 | AY.4 | 0.000003 |
S | 847 | R847I | aGa | aTa | 2 | 2 | AY.4.2 | 0.000043 |
S | 847 | R847G | Aga | Gga | 2 | 2 | AY.43 | 0.000009 |
S | 847 | R847I | aGa | aTa | 2 | 2 | AY.44 | 0.000012 |
S | 847 | R847del | AGA | --- | 2 | 2 | AY.46.2 | 0.001271 |
S | 847 | R847T | aGa | aCa | 2 | 2 | AY.5 | 0.000041 |
S | 847 | R847T | aGa | aCa | 2 | 2 | AY.98 | 0.000158 |
S | 847 | R847del | AGA | --- | 2 | 2 | B.1 | 0.000018 |
S | 847 | R847del | AGA | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 847 | R847K | aGa | aAa | 2 | 2 | B.1.1.148 | 0.017544 |
S | 847 | R847del | AGA | --- | 2 | 2 | B.1.1.236 | 0.013793 |
S | 847 | R847S | agA | agC | 2 | 2 | B.1.1.25 | 0.001137 |
S | 847 | R847T | aGa | aCa | 2 | 2 | B.1.1.284 | 0.000215 |
S | 847 | R847T | aGa | aCa | 2 | 2 | B.1.1.331 | 0.023256 |
S | 847 | R847G | Aga | Gga | 2 | 2 | B.1.177 | 0.000026 |
S | 847 | R847K | aGa | aAa | 2 | 2 | B.1.177 | 0.000026 |
S | 847 | R847del | AGA | --- | 2 | 2 | B.1.177.4 | 0.000422 |
S | 847 | R847T | aGa | aCa | 2 | 2 | B.1.177.55 | 0.004662 |
S | 847 | R847T | aGa | aCa | 2 | 2 | B.1.179 | 0.007519 |
S | 847 | R847I | aGa | aTa | 2 | 2 | B.1.351 | 0.000059 |
S | 847 | R847T | aGa | aCa | 2 | 2 | B.1.351 | 0.000059 |
S | 847 | R847I | aGa | aTa | 2 | 2 | B.1.427 | 0.000101 |
S | 847 | R847K | aGa | aAa | 2 | 2 | B.1.429 | 0.000047 |
S | 847 | R847T | aGa | aCa | 2 | 2 | B.1.526 | 0.000047 |
S | 847 | R847del | AGA | --- | 1 | 1 | A | 0.000387 |
S | 847 | R847S | agA | agC | 1 | 1 | A.1 | 0.000282 |
S | 847 | R847K | aGa | aAa | 1 | 1 | A.1 | 0.000282 |
S | 847 | R847T | aGa | aCa | 1 | 1 | A.23.1 | 0.000704 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AD.2 | 0.000219 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AD.2 | 0.000219 |
S | 847 | R847del | AGA | --- | 1 | 1 | AH.3 | 0.003802 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AL.1 | 0.012987 |
S | 847 | R847A | AGa | GCa | 1 | 1 | All | 0 |
S | 847 | R847M | aGA | aTG | 1 | 1 | All | 0 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AM.4 | 0.003571 |
S | 847 | R847K | aGa | aAa | 1 | 1 | AY.10 | 0.00053 |
S | 847 | R847R | agA | agG | 1 | 1 | AY.102 | 0.000027 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AY.103 | 0.000006 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.106 | 0.000335 |
S | 847 | R847K | aGa | aAa | 1 | 1 | AY.110 | 0.000113 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.110 | 0.000113 |
S | 847 | R847G | Aga | Gga | 1 | 1 | AY.117 | 0.000085 |
S | 847 | R847del | AGA | --- | 1 | 1 | AY.117 | 0.000085 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.118 | 0.000063 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AY.119 | 0.000035 |
S | 847 | R847R | agA | agG | 1 | 1 | AY.119 | 0.000035 |
S | 847 | R847del | AGA | --- | 1 | 1 | AY.120 | 0.000037 |
S | 847 | R847R | agA | agG | 1 | 1 | AY.20 | 0.000039 |
S | 847 | R847R | agA | agG | 1 | 1 | AY.23 | 0.00007 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.23 | 0.00007 |
S | 847 | R847S | agA | agC | 1 | 1 | AY.25 | 0.000006 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AY.25 | 0.000006 |
S | 847 | R847del | AGA | --- | 1 | 1 | AY.25 | 0.000006 |
S | 847 | R847K | aGa | aAa | 1 | 1 | AY.25 | 0.000006 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AY.26 | 0.000028 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AY.29 | 0.000016 |
S | 847 | R847K | aGa | aAa | 1 | 1 | AY.29 | 0.000016 |
S | 847 | R847R | agA | agG | 1 | 1 | AY.29.1 | 0.000221 |
S | 847 | R847M | aGA | aTG | 1 | 1 | AY.3 | 0.00001 |
S | 847 | R847del | AGA | --- | 1 | 1 | AY.3.1 | 0.000085 |
S | 847 | R847K | aGa | aAa | 1 | 1 | AY.33 | 0.000067 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.33 | 0.000067 |
