CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 845 | A845S | nonsyn | Gct | Tct | 15049 | 15047 | 0.999867 | 24095-24097 | |
S | 845 | A845S | nonsyn | GcT | TcA | 15049 | 1 | 0.0000664496 | 24095-24097 | |
S | 845 | A845S | nonsyn | GcT | TcG | 15049 | 1 | 0.0000664496 | 24095-24097 | |
S | 845 | A845A | syn | gcT | gcC | 1883 | 1510 | 0.801912 | 24095-24097 | |
S | 845 | A845A | syn | gcT | gcA | 1883 | 367 | 0.194902 | 24095-24097 | |
S | 845 | A845A | syn | gcT | gcG | 1883 | 6 | 0.0031864 | 24095-24097 | |
S | 845 | A845V | nonsyn | gCt | gTt | 1822 | 1821 | 0.999451 | 24095-24097 | |
S | 845 | A845V | nonsyn | gCT | gTC | 1822 | 1 | 0.000548847 | 24095-24097 | |
S | 845 | A845T | nonsyn | Gct | Act | 139 | 138 | 0.992806 | 24095-24097 | |
S | 845 | A845T | nonsyn | GcT | AcC | 139 | 1 | 0.00719424 | 24095-24097 | |
S | 845 | A845D | nonsyn | gCt | gAt | 117 | 117 | 1 | 24095-24097 | |
S | 845 | A845del | del | GCT | --- | 54 | 54 | 1 | 24095-24097 | |
S | 845 | A845P | nonsyn | Gct | Cct | 37 | 37 | 1 | 24095-24097 | |
S | 845 | A845G | nonsyn | gCt | gGt | 22 | 20 | 0.909091 | 24095-24097 | |
S | 845 | A845G | nonsyn | gCT | gGG | 22 | 1 | 0.0454545 | 24095-24097 | |
S | 845 | A845G | nonsyn | gCT | gGA | 22 | 1 | 0.0454545 | 24095-24097 | |
S | 845 | A845del1 | del | gcT | gc- | 16 | 15 | 0.9375 | 24095-24097 | |
S | 845 | A845del1 | del | Gct | -ct | 16 | 1 | 0.0625 | 24095-24097 | |
S | 845 | A845del2 | del | gCT | g-- | 4 | 3 | 0.75 | 24095-24097 | |
S | 845 | A845del2 | del | GCt | --t | 4 | 1 | 0.25 | 24095-24097 | |
S | 845 | A845C | nonsyn | GCt | TGt | 3 | 3 | 1 | 24095-24097 | |
S | 845 | A845X | nonsyn | GCT | TGA | 1 | 1 | 1 | 24095-24097 | |
S | 845 | A845W | nonsyn | GCT | TGG | 1 | 1 | 1 | 24095-24097 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 845 | A845S | Gct | Tct | 15047 | 15049 | All | 0.002878 |
S | 845 | A845S | GcT | TcG | 1 | 15049 | All | 0 |
S | 845 | A845S | GcT | TcA | 1 | 15049 | All | 0 |
S | 845 | A845S | Gct | Tct | 2736 | 2736 | B.1.1.7 | 0.002449 |
S | 845 | A845S | Gct | Tct | 2385 | 2385 | AY.4 | 0.003712 |
S | 845 | A845A | gcT | gcC | 1510 | 1883 | All | 0.000289 |
S | 845 | A845A | gcT | gcA | 367 | 1883 | All | 0.00007 |
S | 845 | A845A | gcT | gcG | 6 | 1883 | All | 0.000001 |
S | 845 | A845V | gCt | gTt | 1821 | 1822 | All | 0.000348 |
S | 845 | A845V | gCT | gTC | 1 | 1822 | All | 0 |
S | 845 | A845S | Gct | Tct | 1505 | 1505 | B.1.1.317 | 0.619597 |
S | 845 | A845A | gcT | gcC | 1267 | 1267 | A.23.1 | 0.892254 |
S | 845 | A845S | Gct | Tct | 676 | 676 | AY.86 | 0.560996 |
S | 845 | A845S | Gct | Tct | 639 | 639 | B.1.526 | 0.015019 |
S | 845 | A845S | Gct | Tct | 501 | 501 | B.1.617.2 | 0.001886 |
S | 845 | A845S | Gct | Tct | 489 | 489 | P.1.14 | 0.023375 |
S | 845 | A845S | Gct | Tct | 448 | 448 | B.1.311 | 0.123009 |
S | 845 | A845S | Gct | Tct | 400 | 400 | P.1 | 0.006302 |
S | 845 | A845V | gCt | gTt | 390 | 390 | B.1.1.7 | 0.000349 |
S | 845 | A845S | Gct | Tct | 363 | 363 | AY.43 | 0.001608 |
S | 845 | A845V | gCt | gTt | 361 | 361 | AY.4 | 0.000562 |
S | 845 | A845A | gcT | gcA | 311 | 319 | B.1.1.7 | 0.000278 |
S | 845 | A845A | gcT | gcC | 8 | 319 | B.1.1.7 | 0.000007 |
S | 845 | A845S | Gct | Tct | 316 | 316 | B.1.351 | 0.009394 |
S | 845 | A845S | Gct | Tct | 262 | 262 | C.36.3.1 | 0.711957 |
S | 845 | A845S | Gct | Tct | 260 | 260 | AY.23 | 0.018135 |
S | 845 | A845S | Gct | Tct | 216 | 216 | AY.44 | 0.001315 |
S | 845 | A845S | Gct | Tct | 190 | 190 | AY.103 | 0.00118 |
S | 845 | A845S | Gct | Tct | 186 | 186 | B.1.2 | 0.001638 |
S | 845 | A845S | Gct | Tct | 166 | 166 | B.1.258 | 0.011047 |
S | 845 | A845S | Gct | Tct | 143 | 143 | B.1.1 | 0.002594 |
S | 845 | A845S | Gct | Tct | 140 | 140 | B.1 | 0.001282 |
S | 845 | A845T | Gct | Act | 138 | 139 | All | 0.000026 |
S | 845 | A845T | GcT | AcC | 1 | 139 | All | 0 |
S | 845 | A845D | gCt | gAt | 117 | 117 | All | 0.000022 |
S | 845 | A845S | Gct | Tct | 115 | 115 | AY.25 | 0.000692 |
S | 845 | A845S | Gct | Tct | 112 | 112 | B.1.177 | 0.001475 |
S | 845 | A845S | Gct | Tct | 110 | 110 | AY.6 | 0.004524 |
S | 845 | A845S | Gct | Tct | 108 | 108 | AY.120 | 0.004015 |
S | 845 | A845S | Gct | Tct | 103 | 103 | AY.9.1 | 0.008624 |
S | 845 | A845V | gCt | gTt | 98 | 98 | B.1.617.2 | 0.000369 |
S | 845 | A845S | Gct | Tct | 92 | 92 | B.1.595 | 0.024008 |
S | 845 | A845S | Gct | Tct | 89 | 89 | AY.35 | 0.020741 |
S | 845 | A845A | gcT | gcC | 88 | 88 | A.23 | 0.926316 |
S | 845 | A845S | Gct | Tct | 84 | 84 | AY.19 | 0.095781 |
S | 845 | A845S | Gct | Tct | 84 | 84 | AY.3 | 0.000835 |
S | 845 | A845V | gCt | gTt | 80 | 80 | AY.43 | 0.000354 |
S | 845 | A845S | Gct | Tct | 73 | 73 | AY.119 | 0.002578 |
S | 845 | A845D | gCt | gAt | 71 | 71 | B.1 | 0.00065 |
S | 845 | A845V | gCt | gTt | 66 | 66 | AY.25 | 0.000397 |
S | 845 | A845S | Gct | Tct | 64 | 64 | AY.46.6 | 0.004621 |
S | 845 | A845S | Gct | Tct | 63 | 63 | AY.33 | 0.004207 |
S | 845 | A845V | gCt | gTt | 62 | 62 | AY.103 | 0.000385 |
S | 845 | A845S | Gct | Tct | 59 | 59 | B.1.429 | 0.001388 |
S | 845 | A845S | Gct | Tct | 55 | 55 | AY.29 | 0.000868 |
S | 845 | A845del | GCT | --- | 54 | 54 | All | 0.00001 |
S | 845 | A845S | Gct | Tct | 54 | 54 | AY.100 | 0.002484 |
S | 845 | A845S | Gct | Tct | 54 | 54 | AY.102 | 0.001432 |
S | 845 | A845S | Gct | Tct | 54 | 54 | B.1.596 | 0.004705 |
S | 845 | A845S | Gct | Tct | 51 | 51 | AY.26 | 0.001444 |
S | 845 | A845V | gCt | gTt | 51 | 51 | B.1.2 | 0.000449 |
S | 845 | A845V | gCt | gTt | 47 | 47 | B.1.1 | 0.000853 |
S | 845 | A845S | Gct | Tct | 45 | 45 | B.1.177.15 | 0.028391 |
S | 845 | A845V | gCt | gTt | 43 | 43 | AY.46.2 | 0.027319 |
S | 845 | A845A | gcT | gcA | 25 | 42 | B.1.617.2 | 0.000094 |
S | 845 | A845A | gcT | gcC | 17 | 42 | B.1.617.2 | 0.000064 |
