CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 834

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S834I834VnonsynAtcGtc165116500.99939424062-24064
S834I834VnonsynAtCGtT165110.00060569324062-24064
S834I834TnonsynaTcaCc11041104124062-24064
S834I834IsynatCatT7316950.95075224062-24064
S834I834IsynatCatA731360.049247624062-24064
S834I834FnonsynAtcTtc1161140.98275924062-24064
S834I834FnonsynAtCTtT11620.017241424062-24064
S834I834SnonsynaTcaGc6969124062-24064
S834I834deldelATC---5656124062-24064
S834I834NnonsynaTcaAc4343124062-24064
S834I834MnonsynatCatG1313124062-24064
S834I834LnonsynAtcCtc88124062-24064
S834I834del1delatCat-33124062-24064
S834I834HnonsynATcCAc210.524062-24064
S834I834HnonsynATCCAT210.524062-24064
S834I834RnonsynaTCaGG11124062-24064
S834I834GnonsynATcGGc11124062-24064

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S834I834VAtcGtc16501651All0.000316
S834I834VAtCGtT11651All0
S834I834TaTcaCc11041104All0.000211
S834I834IatCatT695731All0.000133
S834I834IatCatA36731All0.000007
S834I834VAtcGtc562562AY.30.00559
S834I834VAtcGtc518518AY.1030.003216
S834I834TaTcaCc192192AY.440.001169
S834I834IatCatT137141B.1.617.20.000516
S834I834IatCatA4141B.1.617.20.000015
S834I834TaTcaCc124124B.1.5770.085223
S834I834VAtcGtc117117AY.40.000182
S834I834FAtcTtc114116All0.000022
S834I834FAtCTtT2116All0
S834I834TaTcaCc102102AY.40.000159
S834I834IatCatT9696AY.40.000149
S834I834TaTcaCc9595B.1.617.20.000358
S834I834TaTcaCc8484B.1.1.70.000075
S834I834VAtcGtc8282B.1.1.70.000073
S834I834IatCatT6878B.1.1.70.000061
S834I834IatCatA1078B.1.1.70.000009
S834I834VAtcGtc7474AY.46.60.005343
S834I834TaTcaCc7171AY.1190.002507
S834I834SaTcaGc6969All0.000013
S834I834IatCatT6969B.1.243.21
S834I834TaTcaCc6161AY.430.00027
S834I834delATC---5656All0.000011
S834I834IatCatT4848AY.440.000292
S834I834NaTcaAc4343All0.000008
S834I834TaTcaCc4343B.1.20.000379
S834I834VAtcGtc3939B.1.617.20.000147
S834I834IatCatT3737B.1.177.540.022438
S834I834TaTcaCc3030AY.30.000298
S834I834TaTcaCc2929AY.780.044684
S834I834FAtcTtc2929B.1.1.5190.001152
S834I834FAtcTtc2929B.1.1.70.000026
S834I834VAtcGtc2828AY.250.000168
S834I834IatCatT2727R.10.00243
S834I834TaTcaCc2525C.270.462963
S834I834IatCatT2424AY.4.20.000521
S834I834NaTcaAc2323B.1.1.3060.010083
S834I834TaTcaCc2222AK.21
S834I834SaTcaGc1919B.1.1.70.000017
S834I834VAtcGtc1919B.1.20.000167
S834I834FAtcTtc1919B.1.20.000167
S834I834IatCatT1218B.10.00011
S834I834IatCatA618B.10.000055
S834I834TaTcaCc1717AY.1000.000782
S834I834IatCatT1616AY.390.000395
S834I834VAtcGtc1616AY.440.000097
S834I834TaTcaCc1616B.1.1770.000211
