CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 845 | A845S | nonsyn | Gct | Tct | 15049 | 15047 | 0.999867 | 24095-24097 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 845 | A845S | Gct | Tct | 15047 | 15049 | All | 0.002878 |
S | 845 | A845S | Gct | Tct | 2736 | 2736 | B.1.1.7 | 0.002449 |
S | 845 | A845S | Gct | Tct | 2385 | 2385 | AY.4 | 0.003712 |
S | 845 | A845S | Gct | Tct | 1505 | 1505 | B.1.1.317 | 0.619597 |
S | 845 | A845S | Gct | Tct | 676 | 676 | AY.86 | 0.560996 |
S | 845 | A845S | Gct | Tct | 639 | 639 | B.1.526 | 0.015019 |
S | 845 | A845S | Gct | Tct | 501 | 501 | B.1.617.2 | 0.001886 |
S | 845 | A845S | Gct | Tct | 489 | 489 | P.1.14 | 0.023375 |
S | 845 | A845S | Gct | Tct | 448 | 448 | B.1.311 | 0.123009 |
S | 845 | A845S | Gct | Tct | 400 | 400 | P.1 | 0.006302 |
S | 845 | A845S | Gct | Tct | 363 | 363 | AY.43 | 0.001608 |
S | 845 | A845S | Gct | Tct | 316 | 316 | B.1.351 | 0.009394 |
S | 845 | A845S | Gct | Tct | 262 | 262 | C.36.3.1 | 0.711957 |
S | 845 | A845S | Gct | Tct | 260 | 260 | AY.23 | 0.018135 |
S | 845 | A845S | Gct | Tct | 216 | 216 | AY.44 | 0.001315 |
S | 845 | A845S | Gct | Tct | 190 | 190 | AY.103 | 0.00118 |
S | 845 | A845S | Gct | Tct | 186 | 186 | B.1.2 | 0.001638 |
S | 845 | A845S | Gct | Tct | 166 | 166 | B.1.258 | 0.011047 |
S | 845 | A845S | Gct | Tct | 143 | 143 | B.1.1 | 0.002594 |
S | 845 | A845S | Gct | Tct | 140 | 140 | B.1 | 0.001282 |
S | 845 | A845S | Gct | Tct | 115 | 115 | AY.25 | 0.000692 |
S | 845 | A845S | Gct | Tct | 112 | 112 | B.1.177 | 0.001475 |
S | 845 | A845S | Gct | Tct | 110 | 110 | AY.6 | 0.004524 |
S | 845 | A845S | Gct | Tct | 108 | 108 | AY.120 | 0.004015 |
S | 845 | A845S | Gct | Tct | 103 | 103 | AY.9.1 | 0.008624 |
S | 845 | A845S | Gct | Tct | 92 | 92 | B.1.595 | 0.024008 |
S | 845 | A845S | Gct | Tct | 89 | 89 | AY.35 | 0.020741 |
S | 845 | A845S | Gct | Tct | 84 | 84 | AY.19 | 0.095781 |
S | 845 | A845S | Gct | Tct | 84 | 84 | AY.3 | 0.000835 |
S | 845 | A845S | Gct | Tct | 73 | 73 | AY.119 | 0.002578 |
S | 845 | A845S | Gct | Tct | 64 | 64 | AY.46.6 | 0.004621 |
S | 845 | A845S | Gct | Tct | 63 | 63 | AY.33 | 0.004207 |
S | 845 | A845S | Gct | Tct | 59 | 59 | B.1.429 | 0.001388 |
S | 845 | A845S | Gct | Tct | 55 | 55 | AY.29 | 0.000868 |
S | 845 | A845S | Gct | Tct | 54 | 54 | AY.100 | 0.002484 |
S | 845 | A845S | Gct | Tct | 54 | 54 | AY.102 | 0.001432 |
S | 845 | A845S | Gct | Tct | 54 | 54 | B.1.596 | 0.004705 |
S | 845 | A845S | Gct | Tct | 51 | 51 | AY.26 | 0.001444 |
S | 845 | A845S | Gct | Tct | 45 | 45 | B.1.177.15 | 0.028391 |
S | 845 | A845S | Gct | Tct | 41 | 41 | AY.20 | 0.001593 |
S | 845 | A845S | Gct | Tct | 40 | 40 | AY.4.2 | 0.000868 |
S | 845 | A845S | Gct | Tct | 36 | 36 | B.40 | 0.013115 |
S | 845 | A845S | Gct | Tct | 34 | 34 | B.1.620 | 0.032167 |
S | 845 | A845S | Gct | Tct | 33 | 33 | AY.75.1 | 0.00595 |
S | 845 | A845S | Gct | Tct | 33 | 33 | B.1.621 | 0.002921 |
S | 845 | A845S | Gct | Tct | 32 | 32 | AY.5.3 | 0.010796 |
S | 845 | A845S | Gct | Tct | 31 | 31 | AY.30 | 0.012268 |
S | 845 | A845S | Gct | Tct | 31 | 31 | AY.39 | 0.000766 |
S | 845 | A845S | Gct | Tct | 31 | 31 | AY.9.2 | 0.001139 |
S | 845 | A845S | Gct | Tct | 29 | 29 | AY.61 | 0.003039 |
S | 845 | A845S | Gct | Tct | 25 | 25 | B.1.1.483 | 0.961538 |
S | 845 | A845S | Gct | Tct | 24 | 24 | AY.98.1 | 0.001162 |
S | 845 | A845S | Gct | Tct | 24 | 24 | B.1.1.519 | 0.000953 |
S | 845 | A845S | Gct | Tct | 23 | 23 | AY.42 | 0.000925 |
S | 845 | A845S | Gct | Tct | 23 | 23 | B.1.617.1 | 0.002966 |
S | 845 | A845S | Gct | Tct | 22 | 22 | AY.5 | 0.000454 |
S | 845 | A845S | Gct | Tct | 22 | 22 | B.1.177.56 | 0.014686 |
S | 845 | A845S | Gct | Tct | 20 | 20 | AY.45 | 0.002434 |
S | 845 | A845S | Gct | Tct | 20 | 20 | B.1.1.219 | 0.1 |
S | 845 | A845S | Gct | Tct | 20 | 20 | B.1.1.304 | 0.05618 |
S | 845 | A845S | Gct | Tct | 20 | 20 | B.1.239 | 0.02442 |
S | 845 | A845S | Gct | Tct | 19 | 19 | AY.16.1 | 0.008929 |
S | 845 | A845S | Gct | Tct | 19 | 19 | P.1.16 | 0.007108 |
S | 845 | A845S | Gct | Tct | 18 | 18 | AY.69 | 0.00336 |
S | 845 | A845S | Gct | Tct | 17 | 17 | B.1.243 | 0.001183 |
S | 845 | A845S | Gct | Tct | 17 | 17 | B.1.575.1 | 0.041463 |
S | 845 | A845S | Gct | Tct | 17 | 17 | C.36.2 | 0.586207 |
S | 845 | A845S | Gct | Tct | 16 | 16 | A.2.5 | 0.007984 |
