CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 846 | A846V | nonsyn | gCt | gTt | 2937 | 2934 | 0.998979 | 24098-24100 | |
S | 846 | A846V | nonsyn | gCT | gTC | 2937 | 3 | 0.00102145 | 24098-24100 | |
S | 846 | A846S | nonsyn | Gct | Tct | 1829 | 1827 | 0.998906 | 24098-24100 | |
S | 846 | A846S | nonsyn | GcT | TcG | 1829 | 1 | 0.000546747 | 24098-24100 | |
S | 846 | A846S | nonsyn | GcT | TcA | 1829 | 1 | 0.000546747 | 24098-24100 | |
S | 846 | A846G | nonsyn | gCt | gGt | 759 | 759 | 1 | 24098-24100 | |
S | 846 | A846A | syn | gcT | gcC | 286 | 226 | 0.79021 | 24098-24100 | |
S | 846 | A846A | syn | gcT | gcA | 286 | 54 | 0.188811 | 24098-24100 | |
S | 846 | A846A | syn | gcT | gcG | 286 | 6 | 0.020979 | 24098-24100 | |
S | 846 | A846T | nonsyn | Gct | Act | 113 | 112 | 0.99115 | 24098-24100 | |
S | 846 | A846T | nonsyn | GcT | AcC | 113 | 1 | 0.00884956 | 24098-24100 | |
S | 846 | A846del | del | GCT | --- | 80 | 80 | 1 | 24098-24100 | |
S | 846 | A846D | nonsyn | gCt | gAt | 14 | 14 | 1 | 24098-24100 | |
S | 846 | A846F | nonsyn | GCt | TTt | 8 | 8 | 1 | 24098-24100 | |
S | 846 | A846P | nonsyn | Gct | Cct | 8 | 7 | 0.875 | 24098-24100 | |
S | 846 | A846P | nonsyn | GcT | CcC | 8 | 1 | 0.125 | 24098-24100 | |
S | 846 | A846del2 | del | gCT | g-- | 6 | 3 | 0.5 | 24098-24100 | |
S | 846 | A846del2 | del | GCt | --t | 6 | 3 | 0.5 | 24098-24100 | |
S | 846 | A846del1 | del | gcT | gc- | 4 | 2 | 0.5 | 24098-24100 | |
S | 846 | A846del1 | del | Gct | -ct | 4 | 2 | 0.5 | 24098-24100 | |
S | 846 | A846I | nonsyn | GCt | ATt | 1 | 1 | 1 | 24098-24100 | |
S | 846 | A846N | nonsyn | GCt | AAt | 1 | 1 | 1 | 24098-24100 | |
S | 846 | A846Y | nonsyn | GCt | TAt | 1 | 1 | 1 | 24098-24100 | |
S | 846 | A846K | nonsyn | GCT | AAG | 1 | 1 | 1 | 24098-24100 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 846 | A846V | gCt | gTt | 2934 | 2937 | All | 0.000561 |
S | 846 | A846V | gCT | gTC | 3 | 2937 | All | 0.000001 |
S | 846 | A846S | Gct | Tct | 1827 | 1829 | All | 0.000349 |
S | 846 | A846S | GcT | TcG | 1 | 1829 | All | 0 |
S | 846 | A846S | GcT | TcA | 1 | 1829 | All | 0 |
S | 846 | A846G | gCt | gGt | 759 | 759 | All | 0.000145 |
S | 846 | A846V | gCt | gTt | 667 | 667 | AY.3.1 | 0.056868 |
S | 846 | A846G | gCt | gGt | 655 | 655 | AY.29 | 0.010332 |
S | 846 | A846V | gCt | gTt | 408 | 408 | B.1.1.7 | 0.000365 |
S | 846 | A846A | gcT | gcC | 226 | 286 | All | 0.000043 |
S | 846 | A846A | gcT | gcA | 54 | 286 | All | 0.00001 |
S | 846 | A846A | gcT | gcG | 6 | 286 | All | 0.000001 |
S | 846 | A846S | Gct | Tct | 277 | 277 | AY.4 | 0.000431 |
S | 846 | A846S | Gct | Tct | 214 | 214 | B.1.1.7 | 0.000192 |
S | 846 | A846V | gCt | gTt | 198 | 198 | AY.4 | 0.000308 |
S | 846 | A846S | Gct | Tct | 177 | 177 | AY.25 | 0.001065 |
S | 846 | A846V | gCt | gTt | 171 | 171 | AY.25 | 0.001029 |
S | 846 | A846S | Gct | Tct | 153 | 153 | AY.43 | 0.000678 |
S | 846 | A846S | Gct | Tct | 119 | 119 | AY.4.2 | 0.002581 |
S | 846 | A846T | Gct | Act | 112 | 113 | All | 0.000021 |
S | 846 | A846T | GcT | AcC | 1 | 113 | All | 0 |
S | 846 | A846V | gCt | gTt | 106 | 106 | B.1.429 | 0.002494 |
S | 846 | A846V | gCt | gTt | 98 | 98 | B.1.617.2 | 0.000369 |
S | 846 | A846S | Gct | Tct | 97 | 97 | B.1.617.2 | 0.000365 |
S | 846 | A846S | Gct | Tct | 96 | 96 | B.1.177.17 | 0.078818 |
S | 846 | A846V | gCt | gTt | 94 | 94 | B.1.1.75 | 1 |
S | 846 | A846V | gCt | gTt | 81 | 81 | AY.43 | 0.000359 |
S | 846 | A846del | GCT | --- | 80 | 80 | All | 0.000015 |
S | 846 | A846V | gCt | gTt | 77 | 80 | B.1.2 | 0.000678 |
S | 846 | A846V | gCT | gTC | 3 | 80 | B.1.2 | 0.000026 |
S | 846 | A846V | gCt | gTt | 73 | 73 | AY.103 | 0.000453 |
S | 846 | A846A | gcT | gcC | 61 | 61 | B.1.617.2 | 0.00023 |
S | 846 | A846V | gCt | gTt | 60 | 60 | B.1.221 | 0.004262 |
S | 846 | A846V | gCt | gTt | 57 | 57 | B.1.1.459 | 0.876923 |
S | 846 | A846V | gCt | gTt | 54 | 54 | B.1.221.3 | 0.045 |
S | 846 | A846V | gCt | gTt | 52 | 52 | AY.44 | 0.000317 |
S | 846 | A846S | Gct | Tct | 50 | 50 | B.28 | 0.163934 |
S | 846 | A846S | Gct | Tct | 44 | 44 | AY.42 | 0.00177 |
S | 846 | A846V | gCt | gTt | 44 | 44 | B.1.177 | 0.000579 |
S | 846 | A846V | gCt | gTt | 42 | 42 | B.1.1 | 0.000762 |
S | 846 | A846S | Gct | Tct | 39 | 39 | AY.103 | 0.000242 |
