CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 842 & Codon = Tgt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S842G842CnonsynGgtTgt3939124086-24088

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S842G842CGgtTgt3939All0.000007
S842G842CGgtTgt77B.10.000064
S842G842CGgtTgt66B.1.1.70.000005
S842G842CGgtTgt44AY.250.000024
S842G842CGgtTgt33AY.40.000005
S842G842CGgtTgt33AY.440.000018
S842G842CGgtTgt22AY.1030.000012
S842G842CGgtTgt22AY.980.000158
S842G842CGgtTgt22B.1.20.000018
S842G842CGgtTgt22B.1.5960.000174
S842G842CGgtTgt110.055556
S842G842CGgtTgt11AY.1020.000027
S842G842CGgtTgt11AY.4.20.000022
S842G842CGgtTgt11AY.750.000056
S842G842CGgtTgt11B.1.617.20.000004
S842G842CGgtTgt11B.1.6210.000089
S842G842CGgtTgt11P.1.10.000318
S842G842CGgtTgt11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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