S | 845 | A845S | Gct | Tct | 16 | 16 | P.1.1 | 0.005083 |
S | 845 | A845S | Gct | Tct | 15 | 15 | B.1.525 | 0.001697 |
S | 845 | A845S | Gct | Tct | 13 | 13 | AY.36 | 0.001927 |
S | 845 | A845S | Gct | Tct | 12 | 12 | B.1.1.305 | 0.046332 |
S | 845 | A845S | Gct | Tct | 12 | 12 | P.1.10 | 0.003234 |
S | 845 | A845S | Gct | Tct | 11 | 11 | AY.41 | 0.003233 |
S | 845 | A845S | Gct | Tct | 11 | 11 | AY.47 | 0.000342 |
S | 845 | A845S | Gct | Tct | 11 | 11 | B.1.177.44 | 0.005708 |
S | 845 | A845S | Gct | Tct | 11 | 11 | P.1.15 | 0.002556 |
S | 845 | A845S | Gct | Tct | 11 | 11 | P.2 | 0.002053 |
S | 845 | A845S | Gct | Tct | 10 | 10 | AY.14 | 0.00088 |
S | 845 | A845S | Gct | Tct | 10 | 10 | AY.9 | 0.000676 |
S | 845 | A845S | Gct | Tct | 10 | 10 | AY.99.2 | 0.000922 |
S | 845 | A845S | Gct | Tct | 10 | 10 | B.1.1.33 | 0.004209 |
S | 845 | A845S | Gct | Tct | 9 | 9 | AY.68 | 0.002464 |
S | 845 | A845S | Gct | Tct | 9 | 9 | AY.72 | 0.012245 |
S | 845 | A845S | Gct | Tct | 9 | 9 | AY.96 | 0.018672 |
S | 845 | A845S | Gct | Tct | 9 | 9 | AY.98 | 0.000711 |
S | 845 | A845S | Gct | Tct | 9 | 9 | B.1.1.344 | 0.096774 |
S | 845 | A845S | Gct | Tct | 9 | 9 | B.1.298 | 0.019027 |
S | 845 | A845S | Gct | Tct | 9 | 9 | B.1.438.1 | 0.000965 |
S | 845 | A845S | Gct | Tct | 9 | 9 | B.1.597 | 0.041667 |
S | 845 | A845S | Gct | Tct | 9 | 9 | R.1 | 0.00081 |
S | 845 | A845S | Gct | Tct | 8 | 8 | AY.117 | 0.000676 |
S | 845 | A845S | Gct | Tct | 8 | 8 | AY.12 | 0.002528 |
S | 845 | A845S | Gct | Tct | 8 | 8 | AY.121 | 0.001083 |
S | 845 | A845S | Gct | Tct | 8 | 8 | AY.34.1 | 0.00408 |
S | 845 | A845S | Gct | Tct | 8 | 8 | AY.55 | 0.007339 |
S | 845 | A845S | Gct | Tct | 8 | 8 | B.1.1.214 | 0.000444 |
S | 845 | A845S | Gct | Tct | 8 | 8 | B.1.1.368 | 0.024691 |
S | 845 | A845S | Gct | Tct | 8 | 8 | B.1.221 | 0.000568 |
S | 845 | A845S | Gct | Tct | 8 | 8 | B.1.36.26 | 0.022857 |
S | 845 | A845S | Gct | Tct | 8 | 8 | C.36.3 | 0.004538 |
S | 845 | A845S | Gct | Tct | 7 | 7 | AY.106 | 0.002344 |
S | 845 | A845S | Gct | Tct | 7 | 7 | AY.13 | 0.001127 |
S | 845 | A845S | Gct | Tct | 7 | 7 | AY.75 | 0.000392 |
S | 845 | A845S | Gct | Tct | 7 | 7 | B.1.1.216 | 0.006233 |
S | 845 | A845S | Gct | Tct | 7 | 7 | B.1.1.222 | 0.001428 |
S | 845 | A845S | Gct | Tct | 7 | 7 | B.1.1.28 | 0.002179 |
S | 845 | A845S | Gct | Tct | 7 | 7 | B.1.369 | 0.001997 |
S | 845 | A845S | Gct | Tct | 7 | 7 | P.1.12 | 0.003388 |
S | 845 | A845S | Gct | Tct | 6 | 6 | AY.113 | 0.000854 |
S | 845 | A845S | Gct | Tct | 6 | 6 | AY.116 | 0.001721 |
S | 845 | A845S | Gct | Tct | 6 | 6 | AY.3.1 | 0.000512 |
S | 845 | A845S | Gct | Tct | 6 | 6 | AY.4.4 | 0.002455 |
S | 845 | A845S | Gct | Tct | 6 | 6 | AY.46 | 0.000624 |
S | 845 | A845S | Gct | Tct | 6 | 6 | AY.54 | 0.000572 |
S | 845 | A845S | Gct | Tct | 6 | 6 | B.1.36 | 0.000875 |
S | 845 | A845S | Gct | Tct | 6 | 6 | B.1.400 | 0.002574 |
S | 845 | A845S | Gct | Tct | 5 | 5 | AY.118 | 0.000313 |
S | 845 | A845S | Gct | Tct | 5 | 5 | AY.48 | 0.002326 |
S | 845 | A845S | Gct | Tct | 5 | 5 | AY.62 | 0.002179 |
S | 845 | A845S | Gct | Tct | 5 | 5 | B.1.160 | 0.000156 |
S | 845 | A845S | Gct | Tct | 5 | 5 | B.1.427 | 0.000252 |
S | 845 | A845S | Gct | Tct | 5 | 5 | D.2 | 0.000375 |
S | 845 | A845S | Gct | Tct | 5 | 5 | P.1.7 | 0.001596 |
S | 845 | A845S | Gct | Tct | 2 | 4 | 0.111111 | |
S | 845 | A845S | Gct | Tct | 4 | 4 | A | 0.001548 |
S | 845 | A845S | Gct | Tct | 4 | 4 | AY.1 | 0.001583 |
S | 845 | A845S | Gct | Tct | 4 | 4 | AY.108 | 0.00441 |
S | 845 | A845S | Gct | Tct | 4 | 4 | AY.5.4 | 0.001107 |
S | 845 | A845S | Gct | Tct | 4 | 4 | AY.64 | 0.002381 |
S | 845 | A845S | Gct | Tct | 4 | 4 | AY.88 | 0.003537 |
S | 845 | A845S | Gct | Tct | 4 | 4 | AY.99 | 0.004197 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.1.232 | 0.00726 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.1.312 | 0.007648 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.1.431 | 0.064516 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.1.464 | 0.005891 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.177.86 | 0.000734 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.36.18 | 0.001681 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.396 | 0.002823 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.540 | 0.038835 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.544 | 0.024096 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.558 | 0.018265 |
