CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 840

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S840C840CsyntgCtgT12341234124080-24082
S840C840deldelTGC---4747124080-24082
S840C840FnonsyntGctTc15140.93333324080-24082
S840C840FnonsyntGCtTT1510.066666724080-24082
S840C840SnonsyntGctCc1260.524080-24082
S840C840SnonsynTgcAgc1240.33333324080-24082
S840C840SnonsyntGCtCT1210.083333324080-24082
S840C840SnonsynTgCAgT1210.083333324080-24082
S840C840GnonsynTgcGgc1170.63636424080-24082
S840C840GnonsynTgCGgA1120.18181824080-24082
S840C840GnonsynTgCGgT1110.090909124080-24082
S840C840GnonsynTgCGgG1110.090909124080-24082
S840C840RnonsynTgcCgc760.85714324080-24082
S840C840YnonsyntGctAc760.85714324080-24082
S840C840XnonsyntgCtgA750.71428624080-24082
S840C840YnonsyntGCtAT710.14285724080-24082
S840C840RnonsynTgCAgA710.14285724080-24082
S840C840XnonsyntGCtAA710.14285724080-24082
S840C840XnonsyntGCtAG710.14285724080-24082
S840C840WnonsyntgCtgG33124080-24082
S840C840EnonsynTGCGAG210.524080-24082
S840C840EnonsynTGCGAA210.524080-24082
S840C840InonsynTGcATc11124080-24082
S840C840HnonsynTGcCAc11124080-24082
S840C840del2deltGCt--11124080-24082
S840C840DnonsynTGCGAT11124080-24082

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S840C840CtgCtgT12341234All0.000236
S840C840CtgCtgT285285AY.4.20.006181
S840C840CtgCtgT133133AY.1190.004696
S840C840CtgCtgT120120B.1.20.001057
S840C840CtgCtgT102102B.1.1.70.000091
S840C840CtgCtgT6060AY.250.000361
S840C840CtgCtgT5454AY.40.000084
S840C840delTGC---4747All0.000009
S840C840CtgCtgT4646B.1.617.20.000173
S840C840CtgCtgT4141AY.200.001593
S840C840CtgCtgT3939AY.690.00728
S840C840CtgCtgT3838AY.860.031535
S840C840CtgCtgT3131C.350.023994
S840C840CtgCtgT2626B.1.3181
S840C840CtgCtgT2424B.1.10.000435
S840C840FtGctTc1415All0.000003
S840C840FtGCtTT115All0
S840C840CtgCtgT1515B.10.000137
S840C840CtgCtgT1414AY.1020.000371
S840C840CtgCtgT1414AY.430.000062
S840C840CtgCtgT1313AY.70.002548
S840C840StGctCc612All0.000001
S840C840STgcAgc412All0.000001
S840C840STgCAgT112All0
S840C840StGCtCT112All0
S840C840CtgCtgT1212AY.30.000119
S840C840GTgcGgc711All0.000001
S840C840GTgCGgA211All0
S840C840GTgCGgT111All0
S840C840GTgCGgG111All0
S840C840delTGC---99B.1.1.70.000008
S840C840YtGctAc67All0.000001
S840C840RTgcCgc67All0.000001
S840C840XtgCtgA57All0.000001
S840C840XtGCtAA17All0
S840C840XtGCtAG17All0
S840C840YtGCtAT17All0
S840C840RTgCAgA17All0
S840C840CtgCtgT77AY.1000.000322
S840C840CtgCtgT77AY.5.30.002362
S840C840CtgCtgT66AY.1030.000037
S840C840CtgCtgT66B.1.1770.000079
S840C840CtgCtgT66B.1.4290.000141