S | 845 | A845S | Gct | Tct | 41 | 41 | AY.20 | 0.001593 |
S | 845 | A845V | gCt | gTt | 41 | 41 | AY.3 | 0.000408 |
S | 845 | A845S | Gct | Tct | 40 | 40 | AY.4.2 | 0.000868 |
S | 845 | A845P | Gct | Cct | 37 | 37 | All | 0.000007 |
S | 845 | A845V | gCt | gTt | 37 | 37 | B.1 | 0.000339 |
S | 845 | A845S | Gct | Tct | 36 | 36 | B.40 | 0.013115 |
S | 845 | A845S | Gct | Tct | 34 | 34 | B.1.620 | 0.032167 |
S | 845 | A845T | Gct | Act | 33 | 33 | AY.119 | 0.001165 |
S | 845 | A845S | Gct | Tct | 33 | 33 | AY.75.1 | 0.00595 |
S | 845 | A845A | gcT | gcC | 33 | 33 | B.1.427 | 0.001666 |
S | 845 | A845S | Gct | Tct | 33 | 33 | B.1.621 | 0.002921 |
S | 845 | A845S | Gct | Tct | 32 | 32 | AY.5.3 | 0.010796 |
S | 845 | A845S | Gct | Tct | 31 | 31 | AY.30 | 0.012268 |
S | 845 | A845S | Gct | Tct | 31 | 31 | AY.39 | 0.000766 |
S | 845 | A845S | Gct | Tct | 31 | 31 | AY.9.2 | 0.001139 |
S | 845 | A845S | Gct | Tct | 29 | 29 | AY.61 | 0.003039 |
S | 845 | A845S | Gct | Tct | 25 | 25 | B.1.1.483 | 0.961538 |
S | 845 | A845T | Gct | Act | 24 | 24 | AY.43 | 0.000106 |
S | 845 | A845A | gcT | gcC | 24 | 24 | AY.47 | 0.000747 |
S | 845 | A845S | Gct | Tct | 24 | 24 | AY.98.1 | 0.001162 |
S | 845 | A845S | Gct | Tct | 24 | 24 | B.1.1.519 | 0.000953 |
S | 845 | A845S | Gct | Tct | 23 | 23 | AY.42 | 0.000925 |
S | 845 | A845S | Gct | Tct | 23 | 23 | B.1.617.1 | 0.002966 |
S | 845 | A845G | gCt | gGt | 20 | 22 | All | 0.000004 |
S | 845 | A845G | gCT | gGG | 1 | 22 | All | 0 |
S | 845 | A845G | gCT | gGA | 1 | 22 | All | 0 |
S | 845 | A845S | Gct | Tct | 22 | 22 | AY.5 | 0.000454 |
S | 845 | A845S | Gct | Tct | 22 | 22 | B.1.177.56 | 0.014686 |
S | 845 | A845P | Gct | Cct | 21 | 21 | B.1.617.2 | 0.000079 |
S | 845 | A845S | Gct | Tct | 20 | 20 | AY.45 | 0.002434 |
S | 845 | A845S | Gct | Tct | 20 | 20 | B.1.1.219 | 0.1 |
S | 845 | A845S | Gct | Tct | 20 | 20 | B.1.1.304 | 0.05618 |
S | 845 | A845S | Gct | Tct | 20 | 20 | B.1.239 | 0.02442 |
S | 845 | A845S | Gct | Tct | 19 | 19 | AY.16.1 | 0.008929 |
S | 845 | A845A | gcT | gcC | 18 | 19 | AY.4 | 0.000028 |
S | 845 | A845A | gcT | gcA | 1 | 19 | AY.4 | 0.000002 |
S | 845 | A845D | gCt | gAt | 19 | 19 | B | 0.002428 |
S | 845 | A845V | gCt | gTt | 19 | 19 | B.1.177 | 0.00025 |
S | 845 | A845S | Gct | Tct | 19 | 19 | P.1.16 | 0.007108 |
S | 845 | A845V | gCt | gTt | 18 | 18 | AY.4.4 | 0.007365 |
S | 845 | A845S | Gct | Tct | 18 | 18 | AY.69 | 0.00336 |
S | 845 | A845V | gCt | gTt | 18 | 18 | B.1.497 | 0.005666 |
S | 845 | A845V | gCt | gTt | 17 | 17 | B.1.177.17 | 0.013957 |
S | 845 | A845S | Gct | Tct | 17 | 17 | B.1.243 | 0.001183 |
S | 845 | A845S | Gct | Tct | 17 | 17 | B.1.575.1 | 0.041463 |
S | 845 | A845S | Gct | Tct | 17 | 17 | C.36.2 | 0.586207 |
S | 845 | A845S | Gct | Tct | 16 | 16 | A.2.5 | 0.007984 |
S | 845 | A845del1 | gcT | gc- | 15 | 16 | All | 0.000003 |
S | 845 | A845del1 | Gct | -ct | 1 | 16 | All | 0 |
S | 845 | A845S | Gct | Tct | 16 | 16 | P.1.1 | 0.005083 |
S | 845 | A845V | gCt | gTt | 15 | 15 | AY.44 | 0.000091 |
S | 845 | A845V | gCt | gTt | 15 | 15 | B.1.429 | 0.000353 |
S | 845 | A845S | Gct | Tct | 15 | 15 | B.1.525 | 0.001697 |
S | 845 | A845V | gCt | gTt | 15 | 15 | P.1 | 0.000236 |
S | 845 | A845V | gCt | gTt | 14 | 14 | AY.39 | 0.000346 |
S | 845 | A845del | GCT | --- | 14 | 14 | B.1.1.7 | 0.000013 |
S | 845 | A845T | Gct | Act | 13 | 14 | B.1.1.7 | 0.000012 |
S | 845 | A845T | GcT | AcC | 1 | 14 | B.1.1.7 | 0.000001 |
S | 845 | A845S | Gct | Tct | 13 | 13 | AY.36 | 0.001927 |
S | 845 | A845V | gCt | gTt | 13 | 13 | AY.5 | 0.000268 |
S | 845 | A845V | gCt | gTt | 13 | 13 | B.1.240 | 0.002802 |
S | 845 | A845V | gCt | gTt | 13 | 13 | B.1.243 | 0.000905 |
S | 845 | A845V | gCt | gTt | 13 | 13 | P.1.17 | 0.002103 |
S | 845 | A845S | Gct | Tct | 12 | 12 | B.1.1.305 | 0.046332 |
S | 845 | A845S | Gct | Tct | 12 | 12 | P.1.10 | 0.003234 |
S | 845 | A845S | Gct | Tct | 11 | 11 | AY.41 | 0.003233 |
S | 845 | A845S | Gct | Tct | 11 | 11 | AY.47 | 0.000342 |
S | 845 | A845S | Gct | Tct | 11 | 11 | B.1.177.44 | 0.005708 |
S | 845 | A845V | gCt | gTt | 11 | 11 | B.1.258.17 | 0.001144 |
S | 845 | A845S | Gct | Tct | 11 | 11 | P.1.15 | 0.002556 |
S | 845 | A845S | Gct | Tct | 11 | 11 | P.2 | 0.002053 |
S | 845 | A845S | Gct | Tct | 10 | 10 | AY.14 | 0.00088 |
S | 845 | A845S | Gct | Tct | 10 | 10 | AY.9 | 0.000676 |
S | 845 | A845S | Gct | Tct | 10 | 10 | AY.99.2 | 0.000922 |
S | 845 | A845V | gCt | gTt | 10 | 10 | B.1.1.198 | 0.014684 |
S | 845 | A845S | Gct | Tct | 10 | 10 | B.1.1.33 | 0.004209 |
S | 845 | A845T | Gct | Act | 10 | 10 | B.1.2 | 0.000088 |
S | 845 | A845V | gCt | gTt | 10 | 10 | B.1.351 | 0.000297 |
S | 845 | A845T | Gct | Act | 9 | 9 | AY.42 | 0.000362 |
S | 845 | A845S | Gct | Tct | 9 | 9 | AY.68 | 0.002464 |
S | 845 | A845S | Gct | Tct | 9 | 9 | AY.72 | 0.012245 |
S | 845 | A845S | Gct | Tct | 9 | 9 | AY.96 | 0.018672 |
S | 845 | A845S | Gct | Tct | 9 | 9 | AY.98 | 0.000711 |
S | 845 | A845V | gCt | gTt | 9 | 9 | B.1.1.33 | 0.003788 |
S | 845 | A845S | Gct | Tct | 9 | 9 | B.1.1.344 | 0.096774 |
S | 845 | A845S | Gct | Tct | 9 | 9 | B.1.298 | 0.019027 |
S | 845 | A845V | gCt | gTt | 9 | 9 | B.1.427 | 0.000454 |
S | 845 | A845S | Gct | Tct | 9 | 9 | B.1.438.1 | 0.000965 |
S | 845 | A845S | Gct | Tct | 9 | 9 | B.1.597 | 0.041667 |
S | 845 | A845S | Gct | Tct | 9 | 9 | R.1 | 0.00081 |
S | 845 | A845A | gcT | gcC | 8 | 8 | A | 0.003096 |
S | 845 | A845S | Gct | Tct | 8 | 8 | AY.117 | 0.000676 |
S | 845 | A845V | gCt | gTt | 7 | 8 | AY.117 | 0.000592 |
S | 845 | A845V | gCT | gTC | 1 | 8 | AY.117 | 0.000085 |
S | 845 | A845S | Gct | Tct | 8 | 8 | AY.12 | 0.002528 |
S | 845 | A845S | Gct | Tct | 8 | 8 | AY.121 | 0.001083 |
S | 845 | A845S | Gct | Tct | 8 | 8 | AY.34.1 | 0.00408 |
