CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 834

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	834	I834V		nonsyn	Atc	Gtc	1651	1650	0.999394	24062-24064
S	834	I834V		nonsyn	AtC	GtT	1651	1	0.000605693	24062-24064
S	834	I834T		nonsyn	aTc	aCc	1104	1104	1	24062-24064
S	834	I834I		syn	atC	atT	731	695	0.950752	24062-24064
S	834	I834I		syn	atC	atA	731	36	0.0492476	24062-24064
S	834	I834F		nonsyn	Atc	Ttc	116	114	0.982759	24062-24064
S	834	I834F		nonsyn	AtC	TtT	116	2	0.0172414	24062-24064
S	834	I834S		nonsyn	aTc	aGc	69	69	1	24062-24064
S	834	I834del		del	ATC	---	56	56	1	24062-24064
S	834	I834N		nonsyn	aTc	aAc	43	43	1	24062-24064
S	834	I834M		nonsyn	atC	atG	13	13	1	24062-24064
S	834	I834L		nonsyn	Atc	Ctc	8	8	1	24062-24064
S	834	I834del1		del	atC	at-	3	3	1	24062-24064
S	834	I834H		nonsyn	ATc	CAc	2	1	0.5	24062-24064
S	834	I834H		nonsyn	ATC	CAT	2	1	0.5	24062-24064
S	834	I834R		nonsyn	aTC	aGG	1	1	1	24062-24064
S	834	I834G		nonsyn	ATc	GGc	1	1	1	24062-24064

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	834	I834V	Atc	Gtc	1650	1651	All	0.000316
S	834	I834V	AtC	GtT	1	1651	All	0
S	834	I834T	aTc	aCc	1104	1104	All	0.000211
S	834	I834I	atC	atT	695	731	All	0.000133
S	834	I834I	atC	atA	36	731	All	0.000007
S	834	I834V	Atc	Gtc	562	562	AY.3	0.00559
S	834	I834V	Atc	Gtc	518	518	AY.103	0.003216
S	834	I834T	aTc	aCc	192	192	AY.44	0.001169
S	834	I834I	atC	atT	137	141	B.1.617.2	0.000516
S	834	I834I	atC	atA	4	141	B.1.617.2	0.000015
S	834	I834T	aTc	aCc	124	124	B.1.577	0.085223
S	834	I834V	Atc	Gtc	117	117	AY.4	0.000182
S	834	I834F	Atc	Ttc	114	116	All	0.000022
S	834	I834F	AtC	TtT	2	116	All	0
S	834	I834T	aTc	aCc	102	102	AY.4	0.000159
S	834	I834I	atC	atT	96	96	AY.4	0.000149
S	834	I834T	aTc	aCc	95	95	B.1.617.2	0.000358
S	834	I834T	aTc	aCc	84	84	B.1.1.7	0.000075
S	834	I834V	Atc	Gtc	82	82	B.1.1.7	0.000073
S	834	I834I	atC	atT	68	78	B.1.1.7	0.000061
S	834	I834I	atC	atA	10	78	B.1.1.7	0.000009
S	834	I834V	Atc	Gtc	74	74	AY.46.6	0.005343
S	834	I834T	aTc	aCc	71	71	AY.119	0.002507
S	834	I834S	aTc	aGc	69	69	All	0.000013
S	834	I834I	atC	atT	69	69	B.1.243.2	1
S	834	I834T	aTc	aCc	61	61	AY.43	0.00027
S	834	I834del	ATC	---	56	56	All	0.000011
S	834	I834I	atC	atT	48	48	AY.44	0.000292
S	834	I834N	aTc	aAc	43	43	All	0.000008
S	834	I834T	aTc	aCc	43	43	B.1.2	0.000379
