CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 845 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S845A845SnonsynGctTct15049150470.99986724095-24097

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S845A845SGctTct1504715049All0.002878
S845A845SGctTct27362736B.1.1.70.002449
S845A845SGctTct23852385AY.40.003712
S845A845SGctTct15051505B.1.1.3170.619597
S845A845SGctTct676676AY.860.560996
S845A845SGctTct639639B.1.5260.015019
S845A845SGctTct501501B.1.617.20.001886
S845A845SGctTct489489P.1.140.023375
S845A845SGctTct448448B.1.3110.123009
S845A845SGctTct400400P.10.006302
S845A845SGctTct363363AY.430.001608
S845A845SGctTct316316B.1.3510.009394
S845A845SGctTct262262C.36.3.10.711957
S845A845SGctTct260260AY.230.018135
S845A845SGctTct216216AY.440.001315
S845A845SGctTct190190AY.1030.00118
S845A845SGctTct186186B.1.20.001638
S845A845SGctTct166166B.1.2580.011047
S845A845SGctTct143143B.1.10.002594
S845A845SGctTct140140B.10.001282
S845A845SGctTct115115AY.250.000692
S845A845SGctTct112112B.1.1770.001475
S845A845SGctTct110110AY.60.004524
S845A845SGctTct108108AY.1200.004015
S845A845SGctTct103103AY.9.10.008624
S845A845SGctTct9292B.1.5950.024008
S845A845SGctTct8989AY.350.020741
S845A845SGctTct8484AY.190.095781
S845A845SGctTct8484AY.30.000835
S845A845SGctTct7373AY.1190.002578
S845A845SGctTct6464AY.46.60.004621
S845A845SGctTct6363AY.330.004207
S845A845SGctTct5959B.1.4290.001388
S845A845SGctTct5555AY.290.000868
S845A845SGctTct5454AY.1000.002484
S845A845SGctTct5454AY.1020.001432
S845A845SGctTct5454B.1.5960.004705
S845A845SGctTct5151AY.260.001444
S845A845SGctTct4545B.1.177.150.028391
S845A845SGctTct4141AY.200.001593
S845A845SGctTct4040AY.4.20.000868
S845A845SGctTct3636B.400.013115
S845A845SGctTct3434B.1.6200.032167
S845A845SGctTct3333AY.75.10.00595
S845A845SGctTct3333B.1.6210.002921
S845A845SGctTct3232AY.5.30.010796
S845A845SGctTct3131AY.300.012268
S845A845SGctTct3131AY.390.000766
S845A845SGctTct3131AY.9.20.001139
S845A845SGctTct2929AY.610.003039
S845A845SGctTct2525B.1.1.4830.961538
S845A845SGctTct2424AY.98.10.001162
S845A845SGctTct2424B.1.1.5190.000953
S845A845SGctTct2323AY.420.000925
S845A845SGctTct2323B.1.617.10.002966
S845A845SGctTct2222AY.50.000454
S845A845SGctTct2222B.1.177.560.014686
S845A845SGctTct2020AY.450.002434
S845A845SGctTct2020B.1.1.2190.1
S845A845SGctTct2020B.1.1.3040.05618
S845A845SGctTct2020B.1.2390.02442
S845A845SGctTct1919AY.16.10.008929
S845A845SGctTct1919P.1.160.007108
S845A845SGctTct1818AY.690.00336
S845A845SGctTct1717B.1.2430.001183
S845A845SGctTct1717B.1.575.10.041463
S845A845SGctTct1717C.36.20.586207
S845A845SGctTct1616A.2.50.007984
S845A845SGctTct1616P.1.10.005083
S845A845SGctTct1515B.1.5250.001697
S845A845SGctTct1313AY.360.001927
S845A845SGctTct1212B.1.1.3050.046332
S845A845SGctTct1212P.1.100.003234
S845A845SGctTct1111AY.410.003233
S845A845SGctTct1111AY.470.000342