S | 847 | R847del | AGA | --- | 1 | 1 | AY.36 | 0.000148 |
S | 847 | R847K | aGa | aAa | 1 | 1 | AY.39 | 0.000025 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AY.39 | 0.000025 |
S | 847 | R847R | agA | agG | 1 | 1 | AY.39 | 0.000025 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.39 | 0.000025 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.39.1 | 0.00004 |
S | 847 | R847del2 | aGA | a-- | 1 | 1 | AY.4 | 0.000002 |
S | 847 | R847S | agA | agC | 1 | 1 | AY.4 | 0.000002 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.4.2 | 0.000022 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 847 | R847del1 | Aga | -ga | 1 | 1 | AY.4.5 | 0.000107 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.40 | 0.000964 |
S | 847 | R847K | aGa | aAa | 1 | 1 | AY.42 | 0.00004 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AY.42 | 0.00004 |
S | 847 | R847X | Aga | Tga | 1 | 1 | AY.43 | 0.000004 |
S | 847 | R847del1 | agA | ag- | 1 | 1 | AY.43 | 0.000004 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AY.46 | 0.000104 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.46.1 | 0.001027 |
S | 847 | R847K | aGa | aAa | 1 | 1 | AY.46.4 | 0.000165 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.47 | 0.000031 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AY.5 | 0.000021 |
S | 847 | R847del | AGA | --- | 1 | 1 | AY.5 | 0.000021 |
S | 847 | R847K | aGa | aAa | 1 | 1 | AY.5.3 | 0.000337 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.54 | 0.000095 |
S | 847 | R847G | Aga | Gga | 1 | 1 | AY.55 | 0.000917 |
S | 847 | R847K | aGa | aAa | 1 | 1 | AY.67 | 0.000464 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AY.68 | 0.000274 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.7.2 | 0.000559 |
S | 847 | R847del | AGA | --- | 1 | 1 | AY.75 | 0.000056 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.81 | 0.001992 |
S | 847 | R847S | agA | agT | 1 | 1 | AY.9 | 0.000068 |
S | 847 | R847K | aGa | aAa | 1 | 1 | AY.92 | 0.000287 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AY.92 | 0.000287 |
S | 847 | R847T | aGa | aCa | 1 | 1 | AY.95 | 0.000761 |
S | 847 | R847R | agA | agG | 1 | 1 | AY.98.1 | 0.000048 |
S | 847 | R847del | AGA | --- | 1 | 1 | AY.98.1 | 0.000048 |
S | 847 | R847I | aGa | aTa | 1 | 1 | AY.98.1 | 0.000048 |
S | 847 | R847del | AGA | --- | 1 | 1 | AY.99.1 | 0.001553 |
S | 847 | R847R | agA | agG | 1 | 1 | AZ.2 | 0.000821 |
S | 847 | R847R | Aga | Cga | 1 | 1 | B | 0.000128 |
S | 847 | R847G | Aga | Gga | 1 | 1 | B.1 | 0.000009 |
S | 847 | R847R | agA | agG | 1 | 1 | B.1.1 | 0.000018 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.1.1 | 0.000327 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.1.157 | 0.000913 |
S | 847 | R847del | AGA | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.1.217 | 0.003636 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.1.222 | 0.000204 |
S | 847 | R847K | aGa | aAa | 1 | 1 | B.1.1.29 | 0.010309 |
S | 847 | R847R | agA | agG | 1 | 1 | B.1.1.304 | 0.002809 |
S | 847 | R847del | AGA | --- | 1 | 1 | B.1.1.312 | 0.001912 |
S | 847 | R847K | aGa | aAa | 1 | 1 | B.1.1.316 | 0.000925 |
S | 847 | R847I | aGa | aTa | 1 | 1 | B.1.1.37 | 0.000193 |
S | 847 | R847R | agA | agG | 1 | 1 | B.1.1.63 | 0.000386 |
S | 847 | R847X | Aga | Tga | 1 | 1 | B.1.1.7 | 0.000001 |
S | 847 | R847A | AGa | GCa | 1 | 1 | B.1.1.7 | 0.000001 |
S | 847 | R847del1 | agA | ag- | 1 | 1 | B.1.1.7 | 0.000001 |
S | 847 | R847K | aGa | aAa | 1 | 1 | B.1.131 | 0.008772 |
S | 847 | R847R | agA | agG | 1 | 1 | B.1.158 | 0.02381 |
S | 847 | R847R | agA | agG | 1 | 1 | B.1.160 | 0.000031 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.160.8 | 0.001289 |
S | 847 | R847S | agA | agC | 1 | 1 | B.1.177 | 0.000013 |
