CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 847

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S847R847KnonsynaGaaAa629629124101-24103
S847R847TnonsynaGaaCa263263124101-24103
S847R847RsynagAagG1691550.9171624101-24103
S847R847RsynAgaCga169130.076923124101-24103
S847R847RsynAgACgG16910.0059171624101-24103
S847R847InonsynaGaaTa98970.98979624101-24103
S847R847InonsynaGAaTC9810.010204124101-24103
S847R847deldelAGA---8888124101-24103
S847R847SnonsynagAagT21130.61904824101-24103
S847R847SnonsynagAagC2170.33333324101-24103
S847R847SnonsynAGaTCa2110.04761924101-24103
S847R847GnonsynAgaGga15140.93333324101-24103
S847R847GnonsynAgAGgG1510.066666724101-24103
S847R847del1delagAag-540.824101-24103
S847R847del1delAga-ga510.224101-24103
S847R847del2delaGAa--44124101-24103
S847R847XnonsynAgaTga22124101-24103
S847R847MnonsynaGAaTG11124101-24103
S847R847AnonsynAGaGCa11124101-24103

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S847R847KaGaaAa629629All0.00012
S847R847TaGaaCa263263All0.00005
S847R847RagAagG155169All0.00003
S847R847RAgaCga13169All0.000002
S847R847RAgACgG1169All0
S847R847KaGaaAa168168B.1.617.20.000633
S847R847KaGaaAa164164B.1.1.3630.982036
S847R847IaGaaTa9798All0.000019
S847R847IaGAaTC198All0
S847R847delAGA---8888All0.000017
S847R847TaGaaCa7777B.1.1.70.000069
S847R847KaGaaAa7272AY.610.007544
S847R847KaGaaAa5252B.1.1.70.000047
S847R847delAGA---3131B.1.1.70.000028
S847R847KaGaaAa2727B.1.1600.000842
S847R847RagAagG2626B.1.1770.000342
S847R847TaGaaCa2525AY.40.000039
S847R847KaGaaAa2424AY.75.10.004327
S847R847IaGaaTa2222B.1.1.70.00002
S847R847SagAagT1321All0.000002
S847R847SagAagC721All0.000001
S847R847SAGaTCa121All0
S847R847RagAagG1820B.1.1.70.000016
S847R847RAgaCga220B.1.1.70.000002
S847R847KaGaaAa1919AY.1030.000118
S847R847TaGaaCa1717D.20.001276
S847R847GAgaGga1415All0.000003
S847R847GAgAGgG115All0
S847R847RagAagG815B.10.000073
S847R847RAgaCga715B.10.000064
S847R847RagAagG1414B.1.2360.028747
S847R847RagAagG1213AY.40.000019
S847R847RAgaCga113AY.40.000002
S847R847SagAagT1112B.1.1.70.00001
S847R847SAGaTCa112B.1.1.70.000001
S847R847IaGaaTa1111AY.40.000017
S847R847KaGaaAa1111B.1.10.0002
S847R847TaGaaCa1010B.1.617.20.000038
S847R847RagAagG910B.1.617.20.000034
S847R847RAgaCga110B.1.617.20.000004
S847R847TaGaaCa88AY.1030.00005
S847R847KaGaaAa88AY.710.0038
S847R847KaGaaAa77A.280.018519
S847R847KaGaaAa77AY.200.000272
S847R847TaGaaCa77AY.250.000042
S847R847IaGaaTa77AY.30.00007
S847R847TaGaaCa77B.10.000064
S847R847TaGaaCa77B.1.20.000062
S847R847RagAagG77B.1.6370.000512
S847R847IaGaaTa67D.20.00045
S847R847IaGAaTC17D.20.000075