S840C840CtgCtgT66P.1.40.005859
S840C840CtgCtgT55B.1.1.280.001556
S840C840CtgCtgT55B.1.2430.000348
S840C840CtgCtgT440.222222
S840C840CtgCtgT44AY.10.001583
S840C840CtgCtgT44AY.420.000161
S840C840delTGC---44AY.430.000018
S840C840CtgCtgT44AY.46.10.004107
S840C840FtGctTc44B.10.000037
S840C840CtgCtgT44B.1.1.1210.009709
S840C840CtgCtgT44B.1.1.4340.001394
S840C840CtgCtgT44B.1.5260.000094
S840C840CtgCtgT44C.110.042553
S840C840CtgCtgT44P.10.000063
S840C840WtgCtgG33All0.000001
S840C840CtgCtgT33AY.1130.000427
S840C840CtgCtgT33AY.390.000074
S840C840XtGCtAA13AY.40.000002
S840C840XtgCtgA13AY.40.000002
S840C840XtGCtAG13AY.40.000002
S840C840CtgCtgT33AY.730.001996
S840C840CtgCtgT33AY.840.001312
S840C840delTGC---33B.1.1.2360.02069
S840C840RTgcCgc33B.1.1.70.000003
S840C840CtgCtgT33B.1.6210.000266
S840C840CtgCtgT33P.1.140.000143
S840C840YtGCtAT120.055556
S840C840FtGctTc120.055556
S840C840FtGCtTT120.055556
S840C840YtGctAc120.055556
S840C840CtgCtgT22A.10.000564
S840C840CtgCtgT22AE.80.000978
S840C840ETGCGAG12All0
S840C840ETGCGAA12All0
S840C840GTgcGgc12AY.1100.000113
S840C840GTgCGgA12AY.1100.000113
S840C840CtgCtgT22AY.260.000057
S840C840CtgCtgT22AY.330.000134
S840C840STgcAgc12AY.330.000067
S840C840STgCAgT12AY.330.000067
S840C840delTGC---22AY.40.000003
S840C840ETGCGAA12AY.40.000002
S840C840GTgCGgA12AY.40.000002
S840C840ETGCGAG12AY.40.000002
S840C840GTgCGgG12AY.40.000002
S840C840delTGC---22AY.4.50.000215
S840C840WtgCtgG22AY.430.000009
S840C840CtgCtgT22AY.440.000012
S840C840CtgCtgT22AY.46.60.000144
S840C840CtgCtgT22AY.470.000062
S840C840CtgCtgT22AY.75.10.000361
S840C840delTGC---22B.10.000018
S840C840GTgcGgc22B.10.000018
S840C840StGctCc12B.10.000009
S840C840STgcAgc12B.10.000009
S840C840delTGC---22B.1.10.000036
S840C840GTgcGgc22B.1.10.000036
S840C840CtgCtgT22B.1.1.3720.001377
S840C840CtgCtgT22B.1.1600.000062
S840C840delTGC---22B.1.177.630.005405
S840C840StGctCc22B.1.20.000018
S840C840FtGctTc22B.1.20.000018
S840C840CtgCtgT22B.1.351.20.000605
S840C840CtgCtgT22B.1.3960.001411
S840C840delTGC---22B.1.617.20.000008
S840C840CtgCtgT22P.20.000373
S840C840CtgCtgT22R.10.00018
S840C840delTGC---11A0.000387
S840C840CtgCtgT11A.20.000662
S840C840FtGctTc11A.20.000662
S840C840CtgCtgT11A.2.50.000499
S840C840CtgCtgT11A.270.001656
S840C840ITGcATc11All0
S840C840DTGCGAT11All0
S840C840del2tGCt--11All0
S840C840HTGcCAc11All0
S840C840ITGcATc11AY.1030.000006
S840C840FtGctTc11AY.1030.000006
S840C840STgcAgc11AY.1030.000006
S840C840CtgCtgT11AY.1070.000466
S840C840XtgCtgA11AY.1100.000113
S840C840del2tGCt--11AY.1170.000085
S840C840delTGC---11AY.1190.000035