S | 845 | A845A | gcT | gcC | 6 | 8 | AY.43 | 0.000027 |
S | 845 | A845A | gcT | gcA | 1 | 8 | AY.43 | 0.000004 |
S | 845 | A845A | gcT | gcG | 1 | 8 | AY.43 | 0.000004 |
S | 845 | A845A | gcT | gcC | 8 | 8 | AY.46.5 | 0.001587 |
S | 845 | A845S | Gct | Tct | 8 | 8 | AY.55 | 0.007339 |
S | 845 | A845S | Gct | Tct | 8 | 8 | B.1.1.214 | 0.000444 |
S | 845 | A845S | Gct | Tct | 8 | 8 | B.1.1.368 | 0.024691 |
S | 845 | A845V | gCt | gTt | 8 | 8 | B.1.177.5 | 0.009938 |
S | 845 | A845S | Gct | Tct | 8 | 8 | B.1.221 | 0.000568 |
S | 845 | A845S | Gct | Tct | 8 | 8 | B.1.36.26 | 0.022857 |
S | 845 | A845V | gCt | gTt | 8 | 8 | B.1.526 | 0.000188 |
S | 845 | A845S | Gct | Tct | 8 | 8 | C.36.3 | 0.004538 |
S | 845 | A845S | Gct | Tct | 7 | 7 | AY.106 | 0.002344 |
S | 845 | A845S | Gct | Tct | 7 | 7 | AY.13 | 0.001127 |
S | 845 | A845V | gCt | gTt | 7 | 7 | AY.4.2 | 0.000152 |
S | 845 | A845V | gCt | gTt | 7 | 7 | AY.42 | 0.000282 |
S | 845 | A845V | gCt | gTt | 7 | 7 | AY.72 | 0.009524 |
S | 845 | A845S | Gct | Tct | 7 | 7 | AY.75 | 0.000392 |
S | 845 | A845V | gCt | gTt | 7 | 7 | AY.9.2 | 0.000257 |
S | 845 | A845S | Gct | Tct | 7 | 7 | B.1.1.216 | 0.006233 |
S | 845 | A845S | Gct | Tct | 7 | 7 | B.1.1.222 | 0.001428 |
S | 845 | A845S | Gct | Tct | 7 | 7 | B.1.1.28 | 0.002179 |
S | 845 | A845T | Gct | Act | 7 | 7 | B.1.1.301 | 0.008255 |
S | 845 | A845V | gCt | gTt | 7 | 7 | B.1.177.21 | 0.000535 |
S | 845 | A845S | Gct | Tct | 7 | 7 | B.1.369 | 0.001997 |
S | 845 | A845V | gCt | gTt | 7 | 7 | C.37 | 0.000812 |
S | 845 | A845S | Gct | Tct | 7 | 7 | P.1.12 | 0.003388 |
S | 845 | A845V | gCt | gTt | 6 | 6 | AY.102 | 0.000159 |
S | 845 | A845S | Gct | Tct | 6 | 6 | AY.113 | 0.000854 |
S | 845 | A845S | Gct | Tct | 6 | 6 | AY.116 | 0.001721 |
S | 845 | A845V | gCt | gTt | 6 | 6 | AY.29 | 0.000095 |
S | 845 | A845S | Gct | Tct | 6 | 6 | AY.3.1 | 0.000512 |
S | 845 | A845T | Gct | Act | 6 | 6 | AY.4 | 0.000009 |
S | 845 | A845S | Gct | Tct | 6 | 6 | AY.4.4 | 0.002455 |
S | 845 | A845S | Gct | Tct | 6 | 6 | AY.46 | 0.000624 |
S | 845 | A845S | Gct | Tct | 6 | 6 | AY.54 | 0.000572 |
S | 845 | A845P | Gct | Cct | 6 | 6 | AY.9.2 | 0.00022 |
S | 845 | A845V | gCt | gTt | 6 | 6 | B.1.1.255 | 0.018182 |
S | 845 | A845del1 | gcT | gc- | 6 | 6 | B.1.1.7 | 0.000005 |
S | 845 | A845S | Gct | Tct | 6 | 6 | B.1.36 | 0.000875 |
S | 845 | A845S | Gct | Tct | 6 | 6 | B.1.400 | 0.002574 |
S | 845 | A845V | gCt | gTt | 6 | 6 | P.1.2 | 0.006936 |
S | 845 | A845G | gCt | gGt | 3 | 5 | 0.166667 | |
S | 845 | A845G | gCT | gGG | 1 | 5 | 0.055556 | |
S | 845 | A845G | gCT | gGA | 1 | 5 | 0.055556 | |
S | 845 | A845V | gCt | gTt | 5 | 5 | AY.100 | 0.00023 |
S | 845 | A845S | Gct | Tct | 5 | 5 | AY.118 | 0.000313 |
S | 845 | A845T | Gct | Act | 5 | 5 | AY.44 | 0.00003 |
S | 845 | A845V | gCt | gTt | 5 | 5 | AY.46 | 0.00052 |
S | 845 | A845S | Gct | Tct | 5 | 5 | AY.48 | 0.002326 |
S | 845 | A845S | Gct | Tct | 5 | 5 | AY.62 | 0.002179 |
S | 845 | A845A | gcT | gcC | 3 | 5 | B.1 | 0.000027 |
S | 845 | A845A | gcT | gcA | 2 | 5 | B.1 | 0.000018 |
S | 845 | A845S | Gct | Tct | 5 | 5 | B.1.160 | 0.000156 |
S | 845 | A845V | gCt | gTt | 5 | 5 | B.1.177.51 | 0.022831 |
S | 845 | A845V | gCt | gTt | 5 | 5 | B.1.36 | 0.00073 |
S | 845 | A845S | Gct | Tct | 5 | 5 | B.1.427 | 0.000252 |
S | 845 | A845T | Gct | Act | 5 | 5 | B.1.617.2 | 0.000019 |
S | 845 | A845S | Gct | Tct | 5 | 5 | D.2 | 0.000375 |
S | 845 | A845S | Gct | Tct | 5 | 5 | P.1.7 | 0.001596 |
S | 845 | A845V | gCt | gTt | 5 | 5 | Q.2 | 0.003067 |
S | 845 | A845S | Gct | Tct | 2 | 4 | 0.111111 | |
S | 845 | A845S | GcT | TcA | 1 | 4 | 0.055556 | |
S | 845 | A845S | GcT | TcG | 1 | 4 | 0.055556 | |
S | 845 | A845S | Gct | Tct | 4 | 4 | A | 0.001548 |
S | 845 | A845del2 | gCT | g-- | 3 | 4 | All | 0.000001 |
S | 845 | A845del2 | GCt | --t | 1 | 4 | All | 0 |
S | 845 | A845S | Gct | Tct | 4 | 4 | AY.1 | 0.001583 |
S | 845 | A845V | gCt | gTt | 4 | 4 | AY.106 | 0.00134 |
S | 845 | A845S | Gct | Tct | 4 | 4 | AY.108 | 0.00441 |
S | 845 | A845A | gcT | gcC | 4 | 4 | AY.25 | 0.000024 |
S | 845 | A845V | gCt | gTt | 4 | 4 | AY.26 | 0.000113 |
S | 845 | A845A | gcT | gcC | 4 | 4 | AY.39 | 0.000099 |
S | 845 | A845del | GCT | --- | 4 | 4 | AY.43 | 0.000018 |
S | 845 | A845S | Gct | Tct | 4 | 4 | AY.5.4 | 0.001107 |
S | 845 | A845V | gCt | gTt | 4 | 4 | AY.6 | 0.000165 |
S | 845 | A845S | Gct | Tct | 4 | 4 | AY.64 | 0.002381 |
S | 845 | A845S | Gct | Tct | 4 | 4 | AY.88 | 0.003537 |
S | 845 | A845S | Gct | Tct | 4 | 4 | AY.99 | 0.004197 |
S | 845 | A845A | gcT | gcA | 2 | 4 | B.1.1 | 0.000036 |
S | 845 | A845A | gcT | gcG | 1 | 4 | B.1.1 | 0.000018 |
S | 845 | A845A | gcT | gcC | 1 | 4 | B.1.1 | 0.000018 |
S | 845 | A845T | Gct | Act | 4 | 4 | B.1.1.222 | 0.000816 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.1.232 | 0.00726 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.1.312 | 0.007648 |
S | 845 | A845V | gCt | gTt | 4 | 4 | B.1.1.428 | 0.037736 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.1.431 | 0.064516 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.1.464 | 0.005891 |
S | 845 | A845A | gcT | gcA | 4 | 4 | B.1.1.526 | 0.014184 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.177.86 | 0.000734 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.36.18 | 0.001681 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.396 | 0.002823 |
S | 845 | A845V | gCt | gTt | 4 | 4 | B.1.438.1 | 0.000429 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.540 | 0.038835 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.544 | 0.024096 |
S | 845 | A845S | Gct | Tct | 4 | 4 | B.1.558 | 0.018265 |
S | 845 | A845S | Gct | Tct | 4 | 4 | C.37 | 0.000464 |
S | 845 | A845V | gCt | gTt | 4 | 4 | D.2 | 0.0003 |
S | 845 | A845V | gCt | gTt | 3 | 3 | A.2.5.2 | 0.004717 |