S845A845SGctTct1111B.1.177.440.005708
S845A845SGctTct1111P.1.150.002556
S845A845SGctTct1111P.20.002053
S845A845SGctTct1010AY.140.00088
S845A845SGctTct1010AY.90.000676
S845A845SGctTct1010AY.99.20.000922
S845A845SGctTct1010B.1.1.330.004209
S845A845SGctTct99AY.680.002464
S845A845SGctTct99AY.720.012245
S845A845SGctTct99AY.960.018672
S845A845SGctTct99AY.980.000711
S845A845SGctTct99B.1.1.3440.096774
S845A845SGctTct99B.1.2980.019027
S845A845SGctTct99B.1.438.10.000965
S845A845SGctTct99B.1.5970.041667
S845A845SGctTct99R.10.00081
S845A845SGctTct88AY.1170.000676
S845A845SGctTct88AY.120.002528
S845A845SGctTct88AY.1210.001083
S845A845SGctTct88AY.34.10.00408
S845A845SGctTct88AY.550.007339
S845A845SGctTct88B.1.1.2140.000444
S845A845SGctTct88B.1.1.3680.024691
S845A845SGctTct88B.1.2210.000568
S845A845SGctTct88B.1.36.260.022857
S845A845SGctTct88C.36.30.004538
S845A845SGctTct77AY.1060.002344
S845A845SGctTct77AY.130.001127
S845A845SGctTct77AY.750.000392
S845A845SGctTct77B.1.1.2160.006233
S845A845SGctTct77B.1.1.2220.001428
S845A845SGctTct77B.1.1.280.002179
S845A845SGctTct77B.1.3690.001997
S845A845SGctTct77P.1.120.003388
S845A845SGctTct66AY.1130.000854
S845A845SGctTct66AY.1160.001721
S845A845SGctTct66AY.3.10.000512
S845A845SGctTct66AY.4.40.002455
S845A845SGctTct66AY.460.000624
S845A845SGctTct66AY.540.000572
S845A845SGctTct66B.1.360.000875
S845A845SGctTct66B.1.4000.002574
S845A845SGctTct55AY.1180.000313
S845A845SGctTct55AY.480.002326
S845A845SGctTct55AY.620.002179
S845A845SGctTct55B.1.1600.000156
S845A845SGctTct55B.1.4270.000252
S845A845SGctTct55D.20.000375
S845A845SGctTct55P.1.70.001596
S845A845SGctTct240.111111
S845A845SGctTct44A0.001548
S845A845SGctTct44AY.10.001583
S845A845SGctTct44AY.1080.00441
S845A845SGctTct44AY.5.40.001107
S845A845SGctTct44AY.640.002381
S845A845SGctTct44AY.880.003537
S845A845SGctTct44AY.990.004197
S845A845SGctTct44B.1.1.2320.00726
S845A845SGctTct44B.1.1.3120.007648
S845A845SGctTct44B.1.1.4310.064516
S845A845SGctTct44B.1.1.4640.005891
S845A845SGctTct44B.1.177.860.000734
S845A845SGctTct44B.1.36.180.001681
S845A845SGctTct44B.1.3960.002823
S845A845SGctTct44B.1.5400.038835
S845A845SGctTct44B.1.5440.024096
S845A845SGctTct44B.1.5580.018265
S845A845SGctTct44C.370.000464
S845A845SGctTct33AY.270.000194
S845A845SGctTct33AY.340.000291
S845A845SGctTct33AY.4.2.10.000447
S845A845SGctTct33AY.46.40.000494
S845A845SGctTct33AY.530.000863
S845A845SGctTct33AY.580.002722
S845A845SGctTct33AY.740.000347
S845A845SGctTct33AY.920.000862
S845A845SGctTct33AY.930.000819
S845A845SGctTct33AY.99.10.004658
S845A845SGctTct33B.1.1.3180.000905
S845A845SGctTct33B.1.177.210.000229
S845A845SGctTct33B.1.177.570.000843
S845A845SGctTct33B.1.2340.000396
S845A845SGctTct33B.1.36.10.003421
S845A845SGctTct33B.1.3620.004622
S845A845SGctTct33B.1.4370.0625
S845A845SGctTct33B.1.4700.004213
S845A845SGctTct33B.1.621.10.001517
