CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 838

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S838G838GsynggTggC15139150360.99319624074-24076
S838G838GsynggTggA15139960.0063412424074-24076
S838G838GsynggTggG1513970.00046238224074-24076
S838G838SnonsynGgtAgt6226210.99839224074-24076
S838G838SnonsynGGtTCt62210.0016077224074-24076
S838G838DnonsyngGtgAt1181170.99152524074-24076
S838G838DnonsyngGTgAC11810.0084745824074-24076
S838G838VnonsyngGtgTt5353124074-24076
S838G838deldelGGT---5151124074-24076
S838G838CnonsynGgtTgt30290.96666724074-24076
S838G838CnonsynGgTTgC3010.033333324074-24076
S838G838RnonsynGgtCgt19140.73684224074-24076
S838G838RnonsynGgTCgG1940.21052624074-24076
S838G838RnonsynGgTAgA1910.052631624074-24076
S838G838del1delGgt-gt210.524074-24076
S838G838del1delGgT-gC210.524074-24076
S838G838KnonsynGGTAAA11124074-24076
S838G838AnonsyngGtgCt11124074-24076
S838G838NnonsynGGtAAt11124074-24076
S838G838EnonsyngGTgAA11124074-24076

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S838G838GggTggC1503615139All0.002876
S838G838GggTggA9615139All0.000018
S838G838GggTggG715139All0.000001
S838G838GggTggC1410214102B.1.2430.981282
S838G838SGgtAgt621622All0.000119
S838G838SGGtTCt1622All0
S838G838SGgtAgt510510AY.250.003068
S838G838GggTggC328331B.10.003004
S838G838GggTggA3331B.10.000027
S838G838GggTggC149149B.1.6020.973856
S838G838DgGtgAt117118All0.000022
S838G838DgGTgAC1118All0
S838G838GggTggA8989B.1.1.2751
S838G838GggTggC6969B.1.243.21
S838G838GggTggC6868AY.330.004541
S838G838GggTggC5454AY.1210.007307
S838G838VgGtgTt5353All0.00001
S838G838delGGT---5151All0.00001
S838G838GggTggC4545B.1.243.11
S838G838GggTggC3939B.1.20.000343
S838G838CGgtTgt2930All0.000006
S838G838CGgTTgC130All0
S838G838GggTggC2424B.1.1690.358209
S838G838DgGtgAt2020AY.730.013307
S838G838RGgtCgt1419All0.000003
S838G838RGgTCgG419All0.000001
S838G838RGgTAgA119All0
S838G838GggTggC1919B.1.5960.001656
S838G838DgGtgAt1616AY.40.000025
S838G838SGgtAgt1516B.1.617.20.000056
S838G838SGGtTCt116B.1.617.20.000004
S838G838GggTggC1113B.1.1.70.00001
S838G838GggTggG113B.1.1.70.000001
S838G838GggTggA113B.1.1.70.000001
S838G838SGgtAgt1313B.1.1770.000171
S838G838SGgtAgt1212AY.1030.000075
S838G838DgGtgAt1212B.10.00011
S838G838GggTggC1212B.1.10.000218
S838G838GggTggC1212B.1.1990.049587
S838G838DgGtgAt1212B.1.5260.000282
S838G838DgGtgAt1111AY.1190.000388
S838G838DgGtgAt1111B.1.1.70.00001
S838G838GggTggC1111B.1.2340.001451
S838G838delGGT---1010B.1.1.70.000009
S838G838GggTggC1010B.1.2580.000665
S838G838RGgtCgt99AY.1030.000056
S838G838GggTggC99B.1.1770.000119
S838G838VgGtgTt88AY.40.000012
S838G838SGgtAgt77AY.1190.000247
S838G838DgGtgAt66A.10.001691
S838G838CGgtTgt56B.10.000046
S838G838CGgTTgC16B.10.000009
S838G838SGgtAgt66B.1.1.70.000005
S838G838DgGtgAt66B.1.1770.000079
S838G838VgGtgTt66P.1.40.005859
S838G838GggTggC45AY.250.000024
S838G838GggTggA15AY.250.000006
S838G838SGgtAgt55AY.40.000008
S838G838GggTggC45AY.430.000018
S838G838GggTggG15AY.430.000004
S838G838SGgtAgt55AY.440.00003
S838G838VgGtgTt55B.10.000046