S | 845 | A845C | GCt | TGt | 3 | 3 | All | 0.000001 |
S | 845 | A845T | Gct | Act | 3 | 3 | AY.103 | 0.000019 |
S | 845 | A845V | gCt | gTt | 3 | 3 | AY.119 | 0.000106 |
S | 845 | A845T | Gct | Act | 3 | 3 | AY.25 | 0.000018 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.27 | 0.000194 |
S | 845 | A845P | Gct | Cct | 3 | 3 | AY.34 | 0.000291 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.34 | 0.000291 |
S | 845 | A845V | gCt | gTt | 3 | 3 | AY.36 | 0.000445 |
S | 845 | A845D | gCt | gAt | 3 | 3 | AY.4 | 0.000005 |
S | 845 | A845D | gCt | gAt | 3 | 3 | AY.4.2 | 0.000065 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.4.2.1 | 0.000447 |
S | 845 | A845D | gCt | gAt | 3 | 3 | AY.43 | 0.000013 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.46.4 | 0.000494 |
S | 845 | A845V | gCt | gTt | 3 | 3 | AY.46.6 | 0.000217 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.53 | 0.000863 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.58 | 0.002722 |
S | 845 | A845A | gcT | gcA | 3 | 3 | AY.61 | 0.000314 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.74 | 0.000347 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.92 | 0.000862 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.93 | 0.000819 |
S | 845 | A845S | Gct | Tct | 3 | 3 | AY.99.1 | 0.004658 |
S | 845 | A845del | GCT | --- | 3 | 3 | B.1.1 | 0.000054 |
S | 845 | A845V | gCt | gTt | 3 | 3 | B.1.1.284 | 0.000322 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.1.318 | 0.000905 |
S | 845 | A845D | gCt | gAt | 3 | 3 | B.1.1.7 | 0.000003 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.177.21 | 0.000229 |
S | 845 | A845V | gCt | gTt | 3 | 3 | B.1.177.57 | 0.000843 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.177.57 | 0.000843 |
S | 845 | A845V | gCt | gTt | 3 | 3 | B.1.177.86 | 0.00055 |
S | 845 | A845A | gcT | gcC | 2 | 3 | B.1.2 | 0.000018 |
S | 845 | A845A | gcT | gcA | 1 | 3 | B.1.2 | 0.000009 |
S | 845 | A845V | gCt | gTt | 3 | 3 | B.1.221 | 0.000213 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.234 | 0.000396 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.36.1 | 0.003421 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.362 | 0.004622 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.437 | 0.0625 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.470 | 0.004213 |
S | 845 | A845V | gCt | gTt | 3 | 3 | B.1.525 | 0.000339 |
S | 845 | A845V | gCt | gTt | 3 | 3 | B.1.609 | 0.001438 |
S | 845 | A845G | gCt | gGt | 3 | 3 | B.1.617.2 | 0.000011 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.621.1 | 0.001517 |
S | 845 | A845S | Gct | Tct | 3 | 3 | B.1.628 | 0.001057 |
S | 845 | A845V | gCt | gTt | 3 | 3 | P.1.14 | 0.000143 |
S | 845 | A845S | Gct | Tct | 3 | 3 | P.1.17 | 0.000485 |
S | 845 | A845S | Gct | Tct | 3 | 3 | Q.1 | 0.000379 |
S | 845 | A845S | Gct | Tct | 3 | 3 | Q.7 | 0.003333 |
S | 845 | A845S | Gct | Tct | 3 | 3 | S.1 | 0.014851 |
S | 845 | A845C | GCt | TGt | 2 | 2 | 0.111111 | |
S | 845 | A845del | GCT | --- | 2 | 2 | 0.111111 | |
S | 845 | A845A | gcT | gcG | 1 | 2 | 0.055556 | |
S | 845 | A845A | gcT | gcA | 1 | 2 | 0.055556 | |
S | 845 | A845S | Gct | Tct | 2 | 2 | A.1 | 0.000564 |
S | 845 | A845S | Gct | Tct | 2 | 2 | A.2.5.2 | 0.003145 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AA.1 | 0.014493 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AD.2 | 0.000438 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AU.3 | 0.004219 |
S | 845 | A845A | gcT | gcC | 2 | 2 | AY.102 | 0.000053 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.107 | 0.000932 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.108 | 0.002205 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.118 | 0.000125 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.120 | 0.000074 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.120.1 | 0.000642 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.23.1 | 0.000835 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.29.1 | 0.000441 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.32 | 0.001065 |
S | 845 | A845T | Gct | Act | 2 | 2 | AY.35 | 0.000466 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.38 | 0.000999 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.39.1 | 0.000079 |
S | 845 | A845del1 | gcT | gc- | 2 | 2 | AY.4 | 0.000003 |
S | 845 | A845del | GCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
S | 845 | A845P | Gct | Cct | 2 | 2 | AY.43 | 0.000009 |
S | 845 | A845del | GCT | --- | 2 | 2 | AY.5 | 0.000041 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.52 | 0.001629 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.54 | 0.000191 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.55 | 0.001835 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.61 | 0.00021 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.63 | 0.000774 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.7.1 | 0.000225 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.75 | 0.000112 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.81 | 0.003984 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.85 | 0.000854 |
S | 845 | A845A | gcT | gcC | 2 | 2 | AY.93 | 0.000546 |
S | 845 | A845S | Gct | Tct | 2 | 2 | AY.94 | 0.000885 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.98 | 0.000158 |
S | 845 | A845V | gCt | gTt | 2 | 2 | AY.98.1 | 0.000097 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B | 0.000256 |
S | 845 | A845T | Gct | Act | 2 | 2 | B.1 | 0.000018 |
S | 845 | A845del | GCT | --- | 2 | 2 | B.1 | 0.000018 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.134 | 0.022727 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.1.157 | 0.001826 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.1.158 | 0.02439 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.1.176 | 0.000879 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.1.222 | 0.000408 |
