CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 846 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S846A846VnonsyngCtgTt293729340.99897924098-24100

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S846A846VgCtgTt29342937All0.000561
S846A846VgCtgTt667667AY.3.10.056868
S846A846VgCtgTt408408B.1.1.70.000365
S846A846VgCtgTt198198AY.40.000308
S846A846VgCtgTt171171AY.250.001029
S846A846VgCtgTt106106B.1.4290.002494
S846A846VgCtgTt9898B.1.617.20.000369
S846A846VgCtgTt9494B.1.1.751
S846A846VgCtgTt8181AY.430.000359
S846A846VgCtgTt7780B.1.20.000678
S846A846VgCtgTt7373AY.1030.000453
S846A846VgCtgTt6060B.1.2210.004262
S846A846VgCtgTt5757B.1.1.4590.876923
S846A846VgCtgTt5454B.1.221.30.045
S846A846VgCtgTt5252AY.440.000317
S846A846VgCtgTt4444B.1.1770.000579
S846A846VgCtgTt4242B.1.10.000762
S846A846VgCtgTt3131AY.30.000308
S846A846VgCtgTt3131B.1.1.5190.001231
S846A846VgCtgTt3131B.1.177.20.140909
S846A846VgCtgTt2727AY.46.60.00195
S846A846VgCtgTt2727B.1.1600.000842
S846A846VgCtgTt2424B.10.00022
S846A846VgCtgTt1818B.1.2580.001198
S846A846VgCtgTt1414P.10.000221
S846A846VgCtgTt1313AY.1200.000483
S846A846VgCtgTt1111AY.1170.00093
S846A846VgCtgTt1111AY.200.000428
S846A846VgCtgTt1111AY.610.001153
S846A846VgCtgTt1010B.1.1.2140.000555
S846A846VgCtgTt1010B.1.1.2940.012658
S846A846VgCtgTt1010B.1.6370.000731
S846A846VgCtgTt88AY.50.000165
S846A846VgCtgTt88B.1.177.320.010796
S846A846VgCtgTt88B.1.3510.000238
S846A846VgCtgTt77AY.1000.000322
S846A846VgCtgTt77AY.390.000173
S846A846VgCtgTt77AY.4.20.000152
S846A846VgCtgTt77AY.60.000288
S846A846VgCtgTt66AY.1020.000159
S846A846VgCtgTt66AY.290.000095
S846A846VgCtgTt66AY.460.000624
S846A846VgCtgTt66B.1.2430.000418
S846A846VgCtgTt66B.1.5950.001566
S846A846VgCtgTt55AY.1130.000712
S846A846VgCtgTt55AY.1210.000677
S846A846VgCtgTt55AY.34.10.00255
S846A846VgCtgTt55AY.470.000156
S846A846VgCtgTt55AY.90.000338
S846A846VgCtgTt55B.1.1.3180.001509
S846A846VgCtgTt55B.1.3690.001426
S846A846VgCtgTt55B.1.5260.000118
S846A846VgCtgTt55B.1.5960.000436
S846A846VgCtgTt44AY.1160.001147
S846A846VgCtgTt44AY.260.000113
S846A846VgCtgTt44AY.330.000267
S846A846VgCtgTt44AY.340.000388
S846A846VgCtgTt44AY.420.000161
S846A846VgCtgTt44AY.9.20.000147
S846A846VgCtgTt44AY.960.008299
S846A846VgCtgTt44B.1.1.1610.014134
S846A846VgCtgTt44B.1.1.3170.001647
S846A846VgCtgTt44B.1.177.450.001525
S846A846VgCtgTt44B.1.3890.004008
S846A846VgCtgTt44R.10.00036
S846A846VgCtgTt33A.2.50.001497
S846A846VgCtgTt33AY.230.000209
S846A846VgCtgTt33AY.39.10.000119
S846A846VgCtgTt33AY.450.000365
S846A846VgCtgTt33AY.5.40.00083
S846A846VgCtgTt33AY.750.000168
S846A846VgCtgTt33AY.9.10.000251
S846A846VgCtgTt33AY.920.000862
S846A846VgCtgTt33B0.000383
S846A846VgCtgTt33B.1.1.100.003344
S846A846VgCtgTt33B.1.1620.015075
S846A846VgCtgTt33B.1.177.810.000568
S846A846VgCtgTt33B.1.2320.001612
S846A846VgCtgTt33B.1.2340.000396
S846A846VgCtgTt33B.1.3110.000824
S846A846VgCtgTt33B.1.36.170.001482
S846A846VgCtgTt33B.1.5750.00091
S846A846VgCtgTt33B.1.6120.007958
S846A846VgCtgTt33B.1.6180.012097
S846A846VgCtgTt33W.10.026087
S846A846VgCtgTt22A.280.005291
S846A846VgCtgTt22AY.1090.001479
S846A846VgCtgTt22AY.1110.000366
S846A846VgCtgTt22AY.1180.000125
S846A846VgCtgTt22AY.1190.000071
S846A846VgCtgTt22AY.140.000176