S | 846 | A846A | gcT | gcC | 38 | 38 | AY.102 | 0.001008 |
S | 846 | A846S | Gct | Tct | 35 | 35 | B.1.2 | 0.000308 |
S | 846 | A846A | gcT | gcA | 35 | 35 | B.1.637 | 0.002558 |
S | 846 | A846G | gCt | gGt | 34 | 34 | B.1.2 | 0.000299 |
S | 846 | A846S | Gct | Tct | 32 | 32 | P.2 | 0.005972 |
S | 846 | A846V | gCt | gTt | 31 | 31 | AY.3 | 0.000308 |
S | 846 | A846S | Gct | Tct | 31 | 31 | B.1 | 0.000284 |
S | 846 | A846V | gCt | gTt | 31 | 31 | B.1.1.519 | 0.001231 |
S | 846 | A846V | gCt | gTt | 31 | 31 | B.1.177.2 | 0.140909 |
S | 846 | A846V | gCt | gTt | 27 | 27 | AY.46.6 | 0.00195 |
S | 846 | A846V | gCt | gTt | 27 | 27 | B.1.160 | 0.000842 |
S | 846 | A846del | GCT | --- | 26 | 26 | B.1.1.7 | 0.000023 |
S | 846 | A846S | Gct | Tct | 24 | 24 | AY.120 | 0.000892 |
S | 846 | A846V | gCt | gTt | 24 | 24 | B.1 | 0.00022 |
S | 846 | A846S | Gct | Tct | 23 | 23 | B.1.351 | 0.000684 |
S | 846 | A846S | Gct | Tct | 22 | 22 | AY.46.6 | 0.001589 |
S | 846 | A846T | Gct | Act | 22 | 22 | B.1.1.7 | 0.00002 |
S | 846 | A846S | Gct | Tct | 21 | 21 | AY.39 | 0.000519 |
S | 846 | A846G | gCt | gGt | 21 | 21 | B.1.1.7 | 0.000019 |
S | 846 | A846S | Gct | Tct | 19 | 19 | AY.117 | 0.001606 |
S | 846 | A846A | gcT | gcC | 13 | 19 | B.1.1.7 | 0.000012 |
S | 846 | A846A | gcT | gcA | 4 | 19 | B.1.1.7 | 0.000004 |
S | 846 | A846A | gcT | gcG | 2 | 19 | B.1.1.7 | 0.000002 |
S | 846 | A846T | Gct | Act | 18 | 19 | B.1.2 | 0.000158 |
S | 846 | A846T | GcT | AcC | 1 | 19 | B.1.2 | 0.000009 |
S | 846 | A846S | Gct | Tct | 18 | 18 | AY.44 | 0.00011 |
S | 846 | A846V | gCt | gTt | 18 | 18 | B.1.258 | 0.001198 |
S | 846 | A846T | Gct | Act | 17 | 17 | AY.103 | 0.000106 |
S | 846 | A846S | Gct | Tct | 16 | 16 | AY.29 | 0.000252 |
S | 846 | A846D | gCt | gAt | 14 | 14 | All | 0.000003 |
S | 846 | A846G | gCt | gGt | 14 | 14 | B.1.160 | 0.000437 |
S | 846 | A846V | gCt | gTt | 14 | 14 | P.1 | 0.000221 |
S | 846 | A846S | Gct | Tct | 13 | 13 | AY.102 | 0.000345 |
S | 846 | A846V | gCt | gTt | 13 | 13 | AY.120 | 0.000483 |
S | 846 | A846S | Gct | Tct | 13 | 13 | AY.3 | 0.000129 |
S | 846 | A846S | Gct | Tct | 13 | 13 | P.1 | 0.000205 |
S | 846 | A846A | gcT | gcC | 12 | 12 | AY.105 | 0.007717 |
S | 846 | A846A | gcT | gcC | 12 | 12 | AY.36 | 0.001779 |
S | 846 | A846T | Gct | Act | 12 | 12 | AY.4 | 0.000019 |
S | 846 | A846S | Gct | Tct | 12 | 12 | B.1.1 | 0.000218 |
S | 846 | A846S | Gct | Tct | 12 | 12 | B.1.177.87 | 0.008734 |
S | 846 | A846V | gCt | gTt | 11 | 11 | AY.117 | 0.00093 |
S | 846 | A846V | gCt | gTt | 11 | 11 | AY.20 | 0.000428 |
S | 846 | A846S | Gct | Tct | 11 | 11 | AY.46.5 | 0.002183 |
S | 846 | A846V | gCt | gTt | 11 | 11 | AY.61 | 0.001153 |
S | 846 | A846S | Gct | Tct | 11 | 11 | B.1.177 | 0.000145 |
S | 846 | A846V | gCt | gTt | 10 | 10 | B.1.1.214 | 0.000555 |
S | 846 | A846V | gCt | gTt | 10 | 10 | B.1.1.294 | 0.012658 |
S | 846 | A846V | gCt | gTt | 10 | 10 | B.1.637 | 0.000731 |
S | 846 | A846S | Gct | Tct | 9 | 9 | AY.120.1 | 0.002889 |
S | 846 | A846G | gCt | gGt | 9 | 9 | AY.29.1 | 0.001985 |
S | 846 | A846A | gcT | gcC | 8 | 9 | AY.39 | 0.000198 |
S | 846 | A846A | gcT | gcG | 1 | 9 | AY.39 | 0.000025 |
S | 846 | A846S | Gct | Tct | 9 | 9 | AY.4.5 | 0.000967 |
S | 846 | A846S | Gct | Tct | 9 | 9 | AY.47 | 0.00028 |
S | 846 | A846F | GCt | TTt | 8 | 8 | All | 0.000002 |
S | 846 | A846P | Gct | Cct | 7 | 8 | All | 0.000001 |
S | 846 | A846P | GcT | CcC | 1 | 8 | All | 0 |
S | 846 | A846V | gCt | gTt | 8 | 8 | AY.5 | 0.000165 |
S | 846 | A846S | Gct | Tct | 8 | 8 | AY.54 | 0.000763 |
S | 846 | A846V | gCt | gTt | 8 | 8 | B.1.177.32 | 0.010796 |
S | 846 | A846V | gCt | gTt | 8 | 8 | B.1.351 | 0.000238 |
S | 846 | A846S | Gct | Tct | 8 | 8 | B.1.526 | 0.000188 |
S | 846 | A846V | gCt | gTt | 7 | 7 | AY.100 | 0.000322 |
S | 846 | A846T | Gct | Act | 7 | 7 | AY.120 | 0.00026 |
S | 846 | A846S | Gct | Tct | 7 | 7 | AY.121 | 0.000947 |
S | 846 | A846V | gCt | gTt | 7 | 7 | AY.39 | 0.000173 |
S | 846 | A846V | gCt | gTt | 7 | 7 | AY.4.2 | 0.000152 |
S | 846 | A846S | Gct | Tct | 7 | 7 | AY.5 | 0.000145 |
S | 846 | A846V | gCt | gTt | 7 | 7 | AY.6 | 0.000288 |
S | 846 | A846S | Gct | Tct | 7 | 7 | AY.61 | 0.000733 |
S | 846 | A846S | Gct | Tct | 7 | 7 | AY.98.1 | 0.000339 |