S840C840CtgCtgT11AY.1200.000037
S840C840delTGC---11AY.1200.000037
S840C840CtgCtgT11AY.160.00038
S840C840CtgCtgT11AY.230.00007
S840C840CtgCtgT11AY.270.000065
S840C840XtgCtgA11AY.30.00001
S840C840CtgCtgT11AY.300.000396
S840C840FtGctTc11AY.40.000002
S840C840WtgCtgG11AY.40.000002
S840C840GTgcGgc11AY.430.000004
S840C840CtgCtgT11AY.450.000122
S840C840delTGC---11AY.46.20.000635
S840C840CtgCtgT11AY.46.50.000198
S840C840CtgCtgT11AY.50.000021
S840C840CtgCtgT11AY.570.000656
S840C840CtgCtgT11AY.740.000116
S840C840delTGC---11AY.750.000056
S840C840RTgcCgc11AY.840.000437
S840C840YtGctAc11AY.840.000437
S840C840HTGcCAc11AY.840.000437
S840C840CtgCtgT11AY.9.20.000037
S840C840delTGC---11AY.9.20.000037
S840C840CtgCtgT11AY.980.000079
S840C840delTGC---11AY.98.10.000048
S840C840STgcAgc11AY.99.20.000092
S840C840RTgcCgc11B.10.000009
S840C840DTGCGAT11B.1.10.000018
S840C840GTgCGgT11B.1.1.2200.001859
S840C840StGctCc11B.1.1.280.000311
S840C840CtgCtgT11B.1.1.2980.000862
S840C840CtgCtgT11B.1.1.3160.000925
S840C840CtgCtgT11B.1.1.4090.002833
S840C840delTGC---11B.1.1.4090.002833
S840C840YtGctAc11B.1.1.70.000001
S840C840FtGctTc11B.1.1.70.000001
S840C840CtgCtgT11B.1.1.700.000341
S840C840CtgCtgT11B.1.1430.021277
S840C840delTGC---11B.1.1770.000013
S840C840StGctCc11B.1.1770.000013
S840C840XtgCtgA11B.1.1770.000013
S840C840delTGC---11B.1.177.170.000821
S840C840CtgCtgT11B.1.177.440.000519
S840C840CtgCtgT11B.1.177.60.000977
S840C840CtgCtgT11B.1.177.600.000218
S840C840delTGC---11B.1.20.000009
S840C840YtGctAc11B.1.20.000009
S840C840CtgCtgT11B.1.2060.000816
S840C840YtGctAc11B.1.2210.000071
S840C840CtgCtgT11B.1.2210.000071
S840C840CtgCtgT11B.1.2320.000537
S840C840delTGC---11B.1.2580.000067
S840C840GTgcGgc11B.1.258.100.011364
S840C840CtgCtgT11B.1.3110.000275
S840C840CtgCtgT11B.1.36.270.000763
S840C840delTGC---11B.1.3690.000285
S840C840CtgCtgT11B.1.3780.006849
S840C840CtgCtgT11B.1.4000.000429
S840C840CtgCtgT11B.1.4270.00005
S840C840CtgCtgT11B.1.466.20.000391
S840C840FtGctTc11B.1.5610.000397
S840C840RTgCAgA11B.1.5680.001111
S840C840CtgCtgT11B.1.5820.000491
S840C840CtgCtgT11B.1.5960.000087
S840C840XtgCtgA11B.1.5960.000087
S840C840StGCtCT11B.1.617.20.000004
S840C840FtGctTc11B.1.617.20.000004
S840C840delTGC---11B.1.6210.000089
S840C840CtgCtgT11B.1.6370.000073
S840C840delTGC---11B.1.6380.052632
S840C840StGctCc11B.30.000831
S840C840CtgCtgT11D.20.000075
S840C840delTGC---11P.10.000016
S840C840FtGctTc11P.1.10.000318
S840C840delTGC---11P.1.130.000898
S840C840RTgcCgc11P.1.140.000048
S840C840delTGC---11P.1.150.000232
S840C840YtGctAc11Q.10.000126
S840C840delTGC---11Q.20.000613