S	834	I834V	Atc	Gtc	39	39	B.1.617.2	0.000147
S	834	I834I	atC	atT	37	37	B.1.177.54	0.022438
S	834	I834T	aTc	aCc	30	30	AY.3	0.000298
S	834	I834T	aTc	aCc	29	29	AY.78	0.044684
S	834	I834F	Atc	Ttc	29	29	B.1.1.519	0.001152
S	834	I834F	Atc	Ttc	29	29	B.1.1.7	0.000026
S	834	I834V	Atc	Gtc	28	28	AY.25	0.000168
S	834	I834I	atC	atT	27	27	R.1	0.00243
S	834	I834T	aTc	aCc	25	25	C.27	0.462963
S	834	I834I	atC	atT	24	24	AY.4.2	0.000521
S	834	I834N	aTc	aAc	23	23	B.1.1.306	0.010083
S	834	I834T	aTc	aCc	22	22	AK.2	1
S	834	I834S	aTc	aGc	19	19	B.1.1.7	0.000017
S	834	I834V	Atc	Gtc	19	19	B.1.2	0.000167
S	834	I834F	Atc	Ttc	19	19	B.1.2	0.000167
S	834	I834I	atC	atT	12	18	B.1	0.00011
S	834	I834I	atC	atA	6	18	B.1	0.000055
S	834	I834T	aTc	aCc	17	17	AY.100	0.000782
S	834	I834I	atC	atT	16	16	AY.39	0.000395
S	834	I834V	Atc	Gtc	16	16	AY.44	0.000097
S	834	I834T	aTc	aCc	16	16	B.1.177	0.000211
S	834	I834V	Atc	Gtc	16	16	B.1.628	0.005638
S	834	I834V	Atc	Gtc	14	14	AY.5	0.000289
S	834	I834V	Atc	Gtc	14	14	B.1.1.456	0.777778
S	834	I834T	aTc	aCc	14	14	P.1	0.000221
S	834	I834M	atC	atG	13	13	All	0.000002
S	834	I834T	aTc	aCc	13	13	AY.103	0.000081
S	834	I834S	aTc	aGc	13	13	B.1.1	0.000236
S	834	I834I	atC	atT	10	11	AY.3	0.000099
S	834	I834I	atC	atA	1	11	AY.3	0.00001
S	834	I834T	aTc	aCc	11	11	B.1	0.000101
S	834	I834del	ATC	---	11	11	B.1.1.7	0.00001
S	834	I834I	atC	atT	11	11	B.1.438.1	0.00118
S	834	I834T	aTc	aCc	11	11	B.1.438.1	0.00118
S	834	I834T	aTc	aCc	9	9	AY.25	0.000054
S	834	I834T	aTc	aCc	9	9	AY.39	0.000222
S	834	I834I	atC	atT	8	9	AY.43	0.000035
S	834	I834I	atC	atA	1	9	AY.43	0.000004
S	834	I834I	atC	atT	9	9	AY.92	0.002585
S	834	I834V	Atc	Gtc	9	9	B.1.1.433	0.012821
S	834	I834L	Atc	Ctc	8	8	All	0.000002
S	834	I834F	Atc	Ttc	8	8	B.1.1.284	0.000859
S	834	I834I	atC	atT	7	7	AY.23	0.000488
S	834	I834V	Atc	Gtc	7	7	AY.47	0.000218
S	834	I834I	atC	atT	7	7	AY.5	0.000145
S	834	I834I	atC	atT	7	7	B.1.1	0.000127
S	834	I834I	atC	atT	7	7	B.1.243	0.000487
S	834	I834V	Atc	Gtc	6	6	AY.119	0.000212
S	834	I834T	aTc	aCc	6	6	AY.29.1	0.001323
S	834	I834V	Atc	Gtc	6	6	AY.39	0.000148
S	834	I834I	atC	atT	6	6	AY.45	0.00073
S	834	I834T	aTc	aCc	6	6	AY.61	0.000629
S	834	I834V	Atc	Gtc	6	6	AY.7	0.001176
S	834	I834V	Atc	Gtc	6	6	B.1	0.000055
S	834	I834V	Atc	Gtc	6	6	B.1.177	0.000079
S	834	I834M	atC	atG	6	6	B.1.429	0.000141
S	834	I834T	aTc	aCc	6	6	B.1.595	0.001566