S | 846 | A846del2 | gCT | g-- | 3 | 6 | All | 0.000001 |
S | 846 | A846del2 | GCt | --t | 3 | 6 | All | 0.000001 |
S | 846 | A846V | gCt | gTt | 6 | 6 | AY.102 | 0.000159 |
S | 846 | A846V | gCt | gTt | 6 | 6 | AY.29 | 0.000095 |
S | 846 | A846T | Gct | Act | 6 | 6 | AY.44 | 0.000037 |
S | 846 | A846V | gCt | gTt | 6 | 6 | AY.46 | 0.000624 |
S | 846 | A846A | gcT | gcA | 6 | 6 | B.1.1.63 | 0.002315 |
S | 846 | A846S | Gct | Tct | 6 | 6 | B.1.1.70 | 0.002046 |
S | 846 | A846V | gCt | gTt | 6 | 6 | B.1.243 | 0.000418 |
S | 846 | A846V | gCt | gTt | 6 | 6 | B.1.595 | 0.001566 |
S | 846 | A846A | gcT | gcC | 6 | 6 | B.6 | 0.00546 |
S | 846 | A846V | gCt | gTt | 5 | 5 | AY.113 | 0.000712 |
S | 846 | A846V | gCt | gTt | 5 | 5 | AY.121 | 0.000677 |
S | 846 | A846S | Gct | Tct | 5 | 5 | AY.14 | 0.00044 |
S | 846 | A846S | Gct | Tct | 5 | 5 | AY.34 | 0.000485 |
S | 846 | A846V | gCt | gTt | 5 | 5 | AY.34.1 | 0.00255 |
S | 846 | A846A | gcT | gcC | 5 | 5 | AY.4 | 0.000008 |
S | 846 | A846T | Gct | Act | 5 | 5 | AY.43 | 0.000022 |
S | 846 | A846G | gCt | gGt | 5 | 5 | AY.44 | 0.00003 |
S | 846 | A846V | gCt | gTt | 5 | 5 | AY.47 | 0.000156 |
S | 846 | A846V | gCt | gTt | 5 | 5 | AY.9 | 0.000338 |
S | 846 | A846S | Gct | Tct | 5 | 5 | B.1.1.28 | 0.001556 |
S | 846 | A846V | gCt | gTt | 5 | 5 | B.1.1.318 | 0.001509 |
S | 846 | A846A | gcT | gcC | 5 | 5 | B.1.2 | 0.000044 |
S | 846 | A846V | gCt | gTt | 5 | 5 | B.1.369 | 0.001426 |
S | 846 | A846S | Gct | Tct | 5 | 5 | B.1.429 | 0.000118 |
S | 846 | A846V | gCt | gTt | 5 | 5 | B.1.526 | 0.000118 |
S | 846 | A846V | gCt | gTt | 5 | 5 | B.1.596 | 0.000436 |
S | 846 | A846S | Gct | Tct | 2 | 4 | 0.111111 | |
S | 846 | A846S | GcT | TcG | 1 | 4 | 0.055556 | |
S | 846 | A846S | GcT | TcA | 1 | 4 | 0.055556 | |
S | 846 | A846S | Gct | Tct | 4 | 4 | AD.2 | 0.000876 |
S | 846 | A846del1 | Gct | -ct | 2 | 4 | All | 0 |
S | 846 | A846del1 | gcT | gc- | 2 | 4 | All | 0 |
S | 846 | A846A | gcT | gcC | 4 | 4 | AY.103 | 0.000025 |
S | 846 | A846V | gCt | gTt | 4 | 4 | AY.116 | 0.001147 |
S | 846 | A846V | gCt | gTt | 4 | 4 | AY.26 | 0.000113 |
S | 846 | A846V | gCt | gTt | 4 | 4 | AY.33 | 0.000267 |
S | 846 | A846V | gCt | gTt | 4 | 4 | AY.34 | 0.000388 |
S | 846 | A846del | GCT | --- | 4 | 4 | AY.4.5 | 0.00043 |
S | 846 | A846V | gCt | gTt | 4 | 4 | AY.42 | 0.000161 |
S | 846 | A846del | GCT | --- | 4 | 4 | AY.43 | 0.000018 |
S | 846 | A846V | gCt | gTt | 4 | 4 | AY.9.2 | 0.000147 |
S | 846 | A846V | gCt | gTt | 4 | 4 | AY.96 | 0.008299 |
S | 846 | A846A | gcT | gcC | 2 | 4 | B.1 | 0.000018 |
S | 846 | A846A | gcT | gcA | 2 | 4 | B.1 | 0.000018 |
S | 846 | A846V | gCt | gTt | 4 | 4 | B.1.1.161 | 0.014134 |
S | 846 | A846A | gcT | gcC | 4 | 4 | B.1.1.174 | 0.013514 |
S | 846 | A846V | gCt | gTt | 4 | 4 | B.1.1.317 | 0.001647 |
S | 846 | A846F | GCt | TTt | 4 | 4 | B.1.1.459 | 0.061538 |
S | 846 | A846S | Gct | Tct | 4 | 4 | B.1.1.519 | 0.000159 |
S | 846 | A846D | gCt | gAt | 4 | 4 | B.1.1.7 | 0.000004 |
S | 846 | A846V | gCt | gTt | 4 | 4 | B.1.177.45 | 0.001525 |
S | 846 | A846S | Gct | Tct | 4 | 4 | B.1.223 | 0.011111 |
S | 846 | A846V | gCt | gTt | 4 | 4 | B.1.389 | 0.004008 |
S | 846 | A846S | Gct | Tct | 4 | 4 | P.1.7 | 0.001277 |
S | 846 | A846V | gCt | gTt | 4 | 4 | R.1 | 0.00036 |
S | 846 | A846A | gcT | gcA | 1 | 3 | 0.055556 | |
S | 846 | A846A | gcT | gcC | 1 | 3 | 0.055556 | |
S | 846 | A846A | gcT | gcG | 1 | 3 | 0.055556 | |
S | 846 | A846V | gCt | gTt | 3 | 3 | A.2.5 | 0.001497 |
S | 846 | A846V | gCt | gTt | 3 | 3 | AY.23 | 0.000209 |
S | 846 | A846A | gcT | gcC | 3 | 3 | AY.26 | 0.000085 |
S | 846 | A846A | gcT | gcC | 3 | 3 | AY.33 | 0.0002 |
S | 846 | A846S | Gct | Tct | 3 | 3 | AY.39.1 | 0.000119 |
S | 846 | A846V | gCt | gTt | 3 | 3 | AY.39.1 | 0.000119 |
S | 846 | A846del | GCT | --- | 3 | 3 | AY.4 | 0.000005 |
S | 846 | A846A | gcT | gcC | 3 | 3 | AY.44 | 0.000018 |
S | 846 | A846V | gCt | gTt | 3 | 3 | AY.45 | 0.000365 |
S | 846 | A846V | gCt | gTt | 3 | 3 | AY.5.4 | 0.00083 |
S | 846 | A846S | Gct | Tct | 3 | 3 | AY.53 | 0.000863 |
S | 846 | A846V | gCt | gTt | 3 | 3 | AY.75 | 0.000168 |
S | 846 | A846V | gCt | gTt | 3 | 3 | AY.9.1 | 0.000251 |
S | 846 | A846V | gCt | gTt | 3 | 3 | AY.92 | 0.000862 |