S838G838SGgtAgt55B.1.1.3910.042735
S838G838VgGtgTt55B.1.438.10.000536
S838G838GggTggC45B.1.617.20.000015
S838G838GggTggG15B.1.617.20.000004
S838G838CGgtTgt44AY.40.000006
S838G838GggTggC34AY.40.000005
S838G838GggTggG14AY.40.000002
S838G838CGgtTgt44AY.430.000018
S838G838delGGT---44AY.430.000018
S838G838GggTggC44AY.50.000083
S838G838VgGtgTt33AY.1190.000106
S838G838SGgtAgt33AY.200.000117
S838G838SGgtAgt33AY.50.000062
S838G838RGgTCgG33B.10.000027
S838G838SGgtAgt33B.10.000027
S838G838CGgtTgt33B.1.1.70.000003
S838G838GggTggC33B.1.3960.002117
S838G838DgGtgAt33B.1.617.20.000011
S838G838GggTggC33B.1.6210.000266
S838G838VgGtgTt33D.20.000225
S838G838GggTggC33P.10.000047
S838G838SGgtAgt33P.10.000047
S838G838delGGT---33P.1.150.000697
S838G838GggTggC22A.2.40.006734
S838G838del1GgT-gC12All0
S838G838del1Ggt-gt12All0
S838G838SGgtAgt22AY.1000.000092
S838G838GggTggC22AY.1030.000012
S838G838GggTggC22AY.260.000057
S838G838DgGtgAt22AY.30.00002
S838G838SGgtAgt22AY.390.000049
S838G838delGGT---22AY.40.000003
S838G838VgGtgTt22AY.4.20.000043
S838G838delGGT---22AY.4.50.000215
S838G838VgGtgTt22AY.430.000009
S838G838VgGtgTt22AY.540.000191
S838G838SGgtAgt22AY.99.20.000184
S838G838SGgtAgt22B0.000256
S838G838delGGT---22B.10.000018
S838G838delGGT---22B.1.10.000036
S838G838VgGtgTt22B.1.10.000036
S838G838delGGT---22B.1.1.2360.013793
S838G838GggTggC22B.1.1.3350.025974
S838G838GggTggC22B.1.1.4860.003155
S838G838GggTggC22B.1.1600.000062
S838G838delGGT---22B.1.177.630.005405
S838G838GggTggC22B.1.3110.000549
S838G838DgGtgAt22B.1.4700.002809
S838G838SGgtAgt22B.1.5260.000047
S838G838DgGtgAt22B.1.5510.002581
S838G838GggTggC22B.1.5770.001375
S838G838delGGT---22B.1.617.20.000008
S838G838SGgtAgt110.055556
S838G838DgGtgAt110.055556
S838G838GggTggA110.055556
S838G838NGGtAAt110.055556
S838G838EgGTgAA110.055556
S838G838RGgTAgA110.055556
S838G838KGGTAAA110.055556
S838G838delGGT---11A0.000387
S838G838DgGtgAt11AL.10.012987
S838G838EgGTgAA11All0
S838G838KGGTAAA11All0
S838G838AgGtgCt11All0
S838G838NGGtAAt11All0
S838G838SGgtAgt11AY.1020.000027
S838G838DgGtgAt11AY.1020.000027
S838G838DgGtgAt11AY.1030.000006
S838G838VgGtgTt11AY.1030.000006
S838G838CGgtTgt11AY.1030.000006
S838G838GggTggC11AY.1130.000142
S838G838delGGT---11AY.1190.000035
S838G838VgGtgTt11AY.120.000316
S838G838delGGT---11AY.1200.000037
S838G838VgGtgTt11AY.1200.000037
S838G838GggTggC11AY.1200.000037
S838G838DgGtgAt11AY.1200.000037
S838G838GggTggC11AY.230.00007
S838G838GggTggG11AY.240.000431
S838G838DgGtgAt11AY.250.000006
S838G838delGGT---11AY.250.000006
S838G838GggTggC11AY.290.000016
S838G838SGgtAgt11AY.30.00001
S838G838GggTggC11AY.390.000025
S838G838CGgtTgt11AY.39.10.00004
S838G838RGgtCgt11AY.40.000002
S838G838CGgtTgt11AY.420.00004
S838G838SGgtAgt11AY.430.000004
S838G838RGgtCgt11AY.430.000004
S838G838GggTggC11AY.440.000006
S838G838CGgtTgt11AY.450.000122
S838G838SGgtAgt11AY.46.10.001027
S838G838delGGT---11AY.46.20.000635
S838G838GggTggC11AY.46.20.000635
S838G838DgGtgAt11AY.46.40.000165
S838G838VgGtgTt11AY.530.000288