S834I834VAtcGtc1616B.1.6280.005638
S834I834VAtcGtc1414AY.50.000289
S834I834VAtcGtc1414B.1.1.4560.777778
S834I834TaTcaCc1414P.10.000221
S834I834MatCatG1313All0.000002
S834I834TaTcaCc1313AY.1030.000081
S834I834SaTcaGc1313B.1.10.000236
S834I834IatCatT1011AY.30.000099
S834I834IatCatA111AY.30.00001
S834I834TaTcaCc1111B.10.000101
S834I834delATC---1111B.1.1.70.00001
S834I834IatCatT1111B.1.438.10.00118
S834I834TaTcaCc1111B.1.438.10.00118
S834I834TaTcaCc99AY.250.000054
S834I834TaTcaCc99AY.390.000222
S834I834IatCatT89AY.430.000035
S834I834IatCatA19AY.430.000004
S834I834IatCatT99AY.920.002585
S834I834VAtcGtc99B.1.1.4330.012821
S834I834LAtcCtc88All0.000002
S834I834FAtcTtc88B.1.1.2840.000859
S834I834IatCatT77AY.230.000488
S834I834VAtcGtc77AY.470.000218
S834I834IatCatT77AY.50.000145
S834I834IatCatT77B.1.10.000127
S834I834IatCatT77B.1.2430.000487
S834I834VAtcGtc66AY.1190.000212
S834I834TaTcaCc66AY.29.10.001323
S834I834VAtcGtc66AY.390.000148
S834I834IatCatT66AY.450.00073
S834I834TaTcaCc66AY.610.000629
S834I834VAtcGtc66AY.70.001176
S834I834VAtcGtc66B.10.000055
S834I834VAtcGtc66B.1.1770.000079
S834I834MatCatG66B.1.4290.000141
S834I834TaTcaCc66B.1.5950.001566
S834I834IatCatT66B.1.6090.002876
S834I834IatCatT55AY.1000.00023
S834I834VAtcGtc55AY.1020.000133
S834I834IatCatT55AY.1020.000133
S834I834IatCatT45AY.1030.000025
S834I834IatCatA15AY.1030.000006
S834I834IatCatT55AY.260.000142
S834I834TaTcaCc55AY.290.000079
S834I834SaTcaGc55AY.40.000008
S834I834TaTcaCc55AY.4.20.000108
S834I834delATC---55AY.430.000022
S834I834VAtcGtc55AY.430.000022
S834I834MatCatG55B.1.1.70.000004
S834I834IatCatT55B.1.3890.00501
S834I834SaTcaGc55B.1.5260.000118
S834I834TaTcaCc55B.1.5260.000118
S834I834TaTcaCc44AY.1170.000338
S834I834VAtcGtc44AY.1180.000251
S834I834VAtcGtc44AY.330.000267
S834I834IatCatT44AY.460.000416
S834I834IatCatT44AY.640.002381
S834I834NaTcaAc44B.1.1.2770.003035
S834I834TaTcaCc44B.1.1.2890.008333
S834I834TaTcaCc44B.1.4270.000202
S834I834NaTcaAc44B.1.5380.032258
S834I834SaTcaGc44B.1.617.20.000015
S834I834del1atCat-33All0.000001
S834I834SaTcaGc33AY.1190.000106
S834I834TaTcaCc33AY.120.000948
S834I834VAtcGtc33AY.1200.000112
S834I834IatCatT33AY.1200.000112
S834I834VAtcGtc33AY.200.000117
S834I834VAtcGtc33AY.230.000209
S834I834VAtcGtc33AY.290.000047
S834I834FAtcTtc33AY.40.000005
S834I834IatCatT33AY.400.002893
S834I834TaTcaCc33AY.420.000121
S834I834VAtcGtc33AY.420.000121
S834I834TaTcaCc33AY.46.60.000217
S834I834TaTcaCc33AY.50.000062
S834I834TaTcaCc33AY.510.002727
S834I834TaTcaCc33AY.90.000203
S834I834VAtcGtc33B.1.1.3110.001074
S834I834IatCatT23B.1.1770.000026