S | 846 | A846A | gcT | gcC | 3 | 3 | AY.93 | 0.000819 |
S | 846 | A846S | Gct | Tct | 3 | 3 | AY.99.2 | 0.000276 |
S | 846 | A846V | gCt | gTt | 3 | 3 | B | 0.000383 |
S | 846 | A846A | gcT | gcC | 2 | 3 | B.1.1 | 0.000036 |
S | 846 | A846A | gcT | gcA | 1 | 3 | B.1.1 | 0.000018 |
S | 846 | A846V | gCt | gTt | 3 | 3 | B.1.1.10 | 0.003344 |
S | 846 | A846V | gCt | gTt | 3 | 3 | B.1.162 | 0.015075 |
S | 846 | A846V | gCt | gTt | 3 | 3 | B.1.177.81 | 0.000568 |
S | 846 | A846S | Gct | Tct | 3 | 3 | B.1.221 | 0.000213 |
S | 846 | A846V | gCt | gTt | 3 | 3 | B.1.232 | 0.001612 |
S | 846 | A846V | gCt | gTt | 3 | 3 | B.1.234 | 0.000396 |
S | 846 | A846V | gCt | gTt | 3 | 3 | B.1.311 | 0.000824 |
S | 846 | A846A | gcT | gcC | 2 | 3 | B.1.351 | 0.000059 |
S | 846 | A846A | gcT | gcG | 1 | 3 | B.1.351 | 0.00003 |
S | 846 | A846S | Gct | Tct | 3 | 3 | B.1.36 | 0.000438 |
S | 846 | A846V | gCt | gTt | 3 | 3 | B.1.36.17 | 0.001482 |
S | 846 | A846V | gCt | gTt | 3 | 3 | B.1.575 | 0.00091 |
S | 846 | A846V | gCt | gTt | 3 | 3 | B.1.612 | 0.007958 |
S | 846 | A846T | Gct | Act | 3 | 3 | B.1.617.2 | 0.000011 |
S | 846 | A846V | gCt | gTt | 3 | 3 | B.1.618 | 0.012097 |
S | 846 | A846F | GCt | TTt | 3 | 3 | P.1 | 0.000047 |
S | 846 | A846V | gCt | gTt | 3 | 3 | W.1 | 0.026087 |
S | 846 | A846del | GCT | --- | 2 | 2 | 0.111111 | |
S | 846 | A846S | Gct | Tct | 2 | 2 | A.23.1 | 0.001408 |
S | 846 | A846V | gCt | gTt | 2 | 2 | A.28 | 0.005291 |
S | 846 | A846A | gcT | gcC | 2 | 2 | AU.1 | 0.002532 |
S | 846 | A846V | gCt | gTt | 2 | 2 | AY.109 | 0.001479 |
S | 846 | A846V | gCt | gTt | 2 | 2 | AY.111 | 0.000366 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.111 | 0.000366 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.113 | 0.000285 |
S | 846 | A846V | gCt | gTt | 2 | 2 | AY.118 | 0.000125 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.119 | 0.000071 |
S | 846 | A846V | gCt | gTt | 2 | 2 | AY.119 | 0.000071 |
S | 846 | A846V | gCt | gTt | 2 | 2 | AY.14 | 0.000176 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.23 | 0.000139 |
S | 846 | A846T | Gct | Act | 2 | 2 | AY.25 | 0.000012 |
S | 846 | A846A | gcT | gcC | 2 | 2 | AY.25 | 0.000012 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.32 | 0.001065 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.35 | 0.000466 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.36 | 0.000296 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.38 | 0.000999 |
S | 846 | A846G | gCt | gGt | 2 | 2 | AY.4 | 0.000003 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.4.4 | 0.000818 |
S | 846 | A846V | gCt | gTt | 2 | 2 | AY.4.5 | 0.000215 |
S | 846 | A846A | gcT | gcG | 1 | 2 | AY.43 | 0.000004 |
S | 846 | A846A | gcT | gcC | 1 | 2 | AY.43 | 0.000004 |
S | 846 | A846P | GcT | CcC | 1 | 2 | AY.44 | 0.000006 |
S | 846 | A846P | Gct | Cct | 1 | 2 | AY.44 | 0.000006 |
S | 846 | A846A | gcT | gcC | 2 | 2 | AY.45 | 0.000243 |
S | 846 | A846V | gCt | gTt | 2 | 2 | AY.46.2 | 0.001271 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.46.4 | 0.000329 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.5.4 | 0.000553 |
S | 846 | A846V | gCt | gTt | 2 | 2 | AY.59 | 0.001059 |
S | 846 | A846A | gcT | gcC | 2 | 2 | AY.6 | 0.000082 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.60 | 0.001876 |
S | 846 | A846V | gCt | gTt | 2 | 2 | AY.69 | 0.000373 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.7.1 | 0.000225 |
S | 846 | A846V | gCt | gTt | 2 | 2 | AY.74 | 0.000231 |
S | 846 | A846V | gCt | gTt | 2 | 2 | AY.84 | 0.000875 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.9 | 0.000135 |
S | 846 | A846S | Gct | Tct | 2 | 2 | AY.9.2 | 0.000073 |
S | 846 | A846V | gCt | gTt | 2 | 2 | AY.98 | 0.000158 |
S | 846 | A846del | GCT | --- | 2 | 2 | B.1 | 0.000018 |
S | 846 | A846G | gCt | gGt | 2 | 2 | B.1 | 0.000018 |
S | 846 | A846del | GCT | --- | 2 | 2 | B.1.1 | 0.000036 |
S | 846 | A846S | Gct | Tct | 2 | 2 | B.1.1.214 | 0.000111 |
S | 846 | A846A | gcT | gcC | 2 | 2 | B.1.1.222 | 0.000408 |
S | 846 | A846del | GCT | --- | 2 | 2 | B.1.1.236 | 0.013793 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.1.284 | 0.000215 |
S | 846 | A846S | Gct | Tct | 2 | 2 | B.1.1.306 | 0.000877 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.1.434 | 0.000697 |