S | 845 | A845S | Gct | Tct | 4 | 4 | C.37 | 0.000464 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.27 | 0.000194 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.34 | 0.000291 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.4.2.1 | 0.000447 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.46.4 | 0.000494 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.53 | 0.000863 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.58 | 0.002722 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.74 | 0.000347 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.92 | 0.000862 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.93 | 0.000819 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.99.1 | 0.004658 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.1.318 | 0.000905 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.177.21 | 0.000229 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.177.57 | 0.000843 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.234 | 0.000396 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.36.1 | 0.003421 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.362 | 0.004622 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.437 | 0.0625 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.470 | 0.004213 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.621.1 | 0.001517 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.628 | 0.001057 |
S | 845 | A845S | Gct | Tct | 3 | 3 | P.1.17 | 0.000485 |
S | 845 | A845S | Gct | Tct | 3 | 3 | Q.1 | 0.000379 |
S | 845 | A845S | Gct | Tct | 3 | 3 | Q.7 | 0.003333 |
S | 845 | A845S | Gct | Tct | 3 | 3 | S.1 | 0.014851 |
S | 845 | A845S | Gct | Tct | 2 | 2 | A.1 | 0.000564 |
S | 845 | A845S | Gct | Tct | 2 | 2 | A.2.5.2 | 0.003145 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AA.1 | 0.014493 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AU.3 | 0.004219 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.107 | 0.000932 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.23.1 | 0.000835 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.32 | 0.001065 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.38 | 0.000999 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.39.1 | 0.000079 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.52 | 0.001629 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.7.1 | 0.000225 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.81 | 0.003984 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.94 | 0.000885 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B | 0.000256 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.134 | 0.022727 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.261 | 0.017241 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.269 | 0.002706 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.294 | 0.002532 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.348 | 0.001592 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.370 | 0.025316 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.448 | 0.004065 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.521 | 0.010695 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.177.10 | 0.001756 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.177.20 | 0.003035 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.177.81 | 0.000379 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.240 | 0.000431 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.241 | 0.001623 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.258.11 | 0.000793 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.3 | 0.005236 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.351.2 | 0.000605 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.351.3 | 0.001753 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.36.17 | 0.000988 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.36.29 | 0.001035 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.367 | 0.001585 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.416 | 0.002538 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.576 | 0.001813 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.609 | 0.000959 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.623 | 0.001073 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.9 | 0.012346 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.91 | 0.004149 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.10 | 0.016529 |