S | 845 | A845del | GCT | --- | 2 | 2 | B.1.1.236 | 0.013793 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.261 | 0.017241 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.269 | 0.002706 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.294 | 0.002532 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.1.306 | 0.000877 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.348 | 0.001592 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.370 | 0.025316 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.448 | 0.004065 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.1.46 | 0.008734 |
S | 845 | A845T | Gct | Act | 2 | 2 | B.1.1.519 | 0.000079 |
S | 845 | A845D | gCt | gAt | 2 | 2 | B.1.1.519 | 0.000079 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.1.521 | 0.010695 |
S | 845 | A845del2 | gCT | g-- | 2 | 2 | B.1.1.7 | 0.000002 |
S | 845 | A845P | Gct | Cct | 2 | 2 | B.1.1.7 | 0.000002 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.160 | 0.000062 |
S | 845 | A845del | GCT | --- | 2 | 2 | B.1.177 | 0.000026 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.177.10 | 0.001756 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.177.20 | 0.003035 |
S | 845 | A845del1 | gcT | gc- | 2 | 2 | B.1.177.54 | 0.001213 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.177.81 | 0.000379 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.240 | 0.000431 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.241 | 0.001623 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.258 | 0.000133 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.258.11 | 0.000793 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.3 | 0.005236 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.351.2 | 0.000605 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.351.3 | 0.001753 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.351.3 | 0.001753 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.36.17 | 0.000988 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.36.17 | 0.000988 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.36.29 | 0.001035 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.36.29 | 0.001035 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.367 | 0.001585 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.396 | 0.001411 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.416 | 0.002538 |
S | 845 | A845A | gcT | gcA | 2 | 2 | B.1.429 | 0.000047 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.470 | 0.002809 |
S | 845 | A845G | gCt | gGt | 2 | 2 | B.1.526 | 0.000047 |
S | 845 | A845D | gCt | gAt | 2 | 2 | B.1.575 | 0.000607 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.576 | 0.001813 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.595 | 0.000522 |
S | 845 | A845V | gCt | gTt | 2 | 2 | B.1.596 | 0.000174 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.609 | 0.000959 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.623 | 0.001073 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.9 | 0.012346 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.1.91 | 0.004149 |
S | 845 | A845S | Gct | Tct | 2 | 2 | B.10 | 0.016529 |
S | 845 | A845S | Gct | Tct | 2 | 2 | C.29 | 0.125 |
S | 845 | A845S | Gct | Tct | 2 | 2 | N.5 | 0.003534 |
S | 845 | A845A | gcT | gcA | 2 | 2 | P.1 | 0.000032 |
S | 845 | A845V | gCt | gTt | 2 | 2 | P.1.1 | 0.000635 |
S | 845 | A845S | Gct | Tct | 2 | 2 | Q.3 | 0.00029 |
S | 845 | A845W | GCT | TGG | 1 | 1 | 0.055556 | |
S | 845 | A845X | GCT | TGA | 1 | 1 | 0.055556 | |
S | 845 | A845del | GCT | --- | 1 | 1 | A | 0.000387 |
S | 845 | A845V | gCt | gTt | 1 | 1 | A.1 | 0.000282 |
S | 845 | A845S | Gct | Tct | 1 | 1 | A.2.4 | 0.003367 |
S | 845 | A845S | Gct | Tct | 1 | 1 | A.3 | 0.002096 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AA.7 | 0.009174 |
S | 845 | A845del | GCT | --- | 1 | 1 | AH.3 | 0.003802 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AL.1 | 0.012987 |
S | 845 | A845W | GCT | TGG | 1 | 1 | All | 0 |
S | 845 | A845X | GCT | TGA | 1 | 1 | All | 0 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AM.4 | 0.003571 |
S | 845 | A845T | Gct | Act | 1 | 1 | AM.4 | 0.003571 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AT.1 | 0.005128 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AU.2 | 0.002421 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AU.3 | 0.00211 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.101 | 0.00049 |
S | 845 | A845G | gCt | gGt | 1 | 1 | AY.103 | 0.000006 |
S | 845 | A845A | gcT | gcC | 1 | 1 | AY.103 | 0.000006 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.105 | 0.000643 |
S | 845 | A845G | gCt | gGt | 1 | 1 | AY.108 | 0.001103 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.109 | 0.00074 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.110 | 0.000113 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.111 | 0.000183 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.115 | 0.005208 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.116.1 | 0.000311 |
S | 845 | A845del1 | gcT | gc- | 1 | 1 | AY.117 | 0.000085 |
S | 845 | A845del | GCT | --- | 1 | 1 | AY.120 | 0.000037 |
S | 845 | A845D | gCt | gAt | 1 | 1 | AY.120 | 0.000037 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.120.1 | 0.000321 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.120.2 | 0.001285 |
S | 845 | A845A | gcT | gcA | 1 | 1 | AY.13 | 0.000161 |
S | 845 | A845A | gcT | gcC | 1 | 1 | AY.14 | 0.000088 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.16 | 0.00038 |
S | 845 | A845A | gcT | gcA | 1 | 1 | AY.16.1 | 0.00047 |
S | 845 | A845T | Gct | Act | 1 | 1 | AY.16.1 | 0.00047 |
