CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 838

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S838G838GsynggTggC15139150360.99319624074-24076
S838G838GsynggTggA15139960.0063412424074-24076
S838G838GsynggTggG1513970.00046238224074-24076
S838G838SnonsynGgtAgt6226210.99839224074-24076
S838G838SnonsynGGtTCt62210.0016077224074-24076
S838G838DnonsyngGtgAt1181170.99152524074-24076
S838G838DnonsyngGTgAC11810.0084745824074-24076
S838G838VnonsyngGtgTt5353124074-24076
S838G838deldelGGT---5151124074-24076
S838G838CnonsynGgtTgt30290.96666724074-24076
S838G838CnonsynGgTTgC3010.033333324074-24076
S838G838RnonsynGgtCgt19140.73684224074-24076
S838G838RnonsynGgTCgG1940.21052624074-24076
S838G838RnonsynGgTAgA1910.052631624074-24076
S838G838del1delGgt-gt210.524074-24076
S838G838del1delGgT-gC210.524074-24076
S838G838KnonsynGGTAAA11124074-24076
S838G838AnonsyngGtgCt11124074-24076
S838G838NnonsynGGtAAt11124074-24076
S838G838EnonsyngGTgAA11124074-24076

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S838G838GggTggC1503615139All0.002876
S838G838GggTggA9615139All0.000018
S838G838GggTggG715139All0.000001
S838G838GggTggC1410214102B.1.2430.981282
S838G838SGgtAgt621622All0.000119
S838G838SGGtTCt1622All0
S838G838SGgtAgt510510AY.250.003068
S838G838GggTggC328331B.10.003004
S838G838GggTggA3331B.10.000027
S838G838GggTggC149149B.1.6020.973856
S838G838DgGtgAt117118All0.000022
S838G838DgGTgAC1118All0
S838G838GggTggA8989B.1.1.2751
S838G838GggTggC6969B.1.243.21
S838G838GggTggC6868AY.330.004541
S838G838GggTggC5454AY.1210.007307
S838G838VgGtgTt5353All0.00001
S838G838delGGT---5151All0.00001
S838G838GggTggC4545B.1.243.11
S838G838GggTggC3939B.1.20.000343
S838G838CGgtTgt2930All0.000006
S838G838CGgTTgC130All0
S838G838GggTggC2424B.1.1690.358209
S838G838DgGtgAt2020AY.730.013307
S838G838RGgtCgt1419All0.000003
S838G838RGgTCgG419All0.000001
S838G838RGgTAgA119All0
S838G838GggTggC1919B.1.5960.001656
S838G838DgGtgAt1616AY.40.000025
S838G838SGgtAgt1516B.1.617.20.000056
S838G838SGGtTCt116B.1.617.20.000004
S838G838GggTggC1113B.1.1.70.00001
S838G838GggTggG113B.1.1.70.000001
S838G838GggTggA113B.1.1.70.000001
S838G838SGgtAgt1313B.1.1770.000171
S838G838SGgtAgt1212AY.1030.000075
S838G838DgGtgAt1212B.10.00011
S838G838GggTggC1212B.1.10.000218
S838G838GggTggC1212B.1.1990.049587
S838G838DgGtgAt1212B.1.5260.000282
S838G838DgGtgAt1111AY.1190.000388
S838G838DgGtgAt1111B.1.1.70.00001
S838G838GggTggC1111B.1.2340.001451
S838G838delGGT---1010B.1.1.70.000009
S838G838GggTggC1010B.1.2580.000665
S838G838RGgtCgt99AY.1030.000056
S838G838GggTggC99B.1.1770.000119
S838G838VgGtgTt88AY.40.000012
S838G838SGgtAgt77AY.1190.000247
S838G838DgGtgAt66A.10.001691
S838G838CGgtTgt56B.10.000046
S838G838CGgTTgC16B.10.000009
S838G838SGgtAgt66B.1.1.70.000005
S838G838DgGtgAt66B.1.1770.000079
S838G838VgGtgTt66P.1.40.005859
S838G838GggTggC45AY.250.000024
S838G838GggTggA15AY.250.000006
S838G838SGgtAgt55AY.40.000008
S838G838GggTggC45AY.430.000018
S838G838GggTggG15AY.430.000004
S838G838SGgtAgt55AY.440.00003
S838G838VgGtgTt55B.10.000046