S845A845SGctTct33B.1.6280.001057
S845A845SGctTct33P.1.170.000485
S845A845SGctTct33Q.10.000379
S845A845SGctTct33Q.70.003333
S845A845SGctTct33S.10.014851
S845A845SGctTct22A.10.000564
S845A845SGctTct22A.2.5.20.003145
S845A845SGctTct22AA.10.014493
S845A845SGctTct22AU.30.004219
S845A845SGctTct22AY.1070.000932
S845A845SGctTct22AY.23.10.000835
S845A845SGctTct22AY.320.001065
S845A845SGctTct22AY.380.000999
S845A845SGctTct22AY.39.10.000079
S845A845SGctTct22AY.520.001629
S845A845SGctTct22AY.7.10.000225
S845A845SGctTct22AY.810.003984
S845A845SGctTct22AY.940.000885
S845A845SGctTct22B0.000256
S845A845SGctTct22B.1.1.1340.022727
S845A845SGctTct22B.1.1.2610.017241
S845A845SGctTct22B.1.1.2690.002706
S845A845SGctTct22B.1.1.2940.002532
S845A845SGctTct22B.1.1.3480.001592
S845A845SGctTct22B.1.1.3700.025316
S845A845SGctTct22B.1.1.4480.004065
S845A845SGctTct22B.1.1.5210.010695
S845A845SGctTct22B.1.177.100.001756
S845A845SGctTct22B.1.177.200.003035
S845A845SGctTct22B.1.177.810.000379
S845A845SGctTct22B.1.2400.000431
S845A845SGctTct22B.1.2410.001623
S845A845SGctTct22B.1.258.110.000793
S845A845SGctTct22B.1.30.005236
S845A845SGctTct22B.1.351.20.000605
S845A845SGctTct22B.1.351.30.001753
S845A845SGctTct22B.1.36.170.000988
S845A845SGctTct22B.1.36.290.001035
S845A845SGctTct22B.1.3670.001585
S845A845SGctTct22B.1.4160.002538
S845A845SGctTct22B.1.5760.001813
S845A845SGctTct22B.1.6090.000959
S845A845SGctTct22B.1.6230.001073
S845A845SGctTct22B.1.90.012346
S845A845SGctTct22B.1.910.004149
S845A845SGctTct22B.100.016529
S845A845SGctTct22C.290.125
S845A845SGctTct22N.50.003534
S845A845SGctTct22Q.30.00029
S845A845SGctTct11A.2.40.003367
S845A845SGctTct11A.30.002096
S845A845SGctTct11AL.10.012987
S845A845SGctTct11AT.10.005128
S845A845SGctTct11AU.20.002421
S845A845SGctTct11AY.1050.000643
S845A845SGctTct11AY.1090.00074
S845A845SGctTct11AY.1100.000113
S845A845SGctTct11AY.1110.000183
S845A845SGctTct11AY.1150.005208
S845A845SGctTct11AY.116.10.000311
S845A845SGctTct11AY.120.10.000321
S845A845SGctTct11AY.120.20.001285
S845A845SGctTct11AY.160.00038
S845A845SGctTct11AY.20.000356
S845A845SGctTct11AY.210.001898
S845A845SGctTct11AY.370.000316
S845A845SGctTct11AY.4.50.000107
S845A845SGctTct11AY.46.10.001027
S845A845SGctTct11AY.46.20.000635
S845A845SGctTct11AY.46.50.000198
S845A845SGctTct11AY.510.000909
S845A845SGctTct11AY.570.000656
S845A845SGctTct11AY.600.000938
S845A845SGctTct11AY.630.000387
S845A845SGctTct11AY.650.000533
S845A845SGctTct11AY.730.000665
S845A845SGctTct11AY.790.001211
S845A845SGctTct11AY.830.001724
S845A845SGctTct11AY.840.000437
S845A845SGctTct11AY.870.000833
S845A845SGctTct11AY.890.004902
S845A845SGctTct11AY.900.000684
S845A845SGctTct11AY.910.00073
S845A845SGctTct11AY.950.000761
S845A845SGctTct11B.1.1.10.000327
S845A845SGctTct11B.1.1.1110.014706
S845A845SGctTct11B.1.1.1330.008475
S845A845SGctTct11B.1.1.1350.004695
S845A845SGctTct11B.1.1.1570.000913