S | 845 | A845A | gcT | gcC | 1 | 1 | AY.2 | 0.000356 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.2 | 0.000356 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.2 | 0.000356 |
S | 845 | A845A | gcT | gcA | 1 | 1 | AY.20 | 0.000039 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.20 | 0.000039 |
S | 845 | A845T | Gct | Act | 1 | 1 | AY.20 | 0.000039 |
S | 845 | A845G | gCt | gGt | 1 | 1 | AY.20 | 0.000039 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.21 | 0.001898 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.23 | 0.00007 |
S | 845 | A845D | gCt | gAt | 1 | 1 | AY.25 | 0.000006 |
S | 845 | A845del | GCT | --- | 1 | 1 | AY.25 | 0.000006 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.27 | 0.000065 |
S | 845 | A845A | gcT | gcC | 1 | 1 | AY.3 | 0.00001 |
S | 845 | A845G | gCt | gGt | 1 | 1 | AY.3 | 0.00001 |
S | 845 | A845del | GCT | --- | 1 | 1 | AY.3.1 | 0.000085 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.32 | 0.000532 |
S | 845 | A845G | gCt | gGt | 1 | 1 | AY.33 | 0.000067 |
S | 845 | A845A | gcT | gcC | 1 | 1 | AY.33 | 0.000067 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.35 | 0.000233 |
S | 845 | A845A | gcT | gcC | 1 | 1 | AY.36 | 0.000148 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.37 | 0.000316 |
S | 845 | A845del2 | gCT | g-- | 1 | 1 | AY.4 | 0.000002 |
S | 845 | A845del | GCT | --- | 1 | 1 | AY.4 | 0.000002 |
S | 845 | A845G | gCt | gGt | 1 | 1 | AY.4 | 0.000002 |
S | 845 | A845A | gcT | gcC | 1 | 1 | AY.4.2 | 0.000022 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 845 | A845A | gcT | gcG | 1 | 1 | AY.4.5 | 0.000107 |
S | 845 | A845G | gCt | gGt | 1 | 1 | AY.4.5 | 0.000107 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.4.5 | 0.000107 |
S | 845 | A845del1 | gcT | gc- | 1 | 1 | AY.4.5 | 0.000107 |
S | 845 | A845D | gCt | gAt | 1 | 1 | AY.44 | 0.000006 |
S | 845 | A845P | Gct | Cct | 1 | 1 | AY.44 | 0.000006 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.46.1 | 0.001027 |
S | 845 | A845del | GCT | --- | 1 | 1 | AY.46.2 | 0.000635 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.46.2 | 0.000635 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.46.4 | 0.000165 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.46.5 | 0.000198 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.49 | 0.003195 |
S | 845 | A845G | gCt | gGt | 1 | 1 | AY.5 | 0.000021 |
S | 845 | A845T | Gct | Act | 1 | 1 | AY.5 | 0.000021 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.51 | 0.000909 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.57 | 0.000656 |
S | 845 | A845T | Gct | Act | 1 | 1 | AY.6 | 0.000041 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.60 | 0.000938 |
S | 845 | A845A | gcT | gcA | 1 | 1 | AY.60 | 0.000938 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.63 | 0.000387 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.65 | 0.000533 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.65 | 0.000533 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.69 | 0.000187 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.7.2 | 0.000559 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.73 | 0.000665 |
S | 845 | A845del | GCT | --- | 1 | 1 | AY.75 | 0.000056 |
S | 845 | A845A | gcT | gcA | 1 | 1 | AY.75 | 0.000056 |
S | 845 | A845D | gCt | gAt | 1 | 1 | AY.75 | 0.000056 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.75.1 | 0.00018 |
S | 845 | A845T | Gct | Act | 1 | 1 | AY.77 | 0.001127 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.79 | 0.001211 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.82 | 0.001357 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.83 | 0.001724 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.83 | 0.001724 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.84 | 0.000437 |
S | 845 | A845D | gCt | gAt | 1 | 1 | AY.84 | 0.000437 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.87 | 0.000833 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.87 | 0.000833 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.89 | 0.004902 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.9 | 0.000068 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.9.1 | 0.000084 |
S | 845 | A845del2 | GCt | --t | 1 | 1 | AY.9.2 | 0.000037 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.90 | 0.000684 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.91 | 0.00073 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.92 | 0.000287 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.93 | 0.000273 |
S | 845 | A845S | Gct | Tct | 1 | 1 | AY.95 | 0.000761 |
S | 845 | A845del | GCT | --- | 1 | 1 | AY.98.1 | 0.000048 |
S | 845 | A845V | gCt | gTt | 1 | 1 | AY.99.1 | 0.001553 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B | 0.000128 |
S | 845 | A845G | gCt | gGt | 1 | 1 | B.1 | 0.000009 |
S | 845 | A845D | gCt | gAt | 1 | 1 | B.1.1 | 0.000018 |
S | 845 | A845P | Gct | Cct | 1 | 1 | B.1.1 | 0.000018 |
S | 845 | A845T | Gct | Act | 1 | 1 | B.1.1 | 0.000018 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.1 | 0.000327 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.111 | 0.014706 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.133 | 0.008475 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.135 | 0.004695 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.141 | 0.002012 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.157 | 0.000913 |
S | 845 | A845A | gcT | gcC | 1 | 1 | B.1.1.159 | 0.004673 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.161 | 0.003534 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.170 | 0.001247 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.174 | 0.003378 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.189 | 0.001513 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.198 | 0.001468 |
