CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 846 & Codon = gGt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S846A846GnonsyngCtgGt759759124098-24100

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S846A846GgCtgGt759759All0.000145
S846A846GgCtgGt655655AY.290.010332
S846A846GgCtgGt3434B.1.20.000299
S846A846GgCtgGt2121B.1.1.70.000019
S846A846GgCtgGt1414B.1.1600.000437
S846A846GgCtgGt99AY.29.10.001985
S846A846GgCtgGt55AY.440.00003
S846A846GgCtgGt22AY.40.000003
S846A846GgCtgGt22B.10.000018
S846A846GgCtgGt22B.1.617.20.000008
S846A846GgCtgGt22P.1.170.000324
S846A846GgCtgGt110.055556
S846A846GgCtgGt11AY.1170.000085
S846A846GgCtgGt11AY.1200.000037
S846A846GgCtgGt11AY.250.000006
S846A846GgCtgGt11AY.430.000004
S846A846GgCtgGt11AY.980.000079
S846A846GgCtgGt11B.1.10.000018
S846A846GgCtgGt11B.1.1.1380.006061
S846A846GgCtgGt11B.1.1.3180.000302
S846A846GgCtgGt11B.1.2210.000071
S846A846GgCtgGt11B.1.2410.000812
S846A846GgCtgGt11B.1.3620.001541
S846A846GgCtgGt11B.1.4090.000781

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.