CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 846 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S846A846SnonsynGctTct182918270.99890624098-24100

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S846A846SGctTct18271829All0.000349
S846A846SGctTct277277AY.40.000431
S846A846SGctTct214214B.1.1.70.000192
S846A846SGctTct177177AY.250.001065
S846A846SGctTct153153AY.430.000678
S846A846SGctTct119119AY.4.20.002581
S846A846SGctTct9797B.1.617.20.000365
S846A846SGctTct9696B.1.177.170.078818
S846A846SGctTct5050B.280.163934
S846A846SGctTct4444AY.420.00177
S846A846SGctTct3939AY.1030.000242
S846A846SGctTct3535B.1.20.000308
S846A846SGctTct3232P.20.005972
S846A846SGctTct3131B.10.000284
S846A846SGctTct2424AY.1200.000892
S846A846SGctTct2323B.1.3510.000684
S846A846SGctTct2222AY.46.60.001589
S846A846SGctTct2121AY.390.000519
S846A846SGctTct1919AY.1170.001606
S846A846SGctTct1818AY.440.00011
S846A846SGctTct1616AY.290.000252
S846A846SGctTct1313AY.1020.000345
S846A846SGctTct1313AY.30.000129
S846A846SGctTct1313P.10.000205
S846A846SGctTct1212B.1.10.000218
S846A846SGctTct1212B.1.177.870.008734
S846A846SGctTct1111AY.46.50.002183
S846A846SGctTct1111B.1.1770.000145
S846A846SGctTct99AY.120.10.002889
S846A846SGctTct99AY.4.50.000967
S846A846SGctTct99AY.470.00028
S846A846SGctTct88AY.540.000763
S846A846SGctTct88B.1.5260.000188
S846A846SGctTct77AY.1210.000947
S846A846SGctTct77AY.50.000145
S846A846SGctTct77AY.610.000733
S846A846SGctTct77AY.98.10.000339
S846A846SGctTct66B.1.1.700.002046
S846A846SGctTct55AY.140.00044
S846A846SGctTct55AY.340.000485
S846A846SGctTct55B.1.1.280.001556
S846A846SGctTct55B.1.4290.000118
S846A846SGctTct240.111111
S846A846SGctTct44AD.20.000876
S846A846SGctTct44B.1.1.5190.000159
S846A846SGctTct44B.1.2230.011111
S846A846SGctTct44P.1.70.001277
S846A846SGctTct33AY.39.10.000119
S846A846SGctTct33AY.530.000863
S846A846SGctTct33AY.99.20.000276
S846A846SGctTct33B.1.2210.000213
S846A846SGctTct33B.1.360.000438
S846A846SGctTct22A.23.10.001408
S846A846SGctTct22AY.1110.000366
S846A846SGctTct22AY.1130.000285
S846A846SGctTct22AY.1190.000071
S846A846SGctTct22AY.230.000139
S846A846SGctTct22AY.320.001065
S846A846SGctTct22AY.350.000466
S846A846SGctTct22AY.360.000296
S846A846SGctTct22AY.380.000999
S846A846SGctTct22AY.4.40.000818
S846A846SGctTct22AY.46.40.000329
S846A846SGctTct22AY.5.40.000553
S846A846SGctTct22AY.600.001876
S846A846SGctTct22AY.7.10.000225
S846A846SGctTct22AY.90.000135
S846A846SGctTct22AY.9.20.000073
S846A846SGctTct22B.1.1.2140.000111
S846A846SGctTct22B.1.1.3060.000877
S846A846SGctTct22B.1.1700.008621
S846A846SGctTct22B.1.177.810.000379
S846A846SGctTct22B.1.221.30.001667
S846A846SGctTct22B.1.2400.000431
S846A846SGctTct22B.1.3110.000549
S846A846SGctTct22B.1.36.290.001035
S846A846SGctTct22B.1.4270.000101
S846A846SGctTct22B.1.6370.000146
S846A846SGctTct22Q.10.000253
S846A846SGctTct22Q.40.00091
S846A846SGctTct11A0.000387
S846A846SGctTct11A.40.012821
S846A846SGctTct11AY.1060.000335
S846A846SGctTct11AY.1140.000231
S846A846SGctTct11AY.1180.000063
S846A846SGctTct11AY.160.00038
S846A846SGctTct11AY.200.000039
S846A846SGctTct11AY.330.000067
S846A846SGctTct11AY.450.000122
S846A846SGctTct11AY.460.000104
S846A846SGctTct11AY.5.30.000337
S846A846SGctTct11AY.550.000917
S846A846SGctTct11AY.700.000209
S846A846SGctTct11AY.750.000056
S846A846SGctTct11AY.75.10.00018
S846A846SGctTct11AY.9.10.000084
S846A846SGctTct11AY.910.00073
S846A846SGctTct11AY.930.000273
S846A846SGctTct11AY.980.000079
S846A846SGctTct11B0.000128
S846A846SGctTct11B.1.1.1890.001513
S846A846SGctTct11B.1.1.3180.000302
S846A846SGctTct11B.1.1.3740.002375
S846A846SGctTct11B.1.1600.000031
S846A846SGctTct11B.1.177.320.00135
S846A846SGctTct11B.1.177.600.000218
S846A846SGctTct11B.1.177.70.000165
S846A846SGctTct11B.1.2340.000132
S846A846SGctTct11B.1.258.110.000396
S846A846SGctTct11B.1.258.170.000104
S846A846SGctTct11B.1.36.180.00042
S846A846SGctTct11B.1.36.190.009259
S846A846SGctTct11B.1.3620.001541
S846A846SGctTct11B.1.3690.000285
S846A846SGctTct11B.1.3960.000706
S846A846SGctTct11B.1.4040.001302
S846A846SGctTct11B.1.5040.03125
S846A846SGctTct11B.1.5170.000427
S846A846SGctTct11B.1.5650.00081
S846A846SGctTct11B.1.5750.000303
S846A846SGctTct11B.1.5960.000087
S846A846SGctTct11B.1.6200.000946
S846A846SGctTct11B.1.6210.000089
S846A846SGctTct11B.1.9.40.006135
S846A846SGctTct11C.370.000116
S846A846SGctTct11P.1.10.000318
S846A846SGctTct11P.1.170.000162
S846A846SGctTct11P.70.004367
S846A846SGctTct11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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