S | 845 | A845T | Gct | Act | 1 | 1 | B.1.1.204 | 0.00304 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.204 | 0.00304 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.205 | 0.003717 |
S | 845 | A845A | gcT | gcC | 1 | 1 | B.1.1.214 | 0.000055 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.220 | 0.001859 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.240 | 0.004695 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.275 | 0.011236 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.275 | 0.011236 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.277 | 0.000759 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.306 | 0.000438 |
S | 845 | A845A | gcT | gcA | 1 | 1 | B.1.1.312 | 0.001912 |
S | 845 | A845T | Gct | Act | 1 | 1 | B.1.1.318 | 0.000302 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.326 | 0.001761 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.326 | 0.001761 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.328 | 0.016949 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.349 | 0.010309 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.359 | 0.027778 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.362 | 0.005618 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.365 | 0.005587 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.369 | 0.000446 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.37 | 0.000193 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.370 | 0.012658 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.39 | 0.00051 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.409 | 0.002833 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.412 | 0.007634 |
S | 845 | A845C | GCt | TGt | 1 | 1 | B.1.1.420 | 0.001006 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.420 | 0.001006 |
S | 845 | A845G | gCt | gGt | 1 | 1 | B.1.1.420 | 0.001006 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.420 | 0.001006 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.432 | 0.001266 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.47 | 0.005348 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.5 | 0.008333 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.519 | 0.00004 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.52 | 0.012195 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.523 | 0.001563 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.1.525 | 0.005464 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.526 | 0.003546 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.528 | 0.004808 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.62 | 0.027027 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.63 | 0.000386 |
S | 845 | A845G | gCt | gGt | 1 | 1 | B.1.1.7 | 0.000001 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.1.70 | 0.000341 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.110 | 0.004525 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.139 | 0.000733 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.160.12 | 0.00641 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.160.15 | 0.00495 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.169 | 0.014925 |
S | 845 | A845A | gcT | gcG | 1 | 1 | B.1.177 | 0.000013 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.177.10 | 0.000878 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.12 | 0.000152 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.177.12 | 0.000152 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.177.16 | 0.000664 |
S | 845 | A845del | GCT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
S | 845 | A845del1 | gcT | gc- | 1 | 1 | B.1.177.18 | 0.00116 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.177.23 | 0.003236 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.177.32 | 0.00135 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.35 | 0.000691 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.38 | 0.010417 |
S | 845 | A845del1 | gcT | gc- | 1 | 1 | B.1.177.4 | 0.000211 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.4 | 0.000211 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.177.4 | 0.000211 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.177.43 | 0.001477 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.53 | 0.002392 |
S | 845 | A845del | GCT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.177.60 | 0.000218 |
S | 845 | A845del | GCT | --- | 1 | 1 | B.1.177.60 | 0.000218 |
S | 845 | A845del | GCT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.69 | 0.001484 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.75 | 0.001041 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.77 | 0.000726 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.177.83 | 0.001481 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.85 | 0.005435 |
S | 845 | A845A | gcT | gcC | 1 | 1 | B.1.177.86 | 0.000183 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.177.87 | 0.000728 |
S | 845 | A845del | GCT | --- | 1 | 1 | B.1.179 | 0.003759 |
S | 845 | A845del | GCT | --- | 1 | 1 | B.1.2 | 0.000009 |
S | 845 | A845D | gCt | gAt | 1 | 1 | B.1.2 | 0.000009 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.210 | 0.002132 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.214.2 | 0.0006 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.232 | 0.000537 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.234 | 0.000132 |
S | 845 | A845D | gCt | gAt | 1 | 1 | B.1.234 | 0.000132 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.237 | 0.004975 |
S | 845 | A845A | gcT | gcA | 1 | 1 | B.1.243 | 0.00007 |