S838G838SGgtAgt55B.1.1.3910.042735
S838G838VgGtgTt55B.1.438.10.000536
S838G838GggTggC45B.1.617.20.000015
S838G838GggTggG15B.1.617.20.000004
S838G838CGgtTgt44AY.40.000006
S838G838GggTggC34AY.40.000005
S838G838GggTggG14AY.40.000002
S838G838CGgtTgt44AY.430.000018
S838G838delGGT---44AY.430.000018
S838G838GggTggC44AY.50.000083
S838G838VgGtgTt33AY.1190.000106
S838G838SGgtAgt33AY.200.000117
S838G838SGgtAgt33AY.50.000062
S838G838RGgTCgG33B.10.000027
S838G838SGgtAgt33B.10.000027
S838G838CGgtTgt33B.1.1.70.000003
S838G838GggTggC33B.1.3960.002117
S838G838DgGtgAt33B.1.617.20.000011
S838G838GggTggC33B.1.6210.000266
S838G838VgGtgTt33D.20.000225
S838G838GggTggC33P.10.000047
S838G838SGgtAgt33P.10.000047
S838G838delGGT---33P.1.150.000697
S838G838GggTggC22A.2.40.006734
S838G838del1GgT-gC12All0
S838G838del1Ggt-gt12All0
S838G838SGgtAgt22AY.1000.000092
S838G838GggTggC22AY.1030.000012
S838G838GggTggC22AY.260.000057
S838G838DgGtgAt22AY.30.00002
S838G838SGgtAgt22AY.390.000049
S838G838delGGT---22AY.40.000003
S838G838VgGtgTt22AY.4.20.000043
S838G838delGGT---22AY.4.50.000215
S838G838VgGtgTt22AY.430.000009
S838G838VgGtgTt22AY.540.000191
S838G838SGgtAgt22AY.99.20.000184
S838G838SGgtAgt22B0.000256
S838G838delGGT---22B.10.000018
S838G838delGGT---22B.1.10.000036
S838G838VgGtgTt22B.1.10.000036
S838G838delGGT---22B.1.1.2360.013793
S838G838GggTggC22B.1.1.3350.025974
S838G838GggTggC22B.1.1.4860.003155
S838G838GggTggC22B.1.1600.000062
S838G838delGGT---22B.1.177.630.005405
S838G838GggTggC22B.1.3110.000549
S838G838DgGtgAt22B.1.4700.002809
S838G838SGgtAgt22B.1.5260.000047
S838G838DgGtgAt22B.1.5510.002581
S838G838GggTggC22B.1.5770.001375
S838G838delGGT---22B.1.617.20.000008
S838G838SGgtAgt110.055556
S838G838DgGtgAt110.055556
S838G838GggTggA110.055556
S838G838NGGtAAt110.055556
S838G838EgGTgAA110.055556
S838G838RGgTAgA110.055556
S838G838KGGTAAA110.055556
S838G838delGGT---11A0.000387
S838G838DgGtgAt11AL.10.012987
S838G838EgGTgAA11All0
S838G838KGGTAAA11All0
S838G838AgGtgCt11All0
S838G838NGGtAAt11All0
S838G838SGgtAgt11AY.1020.000027
S838G838DgGtgAt11AY.1020.000027
S838G838DgGtgAt11AY.1030.000006
S838G838VgGtgTt11AY.1030.000006
S838G838CGgtTgt11AY.1030.000006
S838G838GggTggC11AY.1130.000142
S838G838delGGT---11AY.1190.000035
S838G838VgGtgTt11AY.120.000316
S838G838delGGT---11AY.1200.000037
S838G838VgGtgTt11AY.1200.000037
S838G838GggTggC11AY.1200.000037
S838G838DgGtgAt11AY.1200.000037
S838G838GggTggC11AY.230.00007
S838G838GggTggG11AY.240.000431
S838G838DgGtgAt11AY.250.000006
S838G838delGGT---11AY.250.000006
S838G838GggTggC11AY.290.000016
S838G838SGgtAgt11AY.30.00001
S838G838GggTggC11AY.390.000025
S838G838CGgtTgt11AY.39.10.00004
S838G838RGgtCgt11AY.40.000002
S838G838CGgtTgt11AY.420.00004
S838G838SGgtAgt11AY.430.000004
S838G838RGgtCgt11AY.430.000004
S838G838GggTggC11AY.440.000006
S838G838CGgtTgt11AY.450.000122
S838G838SGgtAgt11AY.46.10.001027
S838G838delGGT---11AY.46.20.000635
S838G838GggTggC11AY.46.20.000635
S838G838DgGtgAt11AY.46.40.000165
S838G838VgGtgTt11AY.530.000288
S838G838GggTggG11AY.650.000533