S | 847 | R847del | AGA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 847 | R847del | AGA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 847 | R847R | agA | agG | 1 | 1 | B.1.177.19 | 0.001431 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.177.4 | 0.000211 |
S | 847 | R847I | aGa | aTa | 1 | 1 | B.1.177.56 | 0.000668 |
S | 847 | R847del | AGA | --- | 1 | 1 | B.1.177.58 | 0.001332 |
S | 847 | R847I | aGa | aTa | 1 | 1 | B.1.177.60 | 0.000218 |
S | 847 | R847del | AGA | --- | 1 | 1 | B.1.177.60 | 0.000218 |
S | 847 | R847del | AGA | --- | 1 | 1 | B.1.177.63 | 0.002703 |
S | 847 | R847I | aGa | aTa | 1 | 1 | B.1.177.65 | 0.000665 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.177.73 | 0.000566 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.177.86 | 0.000183 |
S | 847 | R847del1 | agA | ag- | 1 | 1 | B.1.177.87 | 0.000728 |
S | 847 | R847del | AGA | --- | 1 | 1 | B.1.179 | 0.003759 |
S | 847 | R847G | Aga | Gga | 1 | 1 | B.1.2 | 0.000009 |
S | 847 | R847I | aGa | aTa | 1 | 1 | B.1.2 | 0.000009 |
S | 847 | R847del | AGA | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 847 | R847K | aGa | aAa | 1 | 1 | B.1.221 | 0.000071 |
S | 847 | R847I | aGa | aTa | 1 | 1 | B.1.221 | 0.000071 |
S | 847 | R847G | AgA | GgG | 1 | 1 | B.1.221 | 0.000071 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.240 | 0.000216 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.243 | 0.00007 |
S | 847 | R847R | agA | agG | 1 | 1 | B.1.243 | 0.00007 |
S | 847 | R847del | AGA | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.270 | 0.005618 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.311 | 0.000275 |
S | 847 | R847K | aGa | aAa | 1 | 1 | B.1.333 | 0.010526 |
S | 847 | R847I | aGa | aTa | 1 | 1 | B.1.340 | 0.004292 |
S | 847 | R847R | agA | agG | 1 | 1 | B.1.351 | 0.00003 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.36 | 0.000146 |
S | 847 | R847del | AGA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 847 | R847K | aGa | aAa | 1 | 1 | B.1.36.18 | 0.00042 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.36.29 | 0.000517 |
S | 847 | R847I | aGa | aTa | 1 | 1 | B.1.36.31 | 0.001751 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.369 | 0.000285 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.395 | 0.007042 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.427 | 0.00005 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.429 | 0.000024 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.438.1 | 0.000107 |
S | 847 | R847I | aGa | aTa | 1 | 1 | B.1.526 | 0.000024 |
S | 847 | R847R | agA | agG | 1 | 1 | B.1.617.1 | 0.000129 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.617.1 | 0.000129 |
S | 847 | R847del | AGA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 847 | R847del1 | agA | ag- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 847 | R847S | agA | agT | 1 | 1 | B.1.617.2 | 0.000004 |
S | 847 | R847R | agA | agG | 1 | 1 | B.1.621 | 0.000089 |
S | 847 | R847T | aGa | aCa | 1 | 1 | B.1.637 | 0.000073 |
S | 847 | R847K | aGa | aAa | 1 | 1 | C.37 | 0.000116 |
S | 847 | R847S | agA | agC | 1 | 1 | D.2 | 0.000075 |
S | 847 | R847K | aGa | aAa | 1 | 1 | D.2 | 0.000075 |
S | 847 | R847del | AGA | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 847 | R847I | aGa | aTa | 1 | 1 | P.1.14 | 0.000048 |
S | 847 | R847T | aGa | aCa | 1 | 1 | P.1.14 | 0.000048 |
S | 847 | R847G | Aga | Gga | 1 | 1 | P.1.14 | 0.000048 |
S | 847 | R847del | AGA | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 847 | R847T | aGa | aCa | 1 | 1 | Q.1 | 0.000126 |
S | 847 | R847del | AGA | --- | 1 | 1 | Q.2 | 0.000613 |
S | 847 | R847del | AGA | --- | 1 | 1 | U.3 | 0.003861 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|