S | 845 | A845del | GCT | --- | 1 | 1 | B.1.258 | 0.000067 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.258.10 | 0.011364 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.279 | 0.000514 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.305 | 0.002151 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.320 | 0.001245 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.324 | 0.001605 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.324 | 0.001605 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.336 | 0.002439 |
S | 845 | A845del | GCT | --- | 1 | 1 | B.1.351 | 0.00003 |
S | 845 | A845P | Gct | Cct | 1 | 1 | B.1.351 | 0.00003 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.351.2 | 0.000303 |
S | 845 | A845A | gcT | gcA | 1 | 1 | B.1.36 | 0.000146 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.36.10 | 0.004785 |
S | 845 | A845del1 | gcT | gc- | 1 | 1 | B.1.36.18 | 0.00042 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.36.36 | 0.000602 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.36.39 | 0.002217 |
S | 845 | A845A | gcT | gcC | 1 | 1 | B.1.369 | 0.000285 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.375 | 0.00082 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.389 | 0.001002 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.389 | 0.001002 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.398 | 0.002976 |
S | 845 | A845del1 | Gct | -ct | 1 | 1 | B.1.399 | 0.001934 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.400 | 0.000429 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.420 | 0.010417 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.428.3 | 0.012821 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.433 | 0.003195 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.44 | 0.008333 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.441 | 0.009615 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.441 | 0.009615 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.456 | 0.003268 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.466.2 | 0.000391 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.471 | 0.002732 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.474 | 0.001901 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.511 | 0.034483 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.515 | 0.014493 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.517 | 0.000427 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.524 | 0.001406 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.546 | 0.003704 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.561 | 0.000397 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.564.1 | 0.001577 |
S | 845 | A845G | gCt | gGt | 1 | 1 | B.1.565 | 0.00081 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.565 | 0.00081 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.568 | 0.001111 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.575 | 0.000303 |
S | 845 | A845D | gCt | gAt | 1 | 1 | B.1.577 | 0.000687 |
S | 845 | A845A | gcT | gcA | 1 | 1 | B.1.596 | 0.000087 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.597 | 0.00463 |
S | 845 | A845A | gcT | gcC | 1 | 1 | B.1.609 | 0.000479 |
S | 845 | A845A | gcT | gcC | 1 | 1 | B.1.617.1 | 0.000129 |
S | 845 | A845D | gCt | gAt | 1 | 1 | B.1.617.2 | 0.000004 |
S | 845 | A845del | GCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.617.3 | 0.002985 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.618 | 0.004032 |
S | 845 | A845A | gcT | gcA | 1 | 1 | B.1.619 | 0.000871 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.619 | 0.000871 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.619.1 | 0.000641 |
S | 845 | A845A | gcT | gcA | 1 | 1 | B.1.620 | 0.000946 |
S | 845 | A845A | gcT | gcC | 1 | 1 | B.1.621 | 0.000089 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.630 | 0.005236 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.1.637 | 0.000073 |
S | 845 | A845A | gcT | gcA | 1 | 1 | B.1.637 | 0.000073 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.1.93 | 0.000934 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.11 | 0.005128 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.29 | 0.003509 |
S | 845 | A845V | gCt | gTt | 1 | 1 | B.4.5 | 0.011905 |
S | 845 | A845S | Gct | Tct | 1 | 1 | B.6.6 | 0.000889 |
S | 845 | A845S | Gct | Tct | 1 | 1 | C.1 | 0.002392 |
S | 845 | A845S | Gct | Tct | 1 | 1 | C.16 | 0.00106 |
S | 845 | A845S | Gct | Tct | 1 | 1 | C.17 | 0.055556 |
S | 845 | A845S | Gct | Tct | 1 | 1 | C.35 | 0.000774 |
S | 845 | A845V | gCt | gTt | 1 | 1 | C.36 | 0.000911 |
S | 845 | A845S | Gct | Tct | 1 | 1 | C.36 | 0.000911 |
S | 845 | A845V | gCt | gTt | 1 | 1 | C.36.3 | 0.000567 |
S | 845 | A845V | gCt | gTt | 1 | 1 | C.37.1 | 0.002618 |
S | 845 | A845V | gCt | gTt | 1 | 1 | C.38 | 0.008065 |
S | 845 | A845V | gCt | gTt | 1 | 1 | C.6 | 0.037037 |
S | 845 | A845A | gcT | gcC | 1 | 1 | D.2 | 0.000075 |
S | 845 | A845S | Gct | Tct | 1 | 1 | L.3 | 0.003546 |
S | 845 | A845S | Gct | Tct | 1 | 1 | N.9 | 0.005952 |
S | 845 | A845T | Gct | Act | 1 | 1 | P.1 | 0.000016 |
S | 845 | A845D | gCt | gAt | 1 | 1 | P.1 | 0.000016 |
S | 845 | A845del | GCT | --- | 1 | 1 | P.1.13 | 0.000898 |
S | 845 | A845del | GCT | --- | 1 | 1 | P.1.15 | 0.000232 |
S | 845 | A845S | Gct | Tct | 1 | 1 | P.1.17.1 | 0.000875 |
S | 845 | A845S | Gct | Tct | 1 | 1 | P.1.2 | 0.001156 |
S | 845 | A845V | gCt | gTt | 1 | 1 | P.2 | 0.000187 |
S | 845 | A845S | Gct | Tct | 1 | 1 | P.3 | 0.001595 |
S | 845 | A845S | Gct | Tct | 1 | 1 | P.7 | 0.004367 |
S | 845 | A845S | Gct | Tct | 1 | 1 | Q.2 | 0.000613 |
S | 845 | A845del | GCT | --- | 1 | 1 | Q.2 | 0.000613 |
S | 845 | A845V | gCt | gTt | 1 | 1 | Q.4 | 0.000455 |
S | 845 | A845A | gcT | gcG | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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