S834I834IatCatA13B.1.1770.000013
S834I834VAtcGtc33B.1.36.290.001552
S834I834TaTcaCc33B.1.5550.066667
S834I834FAtcTtc23B.1.617.20.000008
S834I834FAtCTtT13B.1.617.20.000004
S834I834delATC---33B.1.6210.000266
S834I834VAtcGtc33P.10.000047
S834I834FAtcTtc33P.10.000047
S834I834delATC---33P.1.150.000697
S834I834VAtcGtc33P.1.170.000485
S834I834delATC---220.111111
S834I834FAtcTtc120.055556
S834I834FAtCTtT120.055556
S834I834HATcCAc12All0
S834I834HATCCAT12All0
S834I834TaTcaCc22AY.1050.001286
S834I834VAtcGtc22AY.1130.000285
S834I834IatCatT22AY.1170.000169
S834I834NaTcaAc22AY.200.000078
S834I834TaTcaCc22AY.200.000078
S834I834TaTcaCc22AY.23.10.000835
S834I834VAtcGtc22AY.270.000129
S834I834TaTcaCc22AY.3.10.000171
S834I834IatCatT22AY.330.000134
S834I834NaTcaAc22AY.40.000003
S834I834delATC---22AY.40.000003
S834I834delATC---22AY.4.50.000215
S834I834FAtcTtc22AY.430.000009
S834I834VAtcGtc22AY.450.000243
S834I834TaTcaCc22AY.46.50.000397
S834I834IatCatT22AY.470.000062
S834I834TaTcaCc22AY.470.000062
S834I834SaTcaGc22AY.50.000041
S834I834VAtcGtc22AY.590.001059
S834I834IatCatT22AY.670.000929
S834I834VAtcGtc22AY.690.000373
S834I834FAtcTtc22AY.75.10.000361
S834I834IatCatT22AY.75.10.000361
S834I834TaTcaCc22AY.75.10.000361
S834I834IatCatA22AY.9.20.000073
S834I834VAtcGtc22AY.9.20.000073
S834I834TaTcaCc22AY.910.001461
S834I834VAtcGtc22AY.98.10.000097
S834I834TaTcaCc22AY.98.10.000097
S834I834TaTcaCc22AY.99.20.000184
S834I834delATC---22B.10.000018
S834I834NaTcaAc22B.10.000018
S834I834delATC---22B.1.10.000036
S834I834VAtcGtc22B.1.1.2160.001781
S834I834delATC---22B.1.1.2360.013793
S834I834VAtcGtc22B.1.1.280.000622
S834I834IatCatT22B.1.1.3250.051282
S834I834TaTcaCc22B.1.1.4340.000697
S834I834FAtcTtc22B.1.1770.000026
S834I834delATC---22B.1.177.630.005405
S834I834IatCatA22B.1.20.000018
S834I834delATC---22B.1.20.000018
S834I834SaTcaGc22B.1.20.000018
S834I834SaTcaGc22B.1.2430.000139
S834I834VAtcGtc22B.1.3510.000059
S834I834IatCatT22B.1.360.000292
S834I834FAtcTtc22B.1.4290.000047
S834I834delATC---22B.1.617.20.000008
S834I834VAtcGtc22B.1.6340.006849
S834I834FAtcTtc22B.1.6370.000146
S834I834TaTcaCc22B.6.60.001778
S834I834IatCatA22B.6.60.001778
S834I834IatCatT12D.20.000075
S834I834IatCatA12D.20.000075
S834I834IatCatT22P.10.000032
S834I834VAtcGtc22P.1.160.000748
S834I834VAtcGtc22Q.70.002222
S834I834IatCatT110.055556
S834I834LAtcCtc110.055556
S834I834delATC---11A0.000387
S834I834TaTcaCc11A0.000387
S834I834VAtcGtc11A.20.000662
S834I834LAtcCtc11A.23.10.000704
S834I834IatCatT11A.270.001656
S834I834RaTCaGG11All0
S834I834GATcGGc11All0
S834I834TaTcaCc11AY.1020.000027