S	834	I834I	atC	atT	6	6	B.1.609	0.002876
S	834	I834I	atC	atT	5	5	AY.100	0.00023
S	834	I834V	Atc	Gtc	5	5	AY.102	0.000133
S	834	I834I	atC	atT	5	5	AY.102	0.000133
S	834	I834I	atC	atT	4	5	AY.103	0.000025
S	834	I834I	atC	atA	1	5	AY.103	0.000006
S	834	I834I	atC	atT	5	5	AY.26	0.000142
S	834	I834T	aTc	aCc	5	5	AY.29	0.000079
S	834	I834S	aTc	aGc	5	5	AY.4	0.000008
S	834	I834T	aTc	aCc	5	5	AY.4.2	0.000108
S	834	I834del	ATC	---	5	5	AY.43	0.000022
S	834	I834V	Atc	Gtc	5	5	AY.43	0.000022
S	834	I834M	atC	atG	5	5	B.1.1.7	0.000004
S	834	I834I	atC	atT	5	5	B.1.389	0.00501
S	834	I834S	aTc	aGc	5	5	B.1.526	0.000118
S	834	I834T	aTc	aCc	5	5	B.1.526	0.000118
S	834	I834T	aTc	aCc	4	4	AY.117	0.000338
S	834	I834V	Atc	Gtc	4	4	AY.118	0.000251
S	834	I834V	Atc	Gtc	4	4	AY.33	0.000267
S	834	I834I	atC	atT	4	4	AY.46	0.000416
S	834	I834I	atC	atT	4	4	AY.64	0.002381
S	834	I834N	aTc	aAc	4	4	B.1.1.277	0.003035
S	834	I834T	aTc	aCc	4	4	B.1.1.289	0.008333
S	834	I834T	aTc	aCc	4	4	B.1.427	0.000202
S	834	I834N	aTc	aAc	4	4	B.1.538	0.032258
S	834	I834S	aTc	aGc	4	4	B.1.617.2	0.000015
S	834	I834del1	atC	at-	3	3	All	0.000001
S	834	I834S	aTc	aGc	3	3	AY.119	0.000106
S	834	I834T	aTc	aCc	3	3	AY.12	0.000948
S	834	I834V	Atc	Gtc	3	3	AY.120	0.000112
S	834	I834I	atC	atT	3	3	AY.120	0.000112
S	834	I834V	Atc	Gtc	3	3	AY.20	0.000117
S	834	I834V	Atc	Gtc	3	3	AY.23	0.000209
S	834	I834V	Atc	Gtc	3	3	AY.29	0.000047
S	834	I834F	Atc	Ttc	3	3	AY.4	0.000005
S	834	I834I	atC	atT	3	3	AY.40	0.002893
S	834	I834T	aTc	aCc	3	3	AY.42	0.000121
S	834	I834V	Atc	Gtc	3	3	AY.42	0.000121
S	834	I834T	aTc	aCc	3	3	AY.46.6	0.000217
S	834	I834T	aTc	aCc	3	3	AY.5	0.000062
S	834	I834T	aTc	aCc	3	3	AY.51	0.002727
S	834	I834T	aTc	aCc	3	3	AY.9	0.000203
S	834	I834V	Atc	Gtc	3	3	B.1.1.311	0.001074
S	834	I834I	atC	atT	2	3	B.1.177	0.000026
S	834	I834I	atC	atA	1	3	B.1.177	0.000013
S	834	I834V	Atc	Gtc	3	3	B.1.36.29	0.001552
S	834	I834T	aTc	aCc	3	3	B.1.555	0.066667
S	834	I834F	Atc	Ttc	2	3	B.1.617.2	0.000008
S	834	I834F	AtC	TtT	1	3	B.1.617.2	0.000004
S	834	I834del	ATC	---	3	3	B.1.621	0.000266
S	834	I834V	Atc	Gtc	3	3	P.1	0.000047
S	834	I834F	Atc	Ttc	3	3	P.1	0.000047
S	834	I834del	ATC	---	3	3	P.1.15	0.000697
S	834	I834V	Atc	Gtc	3	3	P.1.17	0.000485
S	834	I834del	ATC	---	2	2		0.111111
S	834	I834F	Atc	Ttc	1	2		0.055556
S	834	I834F	AtC	TtT	1	2		0.055556