S | 846 | A846P | Gct | Cct | 2 | 2 | B.1.1.7 | 0.000002 |
S | 846 | A846A | gcT | gcC | 2 | 2 | B.1.157 | 0.00597 |
S | 846 | A846S | Gct | Tct | 2 | 2 | B.1.170 | 0.008621 |
S | 846 | A846del | GCT | --- | 2 | 2 | B.1.177 | 0.000026 |
S | 846 | A846del1 | gcT | gc- | 1 | 2 | B.1.177 | 0.000013 |
S | 846 | A846del1 | Gct | -ct | 1 | 2 | B.1.177 | 0.000013 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.177.12 | 0.000303 |
S | 846 | A846del | GCT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
S | 846 | A846del | GCT | --- | 2 | 2 | B.1.177.54 | 0.001213 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.177.57 | 0.000562 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.177.62 | 0.002384 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.177.65 | 0.001331 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.177.7 | 0.00033 |
S | 846 | A846T | Gct | Act | 2 | 2 | B.1.177.75 | 0.002081 |
S | 846 | A846S | Gct | Tct | 2 | 2 | B.1.177.81 | 0.000379 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.177.86 | 0.000367 |
S | 846 | A846S | Gct | Tct | 2 | 2 | B.1.221.3 | 0.001667 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.224 | 0.05 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.236 | 0.004107 |
S | 846 | A846S | Gct | Tct | 2 | 2 | B.1.240 | 0.000431 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.258.17 | 0.000208 |
S | 846 | A846S | Gct | Tct | 2 | 2 | B.1.311 | 0.000549 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.36.18 | 0.00084 |
S | 846 | A846S | Gct | Tct | 2 | 2 | B.1.36.29 | 0.001035 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.427 | 0.000101 |
S | 846 | A846S | Gct | Tct | 2 | 2 | B.1.427 | 0.000101 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.433 | 0.00639 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.466.2 | 0.000782 |
S | 846 | A846A | gcT | gcC | 2 | 2 | B.1.526 | 0.000047 |
S | 846 | A846T | Gct | Act | 2 | 2 | B.1.561 | 0.000794 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.561 | 0.000794 |
S | 846 | A846V | gCt | gTt | 2 | 2 | B.1.617.1 | 0.000258 |
S | 846 | A846G | gCt | gGt | 2 | 2 | B.1.617.2 | 0.000008 |
S | 846 | A846S | Gct | Tct | 2 | 2 | B.1.637 | 0.000146 |
S | 846 | A846V | gCt | gTt | 2 | 2 | C.37 | 0.000232 |
S | 846 | A846V | gCt | gTt | 2 | 2 | D.2 | 0.00015 |
S | 846 | A846V | gCt | gTt | 2 | 2 | N.5 | 0.003534 |
S | 846 | A846G | gCt | gGt | 2 | 2 | P.1.17 | 0.000324 |
S | 846 | A846S | Gct | Tct | 2 | 2 | Q.1 | 0.000253 |
S | 846 | A846V | gCt | gTt | 2 | 2 | Q.1 | 0.000253 |
S | 846 | A846S | Gct | Tct | 2 | 2 | Q.4 | 0.00091 |
S | 846 | A846G | gCt | gGt | 1 | 1 | 0.055556 | |
S | 846 | A846F | GCt | TTt | 1 | 1 | 0.055556 | |
S | 846 | A846I | GCt | ATt | 1 | 1 | 0.055556 | |
S | 846 | A846N | GCt | AAt | 1 | 1 | 0.055556 | |
S | 846 | A846V | gCt | gTt | 1 | 1 | 0.055556 | |
S | 846 | A846T | Gct | Act | 1 | 1 | 0.055556 | |
S | 846 | A846D | gCt | gAt | 1 | 1 | 0.055556 | |
S | 846 | A846Y | GCt | TAt | 1 | 1 | 0.055556 | |
S | 846 | A846D | gCt | gAt | 1 | 1 | A | 0.000387 |
S | 846 | A846V | gCt | gTt | 1 | 1 | A | 0.000387 |
S | 846 | A846del | GCT | --- | 1 | 1 | A | 0.000387 |
S | 846 | A846S | Gct | Tct | 1 | 1 | A | 0.000387 |
S | 846 | A846V | gCt | gTt | 1 | 1 | A.2.5.1 | 0.004808 |
S | 846 | A846V | gCt | gTt | 1 | 1 | A.21 | 0.00277 |
S | 846 | A846S | Gct | Tct | 1 | 1 | A.4 | 0.012821 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AE.8 | 0.000489 |
S | 846 | A846del | GCT | --- | 1 | 1 | AH.3 | 0.003802 |
S | 846 | A846K | GCT | AAG | 1 | 1 | All | 0 |
S | 846 | A846I | GCt | ATt | 1 | 1 | All | 0 |
S | 846 | A846N | GCt | AAt | 1 | 1 | All | 0 |
S | 846 | A846Y | GCt | TAt | 1 | 1 | All | 0 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AM.2 | 0.111111 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AM.4 | 0.003571 |
S | 846 | A846T | Gct | Act | 1 | 1 | AY.102 | 0.000027 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.106 | 0.000335 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.114 | 0.000231 |
S | 846 | A846del | GCT | --- | 1 | 1 | AY.117 | 0.000085 |
S | 846 | A846G | gCt | gGt | 1 | 1 | AY.117 | 0.000085 |
S | 846 | A846T | Gct | Act | 1 | 1 | AY.118 | 0.000063 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.118 | 0.000063 |