S834I834SaTcaGc11AY.1030.000006
S834I834FAtcTtc11AY.1030.000006
S834I834NaTcaAc11AY.1030.000006
S834I834IatCatT11AY.1060.000335
S834I834IatCatT11AY.1070.000466
S834I834VAtcGtc11AY.1110.000183
S834I834FAtcTtc11AY.1110.000183
S834I834del1atCat-11AY.1170.000085
S834I834delATC---11AY.1190.000035
S834I834TaTcaCc11AY.1200.000037
S834I834delATC---11AY.1200.000037
S834I834VAtcGtc11AY.120.10.000321
S834I834IatCatA11AY.16.10.00047
S834I834SaTcaGc11AY.200.000039
S834I834IatCatA11AY.200.000039
S834I834TaTcaCc11AY.230.00007
S834I834TaTcaCc11AY.240.000431
S834I834IatCatA11AY.240.000431
S834I834IatCatA11AY.250.000006
S834I834SaTcaGc11AY.250.000006
S834I834delATC---11AY.250.000006
S834I834TaTcaCc11AY.260.000028
S834I834IatCatT11AY.290.000016
S834I834SaTcaGc11AY.290.000016
S834I834LAtcCtc11AY.30.00001
S834I834SaTcaGc11AY.30.00001
S834I834TaTcaCc11AY.320.000532
S834I834IatCatT11AY.340.000097
S834I834TaTcaCc11AY.340.000097
S834I834TaTcaCc11AY.34.10.00051
S834I834TaTcaCc11AY.360.000148
S834I834TaTcaCc11AY.370.000316
S834I834SaTcaGc11AY.390.000025
S834I834TaTcaCc11AY.39.10.00004
S834I834VAtcGtc11AY.4.20.000022
S834I834NaTcaAc11AY.4.20.000022
S834I834VAtcGtc11AY.4.30.000842
S834I834IatCatT11AY.4.50.000107
S834I834HATCCAT11AY.430.000004
S834I834SaTcaGc11AY.430.000004
S834I834del1atCat-11AY.430.000004
S834I834TaTcaCc11AY.460.000104
S834I834delATC---11AY.46.20.000635
S834I834LAtcCtc11AY.46.40.000165
S834I834IatCatT11AY.46.60.000072
S834I834FAtcTtc11AY.50.000021
S834I834VAtcGtc11AY.530.000288
S834I834TaTcaCc11AY.540.000095
S834I834VAtcGtc11AY.580.000907
S834I834VAtcGtc11AY.60.000041
S834I834VAtcGtc11AY.600.000938
S834I834FAtcTtc11AY.650.000533
S834I834TaTcaCc11AY.680.000274
S834I834IatCatT11AY.70.000196
S834I834VAtcGtc11AY.7.10.000113
S834I834IatCatT11AY.700.000209
S834I834VAtCGtT11AY.750.000056
S834I834RaTCaGG11AY.850.000427
S834I834VAtcGtc11AY.880.000884
S834I834FAtcTtc11AY.9.20.000037
S834I834delATC---11AY.9.20.000037
S834I834VAtcGtc11AY.920.000287
S834I834VAtcGtc11AY.940.000443
S834I834VAtcGtc11AY.950.000761
S834I834IatCatT11AY.960.002075
S834I834delATC---11AY.98.10.000048
S834I834IatCatT11AY.990.001049
S834I834MatCatG11AY.99.20.000092
S834I834SaTcaGc11B.10.000009
S834I834GATcGGc11B.10.000009
S834I834FAtcTtc11B.10.000009
S834I834VAtcGtc11B.1.10.000018
S834I834del1atCat-11B.1.10.000018
S834I834LAtcCtc11B.1.10.000018
S834I834SaTcaGc11B.1.1.1610.003534
S834I834TaTcaCc11B.1.1.1640.005155
S834I834FAtcTtc11B.1.1.1890.001513
S834I834IatCatT11B.1.1.2030.016949
S834I834SaTcaGc11B.1.1.2160.00089
S834I834VAtcGtc11B.1.1.250.000569