S	834	I834H	ATc	CAc	1	2	All	0
S	834	I834H	ATC	CAT	1	2	All	0
S	834	I834T	aTc	aCc	2	2	AY.105	0.001286
S	834	I834V	Atc	Gtc	2	2	AY.113	0.000285
S	834	I834I	atC	atT	2	2	AY.117	0.000169
S	834	I834N	aTc	aAc	2	2	AY.20	0.000078
S	834	I834T	aTc	aCc	2	2	AY.20	0.000078
S	834	I834T	aTc	aCc	2	2	AY.23.1	0.000835
S	834	I834V	Atc	Gtc	2	2	AY.27	0.000129
S	834	I834T	aTc	aCc	2	2	AY.3.1	0.000171
S	834	I834I	atC	atT	2	2	AY.33	0.000134
S	834	I834N	aTc	aAc	2	2	AY.4	0.000003
S	834	I834del	ATC	---	2	2	AY.4	0.000003
S	834	I834del	ATC	---	2	2	AY.4.5	0.000215
S	834	I834F	Atc	Ttc	2	2	AY.43	0.000009
S	834	I834V	Atc	Gtc	2	2	AY.45	0.000243
S	834	I834T	aTc	aCc	2	2	AY.46.5	0.000397
S	834	I834I	atC	atT	2	2	AY.47	0.000062
S	834	I834T	aTc	aCc	2	2	AY.47	0.000062
S	834	I834S	aTc	aGc	2	2	AY.5	0.000041
S	834	I834V	Atc	Gtc	2	2	AY.59	0.001059
S	834	I834I	atC	atT	2	2	AY.67	0.000929
S	834	I834V	Atc	Gtc	2	2	AY.69	0.000373
S	834	I834F	Atc	Ttc	2	2	AY.75.1	0.000361
S	834	I834I	atC	atT	2	2	AY.75.1	0.000361
S	834	I834T	aTc	aCc	2	2	AY.75.1	0.000361
S	834	I834I	atC	atA	2	2	AY.9.2	0.000073
S	834	I834V	Atc	Gtc	2	2	AY.9.2	0.000073
S	834	I834T	aTc	aCc	2	2	AY.91	0.001461
S	834	I834V	Atc	Gtc	2	2	AY.98.1	0.000097
S	834	I834T	aTc	aCc	2	2	AY.98.1	0.000097
S	834	I834T	aTc	aCc	2	2	AY.99.2	0.000184
S	834	I834del	ATC	---	2	2	B.1	0.000018
S	834	I834N	aTc	aAc	2	2	B.1	0.000018
S	834	I834del	ATC	---	2	2	B.1.1	0.000036
S	834	I834V	Atc	Gtc	2	2	B.1.1.216	0.001781
S	834	I834del	ATC	---	2	2	B.1.1.236	0.013793
S	834	I834V	Atc	Gtc	2	2	B.1.1.28	0.000622
S	834	I834I	atC	atT	2	2	B.1.1.325	0.051282
S	834	I834T	aTc	aCc	2	2	B.1.1.434	0.000697
S	834	I834F	Atc	Ttc	2	2	B.1.177	0.000026
S	834	I834del	ATC	---	2	2	B.1.177.63	0.005405
S	834	I834I	atC	atA	2	2	B.1.2	0.000018
S	834	I834del	ATC	---	2	2	B.1.2	0.000018
S	834	I834S	aTc	aGc	2	2	B.1.2	0.000018
S	834	I834S	aTc	aGc	2	2	B.1.243	0.000139
S	834	I834V	Atc	Gtc	2	2	B.1.351	0.000059
S	834	I834I	atC	atT	2	2	B.1.36	0.000292
S	834	I834F	Atc	Ttc	2	2	B.1.429	0.000047
S	834	I834del	ATC	---	2	2	B.1.617.2	0.000008
S	834	I834V	Atc	Gtc	2	2	B.1.634	0.006849
S	834	I834F	Atc	Ttc	2	2	B.1.637	0.000146
S	834	I834T	aTc	aCc	2	2	B.6.6	0.001778
S	834	I834I	atC	atA	2	2	B.6.6	0.001778
S	834	I834I	atC	atT	1	2	D.2	0.000075
S	834	I834I	atC	atA	1	2	D.2	0.000075
S	834	I834I	atC	atT	2	2	P.1	0.000032