S847R847KaGaaAa66AY.40.000009
S847R847KaGaaAa66B.10.000055
S847R847TaGaaCa66B.1.1770.000079
S847R847del1agAag-45All0.000001
S847R847del1Aga-ga15All0
S847R847TaGaaCa55AY.430.000022
S847R847KaGaaAa55AY.430.000022
S847R847TaGaaCa55AY.440.00003
S847R847IaGaaTa55B.10.000046
S847R847IaGaaTa55B.1.10.000091
S847R847delAGA---55B.1.1770.000066
S847R847RagAagG55P.10.000079
S847R847del2aGAa--44All0.000001
S847R847TaGaaCa44AY.1020.000106
S847R847TaGaaCa44AY.290.000063
S847R847KaGaaAa44AY.340.000388
S847R847delAGA---44AY.40.000006
S847R847TaGaaCa44AY.420.000161
S847R847RagAagG34AY.430.000013
S847R847RAgACgG14AY.430.000004
S847R847RagAagG44AY.470.000124
S847R847TaGaaCa44AY.60.000165
S847R847TaGaaCa44B.1.10.000073
S847R847TaGaaCa44B.1.1.5190.000159
S847R847RagAagG44B.1.5960.000349
S847R847KaGaaAa33AY.1020.00008
S847R847RagAagG23AY.1030.000012
S847R847RAgaCga13AY.1030.000006
S847R847KaGaaAa33AY.1140.000693
S847R847KaGaaAa33AY.1200.000112
S847R847RagAagG33AY.30.00003
S847R847TaGaaCa33AY.30.00003
S847R847delAGA---33AY.4.50.000322
S847R847delAGA---33AY.430.000013
S847R847IaGaaTa33AY.430.000013
S847R847RagAagG33AY.440.000018
S847R847RagAagG33B.1.1.4860.004732
S847R847RagAagG33B.1.1.5190.000119
S847R847GAgaGga33B.1.1.70.000003
S847R847del2aGAa--33B.1.1.70.000003
S847R847delAGA---33B.1.177.540.001819
S847R847RagAagG33B.1.20.000026
S847R847KaGaaAa33B.1.20.000026
S847R847RagAagG33B.1.2340.000396
S847R847RagAagG33B.1.3190.009146
S847R847TaGaaCa33B.1.4880.6
S847R847KaGaaAa33B.1.5260.000071
S847R847IaGaaTa33B.1.617.20.000011
S847R847delAGA---220.111111
S847R847XAgaTga22All0
S847R847RagAagG22AY.1000.000092
S847R847IaGaaTa22AY.1020.000053
S847R847RagAagG22AY.1170.000169
S847R847KaGaaAa22AY.1180.000125
S847R847TaGaaCa22AY.1190.000071
S847R847KaGaaAa22AY.230.000139
S847R847KaGaaAa22AY.320.001065
S847R847KaGaaAa22AY.39.10.000079
S847R847GAgaGga22AY.40.000003
S847R847IaGaaTa22AY.4.20.000043
S847R847GAgaGga22AY.430.000009
S847R847IaGaaTa22AY.440.000012
S847R847delAGA---22AY.46.20.001271
S847R847TaGaaCa22AY.50.000041
S847R847TaGaaCa22AY.980.000158
S847R847delAGA---22B.10.000018
S847R847delAGA---22B.1.10.000036
S847R847KaGaaAa22B.1.1.1480.017544
S847R847delAGA---22B.1.1.2360.013793
S847R847SagAagC22B.1.1.250.001137
S847R847TaGaaCa22B.1.1.2840.000215
S847R847TaGaaCa22B.1.1.3310.023256
S847R847GAgaGga22B.1.1770.000026
S847R847KaGaaAa22B.1.1770.000026
S847R847delAGA---22B.1.177.40.000422
S847R847TaGaaCa22B.1.177.550.004662
S847R847TaGaaCa22B.1.1790.007519
S847R847IaGaaTa22B.1.3510.000059
S847R847TaGaaCa22B.1.3510.000059
S847R847IaGaaTa22B.1.4270.000101
S847R847KaGaaAa22B.1.4290.000047