S846A846VgCtgTt22AY.4.50.000215
S846A846VgCtgTt22AY.46.20.001271
S846A846VgCtgTt22AY.590.001059
S846A846VgCtgTt22AY.690.000373
S846A846VgCtgTt22AY.740.000231
S846A846VgCtgTt22AY.840.000875
S846A846VgCtgTt22AY.980.000158
S846A846VgCtgTt22B.1.1.2840.000215
S846A846VgCtgTt22B.1.1.4340.000697
S846A846VgCtgTt22B.1.177.120.000303
S846A846VgCtgTt22B.1.177.570.000562
S846A846VgCtgTt22B.1.177.620.002384
S846A846VgCtgTt22B.1.177.650.001331
S846A846VgCtgTt22B.1.177.70.00033
S846A846VgCtgTt22B.1.177.860.000367
S846A846VgCtgTt22B.1.2240.05
S846A846VgCtgTt22B.1.2360.004107
S846A846VgCtgTt22B.1.258.170.000208
S846A846VgCtgTt22B.1.36.180.00084
S846A846VgCtgTt22B.1.4270.000101
S846A846VgCtgTt22B.1.4330.00639
S846A846VgCtgTt22B.1.466.20.000782
S846A846VgCtgTt22B.1.5610.000794
S846A846VgCtgTt22B.1.617.10.000258
S846A846VgCtgTt22C.370.000232
S846A846VgCtgTt22D.20.00015
S846A846VgCtgTt22N.50.003534
S846A846VgCtgTt22Q.10.000253
S846A846VgCtgTt110.055556
S846A846VgCtgTt11A0.000387
S846A846VgCtgTt11A.2.5.10.004808
S846A846VgCtgTt11A.210.00277
S846A846VgCtgTt11AE.80.000489
S846A846VgCtgTt11AM.20.111111
S846A846VgCtgTt11AM.40.003571
S846A846VgCtgTt11AY.120.10.000321
S846A846VgCtgTt11AY.120.20.001285
S846A846VgCtgTt11AY.240.000431
S846A846VgCtgTt11AY.270.000065
S846A846VgCtgTt11AY.320.000532
S846A846VgCtgTt11AY.540.000095
S846A846VgCtgTt11AY.550.000917
S846A846VgCtgTt11AY.580.000907
S846A846VgCtgTt11AY.600.000938
S846A846VgCtgTt11AY.680.000274
S846A846VgCtgTt11AY.710.000475
S846A846VgCtgTt11AY.790.001211
S846A846VgCtgTt11AY.870.000833
S846A846VgCtgTt11AY.880.000884
S846A846VgCtgTt11AY.98.10.000048
S846A846VgCtgTt11B.1.1.1170.009709
S846A846VgCtgTt11B.1.1.1660.033333
S846A846VgCtgTt11B.1.1.1700.001247
S846A846VgCtgTt11B.1.1.250.000569
S846A846VgCtgTt11B.1.1.2770.000759
S846A846VgCtgTt11B.1.1.3060.000438
S846A846VgCtgTt11B.1.1.3260.001761
S846A846VgCtgTt11B.1.1.3490.010309
S846A846VgCtgTt11B.1.1.3680.003086
S846A846VgCtgTt11B.1.1.370.000193
S846A846VgCtgTt11B.1.1.3910.008547
S846A846VgCtgTt11B.1.1.4060.006494
S846A846VgCtgTt11B.1.1.4160.000905
S846A846VgCtgTt11B.1.1.5280.004808
S846A846VgCtgTt11B.1.160.160.000929
S846A846VgCtgTt11B.1.177.100.000878
S846A846VgCtgTt11B.1.177.520.001757
S846A846VgCtgTt11B.1.177.530.002392
S846A846VgCtgTt11B.1.177.560.000668
S846A846VgCtgTt11B.1.30.002618
S846A846VgCtgTt11B.1.3240.001605
S846A846VgCtgTt11B.1.3290.000608
S846A846VgCtgTt11B.1.360.000146
S846A846VgCtgTt11B.1.36.260.002857
S846A846VgCtgTt11B.1.36.290.000517
S846A846VgCtgTt11B.1.3770.004566
S846A846VgCtgTt11B.1.3850.010638
S846A846VgCtgTt11B.1.4000.000429
S846A846VgCtgTt11B.1.4280.00102
S846A846VgCtgTt11B.1.438.10.000107
S846A846VgCtgTt11B.1.4690.00361
S846A846VgCtgTt11B.1.5250.000113
S846A846VgCtgTt11B.1.5380.008065
S846A846VgCtgTt11B.1.5510.00129
S846A846VgCtgTt11B.1.5640.000426
S846A846VgCtgTt11B.1.6210.000089
S846A846VgCtgTt11B.1.930.000934
S846A846VgCtgTt11B.120.00641
S846A846VgCtgTt11B.550.00295
S846A846VgCtgTt11C.360.000911
S846A846VgCtgTt11C.36.30.000567
S846A846VgCtgTt11D.50.004975
S846A846VgCtgTt11P.1.140.000048
S846A846VgCtgTt11P.1.20.001156
S846A846VgCtgTt11P.20.000187
S846A846VgCtgTt11P.60.003145
S846A846VgCtgTt11Q.30.000145
S846A846VgCtgTt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.