S	834	I834V	Atc	Gtc	2	2	P.1.16	0.000748
S	834	I834V	Atc	Gtc	2	2	Q.7	0.002222
S	834	I834I	atC	atT	1	1		0.055556
S	834	I834L	Atc	Ctc	1	1		0.055556
S	834	I834del	ATC	---	1	1	A	0.000387
S	834	I834T	aTc	aCc	1	1	A	0.000387
S	834	I834V	Atc	Gtc	1	1	A.2	0.000662
S	834	I834L	Atc	Ctc	1	1	A.23.1	0.000704
S	834	I834I	atC	atT	1	1	A.27	0.001656
S	834	I834R	aTC	aGG	1	1	All	0
S	834	I834G	ATc	GGc	1	1	All	0
S	834	I834T	aTc	aCc	1	1	AY.102	0.000027
S	834	I834S	aTc	aGc	1	1	AY.103	0.000006
S	834	I834F	Atc	Ttc	1	1	AY.103	0.000006
S	834	I834N	aTc	aAc	1	1	AY.103	0.000006
S	834	I834I	atC	atT	1	1	AY.106	0.000335
S	834	I834I	atC	atT	1	1	AY.107	0.000466
S	834	I834V	Atc	Gtc	1	1	AY.111	0.000183
S	834	I834F	Atc	Ttc	1	1	AY.111	0.000183
S	834	I834del1	atC	at-	1	1	AY.117	0.000085
S	834	I834del	ATC	---	1	1	AY.119	0.000035
S	834	I834T	aTc	aCc	1	1	AY.120	0.000037
S	834	I834del	ATC	---	1	1	AY.120	0.000037
S	834	I834V	Atc	Gtc	1	1	AY.120.1	0.000321
S	834	I834I	atC	atA	1	1	AY.16.1	0.00047
S	834	I834S	aTc	aGc	1	1	AY.20	0.000039
S	834	I834I	atC	atA	1	1	AY.20	0.000039
S	834	I834T	aTc	aCc	1	1	AY.23	0.00007
S	834	I834T	aTc	aCc	1	1	AY.24	0.000431
S	834	I834I	atC	atA	1	1	AY.24	0.000431
S	834	I834I	atC	atA	1	1	AY.25	0.000006
S	834	I834S	aTc	aGc	1	1	AY.25	0.000006
S	834	I834del	ATC	---	1	1	AY.25	0.000006
S	834	I834T	aTc	aCc	1	1	AY.26	0.000028
S	834	I834I	atC	atT	1	1	AY.29	0.000016
S	834	I834S	aTc	aGc	1	1	AY.29	0.000016
S	834	I834L	Atc	Ctc	1	1	AY.3	0.00001
S	834	I834S	aTc	aGc	1	1	AY.3	0.00001
S	834	I834T	aTc	aCc	1	1	AY.32	0.000532
S	834	I834I	atC	atT	1	1	AY.34	0.000097
S	834	I834T	aTc	aCc	1	1	AY.34	0.000097
S	834	I834T	aTc	aCc	1	1	AY.34.1	0.00051
S	834	I834T	aTc	aCc	1	1	AY.36	0.000148
S	834	I834T	aTc	aCc	1	1	AY.37	0.000316
S	834	I834S	aTc	aGc	1	1	AY.39	0.000025
S	834	I834T	aTc	aCc	1	1	AY.39.1	0.00004
S	834	I834V	Atc	Gtc	1	1	AY.4.2	0.000022
S	834	I834N	aTc	aAc	1	1	AY.4.2	0.000022
S	834	I834V	Atc	Gtc	1	1	AY.4.3	0.000842
S	834	I834I	atC	atT	1	1	AY.4.5	0.000107
S	834	I834H	ATC	CAT	1	1	AY.43	0.000004
S	834	I834S	aTc	aGc	1	1	AY.43	0.000004
S	834	I834del1	atC	at-	1	1	AY.43	0.000004
S	834	I834T	aTc	aCc	1	1	AY.46	0.000104
S	834	I834del	ATC	---	1	1	AY.46.2	0.000635
S	834	I834L	Atc	Ctc	1	1	AY.46.4	0.000165
S	834	I834I	atC	atT	1	1	AY.46.6	0.000072
S	834	I834F	Atc	Ttc	1	1	AY.5	0.000021
S	834	I834V	Atc	Gtc	1	1	AY.53	0.000288