S838G838GggTggG11AY.650.000533
S838G838DgGtgAt11AY.650.000533
S838G838DgGtgAt11AY.680.000274
S838G838CGgtTgt11AY.7.10.000113
S838G838CGgtTgt11AY.750.000056
S838G838delGGT---11AY.750.000056
S838G838GggTggC11AY.880.000884
S838G838delGGT---11AY.9.20.000037
S838G838SGgtAgt11AY.900.000684
S838G838VgGtgTt11AY.920.000287
S838G838delGGT---11AY.98.10.000048
S838G838DgGtgAt11B0.000128
S838G838del1Ggt-gt11B.10.000009
S838G838GggTggC11B.1.1.1480.008772
S838G838VgGtgTt11B.1.1.1480.008772
S838G838GggTggC11B.1.1.1610.003534
S838G838GggTggC11B.1.1.2100.005714
S838G838GggTggC11B.1.1.2140.000055
S838G838SGgtAgt11B.1.1.2220.000204
S838G838RGgTCgG11B.1.1.2650.003155
S838G838delGGT---11B.1.1.4090.002833
S838G838SGgtAgt11B.1.1.4820.023256
S838G838SGgtAgt11B.1.1.5190.00004
S838G838GggTggC11B.1.1.5190.00004
S838G838VgGtgTt11B.1.1.5190.00004
S838G838GggTggC11B.1.1.5260.003546
S838G838AgGtgCt11B.1.1.70.000001
S838G838SGgtAgt11B.1.1.700.000341
S838G838GggTggA11B.1.1.720.030303
S838G838GggTggC11B.1.1110.001175
S838G838SGgtAgt11B.1.1460.004237
S838G838SGgtAgt11B.1.1600.000031
S838G838delGGT---11B.1.1770.000013
S838G838VgGtgTt11B.1.1770.000013
S838G838delGGT---11B.1.177.170.000821
S838G838GggTggC11B.1.177.70.000165
S838G838SGgtAgt11B.1.177.770.000726
S838G838CGgtTgt11B.1.20.000009
S838G838delGGT---11B.1.20.000009
S838G838DgGtgAt11B.1.20.000009
S838G838VgGtgTt11B.1.2060.000816
S838G838VgGtgTt11B.1.214.20.0006
S838G838DgGTgAC11B.1.2430.00007
S838G838del1GgT-gC11B.1.2430.00007
S838G838GggTggC11B.1.2470.014925
S838G838SGgtAgt11B.1.2580.000067
S838G838delGGT---11B.1.2580.000067
S838G838DgGtgAt11B.1.258.170.000104
S838G838GggTggC11B.1.2840.013158
S838G838GggTggC11B.1.3360.002439
S838G838CGgtTgt11B.1.3510.00003
S838G838DgGtgAt11B.1.3620.001541
S838G838GggTggG11B.1.3670.000792
S838G838delGGT---11B.1.3690.000285
S838G838VgGtgTt11B.1.3750.00082
S838G838SGgtAgt11B.1.415.10.007576
S838G838CGgtTgt11B.1.4270.00005
S838G838GggTggC11B.1.4270.00005
S838G838RGgtCgt11B.1.4270.00005
S838G838CGgtTgt11B.1.4560.003268
S838G838SGgtAgt11B.1.5170.000427
S838G838GggTggC11B.1.5260.000024
S838G838VgGtgTt11B.1.5260.000024
S838G838GggTggC11B.1.5650.00081
S838G838GggTggC11B.1.5670.003333
S838G838RGgtCgt11B.1.5760.000907
S838G838GggTggC11B.1.5800.004065
S838G838GggTggC11B.1.5810.009434
S838G838SGgtAgt11B.1.5820.000491
S838G838GggTggC11B.1.5950.000261
S838G838CGgtTgt11B.1.5960.000087
S838G838RGgtCgt11B.1.6150.04
S838G838VgGtgTt11B.1.617.20.000004
S838G838GggTggC11B.1.6190.000871
S838G838delGGT---11B.1.6210.000089
S838G838VgGtgTt11B.1.6300.005236
S838G838delGGT---11B.1.6380.052632
S838G838delGGT---11C.370.000116
S838G838SGgtAgt11C.370.000116
S838G838SGgtAgt11D.20.000075
S838G838CGgtTgt11D.20.000075
S838G838delGGT---11P.10.000016
S838G838DgGtgAt11P.10.000016
S838G838SGgtAgt11P.1.100.000269
S838G838delGGT---11P.1.130.000898
S838G838CGgtTgt11P.1.160.000374
S838G838delGGT---11Q.20.000613
S838G838GggTggC11Q.80.000165
S838G838SGgtAgt11Q.80.000165
S838G838GggTggC11R.10.00009
S838G838VgGtgTt11R.10.00009
S838G838GggTggC11W.30.005263