S | 845 | A845S | Gct | Tct | 2 | 2 | C.29 | 0.125 |
S | 845 | A845S | Gct | Tct | 2 | 2 | N.5 | 0.003534 |
S | 845 | A845S | Gct | Tct | 2 | 2 | Q.3 | 0.00029 |
S | 845 | A845S | Gct | Tct | 1 | 1 | A.2.4 | 0.003367 |
S | 845 | A845S | Gct | Tct | 1 | 1 | A.3 | 0.002096 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AL.1 | 0.012987 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AT.1 | 0.005128 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AU.2 | 0.002421 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.105 | 0.000643 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.109 | 0.00074 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.110 | 0.000113 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.111 | 0.000183 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.115 | 0.005208 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.116.1 | 0.000311 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.120.1 | 0.000321 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.120.2 | 0.001285 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.16 | 0.00038 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.2 | 0.000356 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.21 | 0.001898 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.37 | 0.000316 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.4.5 | 0.000107 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.46.1 | 0.001027 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.46.2 | 0.000635 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.46.5 | 0.000198 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.51 | 0.000909 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.57 | 0.000656 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.60 | 0.000938 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.63 | 0.000387 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.65 | 0.000533 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.73 | 0.000665 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.79 | 0.001211 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.83 | 0.001724 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.84 | 0.000437 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.87 | 0.000833 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.89 | 0.004902 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.90 | 0.000684 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.91 | 0.00073 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.95 | 0.000761 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.1 | 0.000327 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.111 | 0.014706 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.133 | 0.008475 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.135 | 0.004695 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.157 | 0.000913 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.170 | 0.001247 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.174 | 0.003378 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.198 | 0.001468 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.204 | 0.00304 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.205 | 0.003717 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.220 | 0.001859 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.240 | 0.004695 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.275 | 0.011236 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.306 | 0.000438 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.326 | 0.001761 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.328 | 0.016949 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.349 | 0.010309 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.359 | 0.027778 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.362 | 0.005618 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.365 | 0.005587 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.369 | 0.000446 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.39 | 0.00051 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.412 | 0.007634 