S	834	I834T	aTc	aCc	1	1	AY.54	0.000095
S	834	I834V	Atc	Gtc	1	1	AY.58	0.000907
S	834	I834V	Atc	Gtc	1	1	AY.6	0.000041
S	834	I834V	Atc	Gtc	1	1	AY.60	0.000938
S	834	I834F	Atc	Ttc	1	1	AY.65	0.000533
S	834	I834T	aTc	aCc	1	1	AY.68	0.000274
S	834	I834I	atC	atT	1	1	AY.7	0.000196
S	834	I834V	Atc	Gtc	1	1	AY.7.1	0.000113
S	834	I834I	atC	atT	1	1	AY.70	0.000209
S	834	I834V	AtC	GtT	1	1	AY.75	0.000056
S	834	I834R	aTC	aGG	1	1	AY.85	0.000427
S	834	I834V	Atc	Gtc	1	1	AY.88	0.000884
S	834	I834F	Atc	Ttc	1	1	AY.9.2	0.000037
S	834	I834del	ATC	---	1	1	AY.9.2	0.000037
S	834	I834V	Atc	Gtc	1	1	AY.92	0.000287
S	834	I834V	Atc	Gtc	1	1	AY.94	0.000443
S	834	I834V	Atc	Gtc	1	1	AY.95	0.000761
S	834	I834I	atC	atT	1	1	AY.96	0.002075
S	834	I834del	ATC	---	1	1	AY.98.1	0.000048
S	834	I834I	atC	atT	1	1	AY.99	0.001049
S	834	I834M	atC	atG	1	1	AY.99.2	0.000092
S	834	I834S	aTc	aGc	1	1	B.1	0.000009
S	834	I834G	ATc	GGc	1	1	B.1	0.000009
S	834	I834F	Atc	Ttc	1	1	B.1	0.000009
S	834	I834V	Atc	Gtc	1	1	B.1.1	0.000018
S	834	I834del1	atC	at-	1	1	B.1.1	0.000018
S	834	I834L	Atc	Ctc	1	1	B.1.1	0.000018
S	834	I834S	aTc	aGc	1	1	B.1.1.161	0.003534
S	834	I834T	aTc	aCc	1	1	B.1.1.164	0.005155
S	834	I834F	Atc	Ttc	1	1	B.1.1.189	0.001513
S	834	I834I	atC	atT	1	1	B.1.1.203	0.016949
S	834	I834S	aTc	aGc	1	1	B.1.1.216	0.00089
S	834	I834V	Atc	Gtc	1	1	B.1.1.25	0.000569
S	834	I834I	atC	atT	1	1	B.1.1.267	0.010101
S	834	I834V	Atc	Gtc	1	1	B.1.1.284	0.000107
S	834	I834T	aTc	aCc	1	1	B.1.1.284	0.000107
S	834	I834V	Atc	Gtc	1	1	B.1.1.301	0.001179
S	834	I834T	aTc	aCc	1	1	B.1.1.317	0.000412
S	834	I834S	aTc	aGc	1	1	B.1.1.318	0.000302
S	834	I834I	atC	atT	1	1	B.1.1.348	0.000796
S	834	I834V	Atc	Gtc	1	1	B.1.1.398	0.003226
S	834	I834del	ATC	---	1	1	B.1.1.409	0.002833
S	834	I834L	Atc	Ctc	1	1	B.1.1.409	0.002833
S	834	I834T	aTc	aCc	1	1	B.1.1.432	0.001266
S	834	I834T	aTc	aCc	1	1	B.1.1.50	0.000679
S	834	I834V	Atc	Gtc	1	1	B.1.1.519	0.00004
S	834	I834L	Atc	Ctc	1	1	B.1.1.7	0.000001
S	834	I834T	aTc	aCc	1	1	B.1.1.70	0.000341
S	834	I834V	Atc	Gtc	1	1	B.1.139	0.000733
S	834	I834V	Atc	Gtc	1	1	B.1.160	0.000031
S	834	I834I	atC	atT	1	1	B.1.160	0.000031
S	834	I834del	ATC	---	1	1	B.1.177	0.000013
S	834	I834del	ATC	---	1	1	B.1.177.17	0.000821
S	834	I834I	atC	atT	1	1	B.1.177.21	0.000076
S	834	I834I	atC	atT	1	1	B.1.177.33	0.001645