S | 846 | A846G | gCt | gGt | 1 | 1 | AY.120 | 0.000037 |
S | 846 | A846del | GCT | --- | 1 | 1 | AY.120 | 0.000037 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.120.1 | 0.000321 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.120.2 | 0.001285 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.121 | 0.000135 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.16 | 0.00038 |
S | 846 | A846D | gCt | gAt | 1 | 1 | AY.20 | 0.000039 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.20 | 0.000039 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.20 | 0.000039 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.24 | 0.000431 |
S | 846 | A846G | gCt | gGt | 1 | 1 | AY.25 | 0.000006 |
S | 846 | A846del | GCT | --- | 1 | 1 | AY.25 | 0.000006 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.27 | 0.000065 |
S | 846 | A846D | gCt | gAt | 1 | 1 | AY.29 | 0.000016 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.29.1 | 0.000221 |
S | 846 | A846del | GCT | --- | 1 | 1 | AY.3.1 | 0.000085 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.32 | 0.000532 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.32 | 0.000532 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.33 | 0.000067 |
S | 846 | A846del | GCT | --- | 1 | 1 | AY.36 | 0.000148 |
S | 846 | A846P | Gct | Cct | 1 | 1 | AY.39 | 0.000025 |
S | 846 | A846D | gCt | gAt | 1 | 1 | AY.4 | 0.000002 |
S | 846 | A846del2 | GCt | --t | 1 | 1 | AY.4 | 0.000002 |
S | 846 | A846P | Gct | Cct | 1 | 1 | AY.4 | 0.000002 |
S | 846 | A846del1 | gcT | gc- | 1 | 1 | AY.4 | 0.000002 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.4.5 | 0.000107 |
S | 846 | A846G | gCt | gGt | 1 | 1 | AY.43 | 0.000004 |
S | 846 | A846D | gCt | gAt | 1 | 1 | AY.44 | 0.000006 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.45 | 0.000122 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.46 | 0.000104 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.46 | 0.000104 |
S | 846 | A846del2 | gCT | g-- | 1 | 1 | AY.46.2 | 0.000635 |
S | 846 | A846del | GCT | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.47 | 0.000031 |
S | 846 | A846T | Gct | Act | 1 | 1 | AY.47 | 0.000031 |
S | 846 | A846del | GCT | --- | 1 | 1 | AY.5 | 0.000021 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.5.3 | 0.000337 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.5.3 | 0.000337 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.51 | 0.000909 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.54 | 0.000095 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.55 | 0.000917 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.55 | 0.000917 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.58 | 0.000907 |
S | 846 | A846D | gCt | gAt | 1 | 1 | AY.6 | 0.000041 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.60 | 0.000938 |
S | 846 | A846T | Gct | Act | 1 | 1 | AY.61 | 0.000105 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.68 | 0.000274 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.70 | 0.000209 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.71 | 0.000475 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.75 | 0.000056 |
S | 846 | A846del | GCT | --- | 1 | 1 | AY.75 | 0.000056 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.75.1 | 0.00018 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.79 | 0.001211 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.86 | 0.00083 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.87 | 0.000833 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.88 | 0.000884 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.9 | 0.000068 |
S | 846 | A846T | Gct | Act | 1 | 1 | AY.9 | 0.000068 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.9.1 | 0.000084 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.91 | 0.00073 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.93 | 0.000273 |
S | 846 | A846G | gCt | gGt | 1 | 1 | AY.98 | 0.000079 |
S | 846 | A846S | Gct | Tct | 1 | 1 | AY.98 | 0.000079 |
S | 846 | A846V | gCt | gTt | 1 | 1 | AY.98.1 | 0.000048 |
S | 846 | A846del | GCT | --- | 1 | 1 | AY.98.1 | 0.000048 |
S | 846 | A846A | gcT | gcC | 1 | 1 | AY.98.1 | 0.000048 |