S847R847TaGaaCa22B.1.5260.000047
S847R847delAGA---11A0.000387
S847R847SagAagC11A.10.000282
S847R847KaGaaAa11A.10.000282
S847R847TaGaaCa11A.23.10.000704
S847R847TaGaaCa11AD.20.000219
S847R847IaGaaTa11AD.20.000219
S847R847delAGA---11AH.30.003802
S847R847IaGaaTa11AL.10.012987
S847R847AAGaGCa11All0
S847R847MaGAaTG11All0
S847R847IaGaaTa11AM.40.003571
S847R847KaGaaAa11AY.100.00053
S847R847RagAagG11AY.1020.000027
S847R847IaGaaTa11AY.1030.000006
S847R847TaGaaCa11AY.1060.000335
S847R847KaGaaAa11AY.1100.000113
S847R847TaGaaCa11AY.1100.000113
S847R847GAgaGga11AY.1170.000085
S847R847delAGA---11AY.1170.000085
S847R847TaGaaCa11AY.1180.000063
S847R847IaGaaTa11AY.1190.000035
S847R847RagAagG11AY.1190.000035
S847R847delAGA---11AY.1200.000037
S847R847RagAagG11AY.200.000039
S847R847RagAagG11AY.230.00007
S847R847TaGaaCa11AY.230.00007
S847R847SagAagC11AY.250.000006
S847R847IaGaaTa11AY.250.000006
S847R847delAGA---11AY.250.000006
S847R847KaGaaAa11AY.250.000006
S847R847IaGaaTa11AY.260.000028
S847R847IaGaaTa11AY.290.000016
S847R847KaGaaAa11AY.290.000016
S847R847RagAagG11AY.29.10.000221
S847R847MaGAaTG11AY.30.00001
S847R847delAGA---11AY.3.10.000085
S847R847KaGaaAa11AY.330.000067
S847R847TaGaaCa11AY.330.000067
S847R847delAGA---11AY.360.000148
S847R847KaGaaAa11AY.390.000025
S847R847IaGaaTa11AY.390.000025
S847R847RagAagG11AY.390.000025
S847R847TaGaaCa11AY.390.000025
S847R847TaGaaCa11AY.39.10.00004
S847R847del2aGAa--11AY.40.000002
S847R847SagAagC11AY.40.000002
S847R847TaGaaCa11AY.4.20.000022
S847R847TaGaaCa11AY.4.2.10.000149
S847R847del1Aga-ga11AY.4.50.000107
S847R847TaGaaCa11AY.400.000964
S847R847KaGaaAa11AY.420.00004
S847R847IaGaaTa11AY.420.00004
S847R847XAgaTga11AY.430.000004
S847R847del1agAag-11AY.430.000004
S847R847IaGaaTa11AY.460.000104
S847R847TaGaaCa11AY.46.10.001027
S847R847KaGaaAa11AY.46.40.000165
S847R847TaGaaCa11AY.470.000031
S847R847IaGaaTa11AY.50.000021
S847R847delAGA---11AY.50.000021
S847R847KaGaaAa11AY.5.30.000337
S847R847TaGaaCa11AY.540.000095
S847R847GAgaGga11AY.550.000917
S847R847KaGaaAa11AY.670.000464
S847R847IaGaaTa11AY.680.000274
S847R847TaGaaCa11AY.7.20.000559
S847R847delAGA---11AY.750.000056
S847R847TaGaaCa11AY.810.001992
S847R847SagAagT11AY.90.000068
S847R847KaGaaAa11AY.920.000287
S847R847IaGaaTa11AY.920.000287
S847R847TaGaaCa11AY.950.000761
S847R847RagAagG11AY.98.10.000048
S847R847delAGA---11AY.98.10.000048
S847R847IaGaaTa11AY.98.10.000048
S847R847delAGA---11AY.99.10.001553
S847R847RagAagG11AZ.20.000821
S847R847RAgaCga11B0.000128
S847R847GAgaGga11B.10.000009
S847R847RagAagG11B.1.10.000018
S847R847TaGaaCa11B.1.1.10.000327