S	834	I834T	aTc	aCc	1	1	B.1.177.4	0.000211
S	834	I834S	aTc	aGc	1	1	B.1.177.60	0.000218
S	834	I834V	Atc	Gtc	1	1	B.1.177.65	0.000665
S	834	I834T	aTc	aCc	1	1	B.1.177.81	0.000189
S	834	I834V	Atc	Gtc	1	1	B.1.236	0.002053
S	834	I834T	aTc	aCc	1	1	B.1.236	0.002053
S	834	I834I	atC	atT	1	1	B.1.240	0.000216
S	834	I834I	atC	atT	1	1	B.1.258	0.000067
S	834	I834del	ATC	---	1	1	B.1.258	0.000067
S	834	I834V	Atc	Gtc	1	1	B.1.258	0.000067
S	834	I834I	atC	atA	1	1	B.1.301	0.005917
S	834	I834T	aTc	aCc	1	1	B.1.346	0.001311
S	834	I834I	atC	atT	1	1	B.1.349	0.000715
S	834	I834F	Atc	Ttc	1	1	B.1.351	0.00003
S	834	I834V	Atc	Gtc	1	1	B.1.36.16	0.001425
S	834	I834V	Atc	Gtc	1	1	B.1.36.18	0.00042
S	834	I834T	aTc	aCc	1	1	B.1.369	0.000285
S	834	I834T	aTc	aCc	1	1	B.1.390	0.010638
S	834	I834T	aTc	aCc	1	1	B.1.409	0.000781
S	834	I834H	ATc	CAc	1	1	B.1.427	0.00005
S	834	I834N	aTc	aAc	1	1	B.1.427	0.00005
S	834	I834L	Atc	Ctc	1	1	B.1.427	0.00005
S	834	I834F	Atc	Ttc	1	1	B.1.427	0.00005
S	834	I834I	atC	atT	1	1	B.1.429	0.000024
S	834	I834N	aTc	aAc	1	1	B.1.429	0.000024
S	834	I834S	aTc	aGc	1	1	B.1.429	0.000024
S	834	I834V	Atc	Gtc	1	1	B.1.459	0.004082
S	834	I834S	aTc	aGc	1	1	B.1.497	0.000315
S	834	I834V	Atc	Gtc	1	1	B.1.517	0.000427
S	834	I834T	aTc	aCc	1	1	B.1.524	0.001406
S	834	I834T	aTc	aCc	1	1	B.1.525	0.000113
S	834	I834I	atC	atT	1	1	B.1.526	0.000024
S	834	I834T	aTc	aCc	1	1	B.1.544	0.006024
S	834	I834I	atC	atT	1	1	B.1.561	0.000397
S	834	I834N	aTc	aAc	1	1	B.1.577	0.000687
S	834	I834F	Atc	Ttc	1	1	B.1.582	0.000491
S	834	I834V	Atc	Gtc	1	1	B.1.596	0.000087
S	834	I834N	aTc	aAc	1	1	B.1.617.1	0.000129
S	834	I834M	atC	atG	1	1	B.1.617.2	0.000004
S	834	I834T	aTc	aCc	1	1	B.1.621	0.000089
S	834	I834V	Atc	Gtc	1	1	B.1.637	0.000073
S	834	I834del	ATC	---	1	1	B.1.638	0.052632
S	834	I834I	atC	atT	1	1	B.3	0.000831
S	834	I834V	Atc	Gtc	1	1	C.35	0.000774
S	834	I834del	ATC	---	1	1	C.37	0.000116
S	834	I834del	ATC	---	1	1	P.1	0.000016
S	834	I834del	ATC	---	1	1	P.1.13	0.000898
S	834	I834T	aTc	aCc	1	1	P.1.16	0.000374
S	834	I834T	aTc	aCc	1	1	P.1.17	0.000162
S	834	I834V	Atc	Gtc	1	1	P.1.4	0.000977
S	834	I834I	atC	atT	1	1	P.1.7	0.000319
S	834	I834T	aTc	aCc	1	1	P.2	0.000187
S	834	I834V	Atc	Gtc	1	1	P.2	0.000187
S	834	I834T	aTc	aCc	1	1	Q.1	0.000126
S	834	I834del	ATC	---	1	1	Q.2	0.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.