S838G838DgGtgAt11AY.650.000533
S838G838DgGtgAt11AY.680.000274
S838G838CGgtTgt11AY.7.10.000113
S838G838CGgtTgt11AY.750.000056
S838G838delGGT---11AY.750.000056
S838G838GggTggC11AY.880.000884
S838G838delGGT---11AY.9.20.000037
S838G838SGgtAgt11AY.900.000684
S838G838VgGtgTt11AY.920.000287
S838G838delGGT---11AY.98.10.000048
S838G838DgGtgAt11B0.000128
S838G838del1Ggt-gt11B.10.000009
S838G838GggTggC11B.1.1.1480.008772
S838G838VgGtgTt11B.1.1.1480.008772
S838G838GggTggC11B.1.1.1610.003534
S838G838GggTggC11B.1.1.2100.005714
S838G838GggTggC11B.1.1.2140.000055
S838G838SGgtAgt11B.1.1.2220.000204
S838G838RGgTCgG11B.1.1.2650.003155
S838G838delGGT---11B.1.1.4090.002833
S838G838SGgtAgt11B.1.1.4820.023256
S838G838SGgtAgt11B.1.1.5190.00004
S838G838GggTggC11B.1.1.5190.00004
S838G838VgGtgTt11B.1.1.5190.00004
S838G838GggTggC11B.1.1.5260.003546
S838G838AgGtgCt11B.1.1.70.000001
S838G838SGgtAgt11B.1.1.700.000341
S838G838GggTggA11B.1.1.720.030303
S838G838GggTggC11B.1.1110.001175
S838G838SGgtAgt11B.1.1460.004237
S838G838SGgtAgt11B.1.1600.000031
S838G838delGGT---11B.1.1770.000013
S838G838VgGtgTt11B.1.1770.000013
S838G838delGGT---11B.1.177.170.000821
S838G838GggTggC11B.1.177.70.000165
S838G838SGgtAgt11B.1.177.770.000726
S838G838CGgtTgt11B.1.20.000009
S838G838delGGT---11B.1.20.000009
S838G838DgGtgAt11B.1.20.000009
S838G838VgGtgTt11B.1.2060.000816
S838G838VgGtgTt11B.1.214.20.0006
S838G838DgGTgAC11B.1.2430.00007
S838G838del1GgT-gC11B.1.2430.00007
S838G838GggTggC11B.1.2470.014925
S838G838SGgtAgt11B.1.2580.000067
S838G838delGGT---11B.1.2580.000067
S838G838DgGtgAt11B.1.258.170.000104
S838G838GggTggC11B.1.2840.013158
S838G838GggTggC11B.1.3360.002439
S838G838CGgtTgt11B.1.3510.00003
S838G838DgGtgAt11B.1.3620.001541
S838G838GggTggG11B.1.3670.000792
S838G838delGGT---11B.1.3690.000285
S838G838VgGtgTt11B.1.3750.00082
S838G838SGgtAgt11B.1.415.10.007576
S838G838CGgtTgt11B.1.4270.00005
S838G838GggTggC11B.1.4270.00005
S838G838RGgtCgt11B.1.4270.00005
S838G838CGgtTgt11B.1.4560.003268
S838G838SGgtAgt11B.1.5170.000427
S838G838GggTggC11B.1.5260.000024
S838G838VgGtgTt11B.1.5260.000024
S838G838GggTggC11B.1.5650.00081
S838G838GggTggC11B.1.5670.003333
S838G838RGgtCgt11B.1.5760.000907
S838G838GggTggC11B.1.5800.004065
S838G838GggTggC11B.1.5810.009434
S838G838SGgtAgt11B.1.5820.000491
S838G838GggTggC11B.1.5950.000261
S838G838CGgtTgt11B.1.5960.000087
S838G838RGgtCgt11B.1.6150.04
S838G838VgGtgTt11B.1.617.20.000004
S838G838GggTggC11B.1.6190.000871
S838G838delGGT---11B.1.6210.000089
S838G838VgGtgTt11B.1.6300.005236
S838G838delGGT---11B.1.6380.052632
S838G838delGGT---11C.370.000116
S838G838SGgtAgt11C.370.000116
S838G838SGgtAgt11D.20.000075
S838G838CGgtTgt11D.20.000075
S838G838delGGT---11P.10.000016
S838G838DgGtgAt11P.10.000016
S838G838SGgtAgt11P.1.100.000269
S838G838delGGT---11P.1.130.000898
S838G838CGgtTgt11P.1.160.000374
S838G838delGGT---11Q.20.000613
S838G838GggTggC11Q.80.000165
S838G838SGgtAgt11Q.80.000165
S838G838GggTggC11R.10.00009
S838G838VgGtgTt11R.10.00009
S838G838GggTggC11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.