S847R847TaGaaCa11B.1.1.1570.000913
S847R847delAGA---11B.1.1.1590.004673
S847R847TaGaaCa11B.1.1.2170.003636
S847R847TaGaaCa11B.1.1.2220.000204
S847R847KaGaaAa11B.1.1.290.010309
S847R847RagAagG11B.1.1.3040.002809
S847R847delAGA---11B.1.1.3120.001912
S847R847KaGaaAa11B.1.1.3160.000925
S847R847IaGaaTa11B.1.1.370.000193
S847R847RagAagG11B.1.1.630.000386
S847R847XAgaTga11B.1.1.70.000001
S847R847AAGaGCa11B.1.1.70.000001
S847R847del1agAag-11B.1.1.70.000001
S847R847KaGaaAa11B.1.1310.008772
S847R847RagAagG11B.1.1580.02381
S847R847RagAagG11B.1.1600.000031
S847R847TaGaaCa11B.1.160.80.001289
S847R847SagAagC11B.1.1770.000013
S847R847delAGA---11B.1.177.170.000821
S847R847delAGA---11B.1.177.180.00116
S847R847RagAagG11B.1.177.190.001431
S847R847TaGaaCa11B.1.177.40.000211
S847R847IaGaaTa11B.1.177.560.000668
S847R847delAGA---11B.1.177.580.001332
S847R847IaGaaTa11B.1.177.600.000218
S847R847delAGA---11B.1.177.600.000218
S847R847delAGA---11B.1.177.630.002703
S847R847IaGaaTa11B.1.177.650.000665
S847R847TaGaaCa11B.1.177.730.000566
S847R847TaGaaCa11B.1.177.860.000183
S847R847del1agAag-11B.1.177.870.000728
S847R847delAGA---11B.1.1790.003759
S847R847GAgaGga11B.1.20.000009
S847R847IaGaaTa11B.1.20.000009
S847R847delAGA---11B.1.20.000009
S847R847KaGaaAa11B.1.2210.000071
S847R847IaGaaTa11B.1.2210.000071
S847R847GAgAGgG11B.1.2210.000071
S847R847TaGaaCa11B.1.2400.000216
S847R847TaGaaCa11B.1.2430.00007
S847R847RagAagG11B.1.2430.00007
S847R847delAGA---11B.1.2580.000067
S847R847TaGaaCa11B.1.2700.005618
S847R847TaGaaCa11B.1.3110.000275
S847R847KaGaaAa11B.1.3330.010526
S847R847IaGaaTa11B.1.3400.004292
S847R847RagAagG11B.1.3510.00003
S847R847TaGaaCa11B.1.360.000146
S847R847delAGA---11B.1.36.180.00042
S847R847KaGaaAa11B.1.36.180.00042
S847R847TaGaaCa11B.1.36.290.000517
S847R847IaGaaTa11B.1.36.310.001751
S847R847TaGaaCa11B.1.3690.000285
S847R847TaGaaCa11B.1.3950.007042
S847R847TaGaaCa11B.1.4270.00005
S847R847TaGaaCa11B.1.4290.000024
S847R847TaGaaCa11B.1.438.10.000107
S847R847IaGaaTa11B.1.5260.000024
S847R847RagAagG11B.1.617.10.000129
S847R847TaGaaCa11B.1.617.10.000129
S847R847delAGA---11B.1.617.20.000004
S847R847del1agAag-11B.1.617.20.000004
S847R847SagAagT11B.1.617.20.000004
S847R847RagAagG11B.1.6210.000089
S847R847TaGaaCa11B.1.6370.000073
S847R847KaGaaAa11C.370.000116
S847R847SagAagC11D.20.000075
S847R847KaGaaAa11D.20.000075
S847R847delAGA---11P.1.130.000898
S847R847IaGaaTa11P.1.140.000048
S847R847TaGaaCa11P.1.140.000048
S847R847GAgaGga11P.1.140.000048
S847R847delAGA---11P.1.150.000232
S847R847TaGaaCa11Q.10.000126
S847R847delAGA---11Q.20.000613
S847R847delAGA---11U.30.003861