S834I834IatCatT11B.1.1.2670.010101
S834I834VAtcGtc11B.1.1.2840.000107
S834I834TaTcaCc11B.1.1.2840.000107
S834I834VAtcGtc11B.1.1.3010.001179
S834I834TaTcaCc11B.1.1.3170.000412
S834I834SaTcaGc11B.1.1.3180.000302
S834I834IatCatT11B.1.1.3480.000796
S834I834VAtcGtc11B.1.1.3980.003226
S834I834delATC---11B.1.1.4090.002833
S834I834LAtcCtc11B.1.1.4090.002833
S834I834TaTcaCc11B.1.1.4320.001266
S834I834TaTcaCc11B.1.1.500.000679
S834I834VAtcGtc11B.1.1.5190.00004
S834I834LAtcCtc11B.1.1.70.000001
S834I834TaTcaCc11B.1.1.700.000341
S834I834VAtcGtc11B.1.1390.000733
S834I834VAtcGtc11B.1.1600.000031
S834I834IatCatT11B.1.1600.000031
S834I834delATC---11B.1.1770.000013
S834I834delATC---11B.1.177.170.000821
S834I834IatCatT11B.1.177.210.000076
S834I834IatCatT11B.1.177.330.001645
S834I834TaTcaCc11B.1.177.40.000211
S834I834SaTcaGc11B.1.177.600.000218
S834I834VAtcGtc11B.1.177.650.000665
S834I834TaTcaCc11B.1.177.810.000189
S834I834VAtcGtc11B.1.2360.002053
S834I834TaTcaCc11B.1.2360.002053
S834I834IatCatT11B.1.2400.000216
S834I834IatCatT11B.1.2580.000067
S834I834delATC---11B.1.2580.000067
S834I834VAtcGtc11B.1.2580.000067
S834I834IatCatA11B.1.3010.005917
S834I834TaTcaCc11B.1.3460.001311
S834I834IatCatT11B.1.3490.000715
S834I834FAtcTtc11B.1.3510.00003
S834I834VAtcGtc11B.1.36.160.001425
S834I834VAtcGtc11B.1.36.180.00042
S834I834TaTcaCc11B.1.3690.000285
S834I834TaTcaCc11B.1.3900.010638
S834I834TaTcaCc11B.1.4090.000781
S834I834HATcCAc11B.1.4270.00005
S834I834NaTcaAc11B.1.4270.00005
S834I834LAtcCtc11B.1.4270.00005
S834I834FAtcTtc11B.1.4270.00005
S834I834IatCatT11B.1.4290.000024
S834I834NaTcaAc11B.1.4290.000024
S834I834SaTcaGc11B.1.4290.000024
S834I834VAtcGtc11B.1.4590.004082
S834I834SaTcaGc11B.1.4970.000315
S834I834VAtcGtc11B.1.5170.000427
S834I834TaTcaCc11B.1.5240.001406
S834I834TaTcaCc11B.1.5250.000113
S834I834IatCatT11B.1.5260.000024
S834I834TaTcaCc11B.1.5440.006024
S834I834IatCatT11B.1.5610.000397
S834I834NaTcaAc11B.1.5770.000687
S834I834FAtcTtc11B.1.5820.000491
S834I834VAtcGtc11B.1.5960.000087
S834I834NaTcaAc11B.1.617.10.000129
S834I834MatCatG11B.1.617.20.000004
S834I834TaTcaCc11B.1.6210.000089
S834I834VAtcGtc11B.1.6370.000073
S834I834delATC---11B.1.6380.052632
S834I834IatCatT11B.30.000831
S834I834VAtcGtc11C.350.000774
S834I834delATC---11C.370.000116
S834I834delATC---11P.10.000016
S834I834delATC---11P.1.130.000898
S834I834TaTcaCc11P.1.160.000374
S834I834TaTcaCc11P.1.170.000162
S834I834VAtcGtc11P.1.40.000977
S834I834IatCatT11P.1.70.000319
S834I834TaTcaCc11P.20.000187
S834I834VAtcGtc11P.20.000187
S834I834TaTcaCc11Q.10.000126
S834I834delATC---11Q.20.000613