S | 846 | A846del | GCT | --- | 1 | 1 | AY.99.1 | 0.001553 |
S | 846 | A846A | gcT | gcA | 1 | 1 | B | 0.000128 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B | 0.000128 |
S | 846 | A846D | gCt | gAt | 1 | 1 | B.1 | 0.000009 |
S | 846 | A846T | Gct | Act | 1 | 1 | B.1 | 0.000009 |
S | 846 | A846P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
S | 846 | A846G | gCt | gGt | 1 | 1 | B.1.1 | 0.000018 |
S | 846 | A846del2 | GCt | --t | 1 | 1 | B.1.1 | 0.000018 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.117 | 0.009709 |
S | 846 | A846G | gCt | gGt | 1 | 1 | B.1.1.138 | 0.006061 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.166 | 0.033333 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.170 | 0.001247 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.1.189 | 0.001513 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.25 | 0.000569 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.277 | 0.000759 |
S | 846 | A846A | gcT | gcC | 1 | 1 | B.1.1.277 | 0.000759 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.306 | 0.000438 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.1.312 | 0.001912 |
S | 846 | A846G | gCt | gGt | 1 | 1 | B.1.1.318 | 0.000302 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.1.318 | 0.000302 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.326 | 0.001761 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.349 | 0.010309 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.368 | 0.003086 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.37 | 0.000193 |
S | 846 | A846A | gcT | gcC | 1 | 1 | B.1.1.370 | 0.012658 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.1.374 | 0.002375 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.391 | 0.008547 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.406 | 0.006494 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.416 | 0.000905 |
S | 846 | A846A | gcT | gcC | 1 | 1 | B.1.1.432 | 0.001266 |
S | 846 | A846A | gcT | gcC | 1 | 1 | B.1.1.448 | 0.002033 |
S | 846 | A846T | Gct | Act | 1 | 1 | B.1.1.51 | 0.001718 |
S | 846 | A846P | Gct | Cct | 1 | 1 | B.1.1.514 | 0.038462 |
S | 846 | A846T | Gct | Act | 1 | 1 | B.1.1.519 | 0.00004 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.1.528 | 0.004808 |
S | 846 | A846K | GCT | AAG | 1 | 1 | B.1.1.7 | 0.000001 |
S | 846 | A846del1 | Gct | -ct | 1 | 1 | B.1.1.7 | 0.000001 |
S | 846 | A846del2 | GCt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.160 | 0.000031 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.160.16 | 0.000929 |
S | 846 | A846A | gcT | gcA | 1 | 1 | B.1.177 | 0.000013 |
S | 846 | A846del2 | gCT | g-- | 1 | 1 | B.1.177 | 0.000013 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.177.10 | 0.000878 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.177.32 | 0.00135 |
S | 846 | A846A | gcT | gcC | 1 | 1 | B.1.177.44 | 0.000519 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.177.52 | 0.001757 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.177.53 | 0.002392 |
S | 846 | A846del2 | gCT | g-- | 1 | 1 | B.1.177.54 | 0.000606 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.177.56 | 0.000668 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.177.60 | 0.000218 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
S | 846 | A846T | Gct | Act | 1 | 1 | B.1.177.65 | 0.000665 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.177.7 | 0.000165 |
S | 846 | A846T | Gct | Act | 1 | 1 | B.1.177.73 | 0.000566 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.179 | 0.003759 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 846 | A846T | Gct | Act | 1 | 1 | B.1.221 | 0.000071 |
S | 846 | A846A | gcT | gcC | 1 | 1 | B.1.221 | 0.000071 |
S | 846 | A846G | gCt | gGt | 1 | 1 | B.1.221 | 0.000071 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.234 | 0.000132 |
S | 846 | A846G | gCt | gGt | 1 | 1 | B.1.241 | 0.000812 |
S | 846 | A846A | gcT | gcC | 1 | 1 | B.1.243 | 0.00007 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.258.11 | 0.000396 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.258.17 | 0.000104 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.3 | 0.002618 |