S845A845SGctTct11B.1.1.1700.001247
S845A845SGctTct11B.1.1.1740.003378
S845A845SGctTct11B.1.1.1980.001468
S845A845SGctTct11B.1.1.2040.00304
S845A845SGctTct11B.1.1.2050.003717
S845A845SGctTct11B.1.1.2200.001859
S845A845SGctTct11B.1.1.2400.004695
S845A845SGctTct11B.1.1.2750.011236
S845A845SGctTct11B.1.1.3060.000438
S845A845SGctTct11B.1.1.3260.001761
S845A845SGctTct11B.1.1.3280.016949
S845A845SGctTct11B.1.1.3490.010309
S845A845SGctTct11B.1.1.3590.027778
S845A845SGctTct11B.1.1.3620.005618
S845A845SGctTct11B.1.1.3650.005587
S845A845SGctTct11B.1.1.3690.000446
S845A845SGctTct11B.1.1.370.000193
S845A845SGctTct11B.1.1.390.00051
S845A845SGctTct11B.1.1.4120.007634
S845A845SGctTct11B.1.1.4200.001006
S845A845SGctTct11B.1.1.4320.001266
S845A845SGctTct11B.1.1.470.005348
S845A845SGctTct11B.1.1.50.008333
S845A845SGctTct11B.1.1.5260.003546
S845A845SGctTct11B.1.1.5280.004808
S845A845SGctTct11B.1.1.620.027027
S845A845SGctTct11B.1.1.630.000386
S845A845SGctTct11B.1.1.700.000341
S845A845SGctTct11B.1.1100.004525
S845A845SGctTct11B.1.160.150.00495
S845A845SGctTct11B.1.1690.014925
S845A845SGctTct11B.1.177.120.000152
S845A845SGctTct11B.1.177.350.000691
S845A845SGctTct11B.1.177.380.010417
S845A845SGctTct11B.1.177.40.000211
S845A845SGctTct11B.1.177.530.002392
S845A845SGctTct11B.1.177.690.001484
S845A845SGctTct11B.1.177.750.001041
S845A845SGctTct11B.1.177.770.000726
S845A845SGctTct11B.1.177.850.005435
S845A845SGctTct11B.1.177.870.000728
S845A845SGctTct11B.1.2100.002132
S845A845SGctTct11B.1.214.20.0006
S845A845SGctTct11B.1.2320.000537
S845A845SGctTct11B.1.2370.004975
S845A845SGctTct11B.1.3050.002151
S845A845SGctTct11B.1.3240.001605
S845A845SGctTct11B.1.3360.002439
S845A845SGctTct11B.1.36.100.004785
S845A845SGctTct11B.1.36.360.000602
S845A845SGctTct11B.1.3750.00082
S845A845SGctTct11B.1.3890.001002
S845A845SGctTct11B.1.3980.002976
S845A845SGctTct11B.1.4200.010417
S845A845SGctTct11B.1.4410.009615
S845A845SGctTct11B.1.466.20.000391
S845A845SGctTct11B.1.4710.002732
S845A845SGctTct11B.1.4740.001901
S845A845SGctTct11B.1.5170.000427
S845A845SGctTct11B.1.5240.001406
S845A845SGctTct11B.1.5460.003704
S845A845SGctTct11B.1.564.10.001577
S845A845SGctTct11B.1.5650.00081
S845A845SGctTct11B.1.5680.001111
S845A845SGctTct11B.1.5750.000303
S845A845SGctTct11B.1.617.30.002985
S845A845SGctTct11B.1.6180.004032
S845A845SGctTct11B.1.6190.000871
S845A845SGctTct11B.1.930.000934
S845A845SGctTct11B.110.005128
S845A845SGctTct11B.6.60.000889
S845A845SGctTct11C.10.002392
S845A845SGctTct11C.160.00106
S845A845SGctTct11C.170.055556
S845A845SGctTct11C.350.000774
S845A845SGctTct11C.360.000911
S845A845SGctTct11L.30.003546
S845A845SGctTct11N.90.005952
S845A845SGctTct11P.1.17.10.000875
S845A845SGctTct11P.1.20.001156
S845A845SGctTct11P.30.001595
S845A845SGctTct11P.70.004367
S845A845SGctTct11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.