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.420 | 0.001006 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.432 | 0.001266 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.47 | 0.005348 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.5 | 0.008333 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.526 | 0.003546 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.528 | 0.004808 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.62 | 0.027027 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.63 | 0.000386 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.70 | 0.000341 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.110 | 0.004525 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.160.15 | 0.00495 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.169 | 0.014925 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.12 | 0.000152 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.35 | 0.000691 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.38 | 0.010417 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.4 | 0.000211 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.53 | 0.002392 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.69 | 0.001484 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.75 | 0.001041 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.77 | 0.000726 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.85 | 0.005435 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.87 | 0.000728 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.210 | 0.002132 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.214.2 | 0.0006 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.232 | 0.000537 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.237 | 0.004975 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.305 | 0.002151 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.324 | 0.001605 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.336 | 0.002439 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.36.10 | 0.004785 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.36.36 | 0.000602 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.375 | 0.00082 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.389 | 0.001002 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.398 | 0.002976 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.420 | 0.010417 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.441 | 0.009615 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.466.2 | 0.000391 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.471 | 0.002732 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.474 | 0.001901 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.517 | 0.000427 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.524 | 0.001406 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.546 | 0.003704 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.564.1 | 0.001577 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.565 | 0.00081 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.568 | 0.001111 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.575 | 0.000303 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.617.3 | 0.002985 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.618 | 0.004032 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.619 | 0.000871 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.93 | 0.000934 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.11 | 0.005128 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.6.6 | 0.000889 |
S | 845 | A845S | Gct | Tct | 1 | 1 | C.1 | 0.002392 |
S | 845 | A845S | Gct | Tct | 1 | 1 | C.16 | 0.00106 |
S | 845 | A845S | Gct | Tct | 1 | 1 | C.17 | 0.055556 |
S | 845 | A845S | Gct | Tct | 1 | 1 | C.35 | 0.000774 |
S | 845 | A845S | Gct | Tct | 1 | 1 | C.36 | 0.000911 |
S | 845 | A845S | Gct | Tct | 1 | 1 | L.3 | 0.003546 |
S | 845 | A845S | Gct | Tct | 1 | 1 | N.9 | 0.005952 |
S | 845 | A845S | Gct | Tct | 1 | 1 | P.1.17.1 | 0.000875 |
S | 845 | A845S | Gct | Tct | 1 | 1 | P.1.2 | 0.001156 |
S | 845 | A845S | Gct | Tct | 1 | 1 | P.3 | 0.001595 |
S | 845 | A845S | Gct | Tct | 1 | 1 | P.7 | 0.004367 |
S | 845 | A845S | Gct | Tct | 1 | 1 | Q.2 | 0.000613 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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