S | 846 | A846D | gCt | gAt | 1 | 1 | B.1.321 | 0.034483 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.324 | 0.001605 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.329 | 0.000608 |
S | 846 | A846A | gcT | gcC | 1 | 1 | B.1.350 | 0.002933 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 846 | A846T | Gct | Act | 1 | 1 | B.1.351 | 0.00003 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.36 | 0.000146 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.36.18 | 0.00042 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.36.19 | 0.009259 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.36.26 | 0.002857 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.36.29 | 0.000517 |
S | 846 | A846A | gcT | gcC | 1 | 1 | B.1.36.37 | 0.002778 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.362 | 0.001541 |
S | 846 | A846G | gCt | gGt | 1 | 1 | B.1.362 | 0.001541 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.369 | 0.000285 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.377 | 0.004566 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.385 | 0.010638 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.396 | 0.000706 |
S | 846 | A846T | Gct | Act | 1 | 1 | B.1.396 | 0.000706 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.400 | 0.000429 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.404 | 0.001302 |
S | 846 | A846G | gCt | gGt | 1 | 1 | B.1.409 | 0.000781 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.428 | 0.00102 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.438.1 | 0.000107 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.469 | 0.00361 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.504 | 0.03125 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.517 | 0.000427 |
S | 846 | A846T | Gct | Act | 1 | 1 | B.1.525 | 0.000113 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.525 | 0.000113 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.538 | 0.008065 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.551 | 0.00129 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.564 | 0.000426 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.565 | 0.00081 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.575 | 0.000303 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.596 | 0.000087 |
S | 846 | A846del | GCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 846 | A846D | gCt | gAt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.620 | 0.000946 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.621 | 0.000089 |
S | 846 | A846A | gcT | gcA | 1 | 1 | B.1.621 | 0.000089 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.621 | 0.000089 |
S | 846 | A846S | Gct | Tct | 1 | 1 | B.1.9.4 | 0.006135 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.1.93 | 0.000934 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.12 | 0.00641 |
S | 846 | A846V | gCt | gTt | 1 | 1 | B.55 | 0.00295 |
S | 846 | A846V | gCt | gTt | 1 | 1 | C.36 | 0.000911 |
S | 846 | A846V | gCt | gTt | 1 | 1 | C.36.3 | 0.000567 |
S | 846 | A846S | Gct | Tct | 1 | 1 | C.37 | 0.000116 |
S | 846 | A846T | Gct | Act | 1 | 1 | D.2 | 0.000075 |
S | 846 | A846A | gcT | gcA | 1 | 1 | D.2 | 0.000075 |
S | 846 | A846V | gCt | gTt | 1 | 1 | D.5 | 0.004975 |
S | 846 | A846A | gcT | gcC | 1 | 1 | P.1 | 0.000016 |
S | 846 | A846S | Gct | Tct | 1 | 1 | P.1.1 | 0.000318 |
S | 846 | A846del | GCT | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 846 | A846V | gCt | gTt | 1 | 1 | P.1.14 | 0.000048 |
S | 846 | A846del | GCT | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 846 | A846A | gcT | gcA | 1 | 1 | P.1.17 | 0.000162 |
S | 846 | A846S | Gct | Tct | 1 | 1 | P.1.17 | 0.000162 |
S | 846 | A846V | gCt | gTt | 1 | 1 | P.1.2 | 0.001156 |
S | 846 | A846V | gCt | gTt | 1 | 1 | P.2 | 0.000187 |
S | 846 | A846V | gCt | gTt | 1 | 1 | P.6 | 0.003145 |
S | 846 | A846S | Gct | Tct | 1 | 1 | P.7 | 0.004367 |
S | 846 | A846A | gcT | gcC | 1 | 1 | Q.1 | 0.000126 |
S | 846 | A846del | GCT | --- | 1 | 1 | Q.2 | 0.000613 |
S | 846 | A846V | gCt | gTt | 1 | 1 | Q.3 | 0.000145 |
S | 846 | A846S | Gct | Tct | 1 | 1 | Q.3 | 0.000145 |
S | 846 | A846V | gCt | gTt | 1 | 1 | Q.4 | 0.000455 |
S | 846 | A846del | GCT | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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