CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 833

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S833F833FsynttCttT363363124059-24061
S833F833deldelTTC---5858124059-24061
S833F833SnonsyntTctCc33320.96969724059-24061
S833F833LnonsynTtcCtc33200.60606124059-24061
S833F833LnonsynttCttG33100.3030324059-24061
S833F833LnonsynttCttA3330.090909124059-24061
S833F833SnonsyntTCtCG3310.03030324059-24061
S833F833VnonsynTtcGtc1717124059-24061
S833F833YnonsyntTctAc1111124059-24061
S833F833InonsynTtcAtc430.7524059-24061
S833F833InonsynTtCAtA410.2524059-24061
S833F833del1delTtc-tc22124059-24061
S833F833CnonsyntTctGc22124059-24061
S833F833AnonsynTTCGCT11124059-24061

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S833F833FttCttT363363All0.000069
S833F833FttCttT6969B.1.243.21
S833F833delTTC---5858All0.000011
S833F833FttCttT4646B.1.2430.003201
S833F833FttCttT4242AY.430.000186
S833F833StTctCc3233All0.000006
S833F833LTtcCtc2033All0.000004
S833F833LttCttG1033All0.000002
S833F833LttCttA333All0.000001
S833F833StTCtCG133All0
S833F833FttCttT2828B.1.617.20.000105
S833F833FttCttT2424B.1.1.70.000021
S833F833FttCttT2424B.1.1770.000316
S833F833VTtcGtc1717All0.000003
S833F833FttCttT1414Q.10.001769
S833F833FttCttT1313AY.1020.000345
S833F833FttCttT1313AY.40.00002
S833F833delTTC---1212B.1.1.70.000011
S833F833YtTctAc1111All0.000002
S833F833FttCttT99AY.440.000055
S833F833VTtcGtc88AY.40.000012
S833F833StTctCc77AY.1000.000322
S833F833FttCttT77AY.98.10.000339
S833F833LttCttG67B.1.4290.000141
S833F833LTtcCtc17B.1.4290.000024
S833F833LTtcCtc56B.1.1.70.000004
S833F833LttCttG16B.1.1.70.000001
S833F833StTctCc66B.1.617.20.000023
S833F833FttCttT55AY.1180.000313
S833F833FttCttT55AY.30.00005
S833F833delTTC---55AY.430.000022
S833F833FttCttT55P.10.000079
S833F833ITtcAtc34All0.000001
S833F833ITtCAtA14All0
S833F833FttCttT33AY.1030.000019
S833F833FttCttT33B.1.1.2140.000166
S833F833FttCttT33B.1.3510.000089
S833F833delTTC---33B.1.6210.000266
S833F833FttCttT33C.370.000348
S833F833delTTC---33P.10.000047
S833F833delTTC---33P.1.150.000697
S833F833delTTC---220.111111
S833F833del1Ttc-tc22All0
S833F833CtTctGc22All0
S833F833FttCttT22AY.250.000012
S833F833FttCttT22AY.39.10.000079
S833F833delTTC---22AY.40.000003
S833F833YtTctAc22AY.40.000003
S833F833LttCttG12AY.40.000002
S833F833LTtcCtc12AY.40.000002
S833F833delTTC---22AY.4.50.000215
S833F833StTctCc22AY.410.000588
S833F833LTtcCtc22AY.440.000012
S833F833FttCttT22AY.750.000112
S833F833FttCttT22AY.90.000135
S833F833FttCttT22AY.99.20.000184
S833F833LTtcCtc22B.10.000018
S833F833delTTC---22B.10.000018
S833F833FttCttT22B.10.000018
S833F833delTTC---22B.1.10.000036
S833F833FttCttT22B.1.10.000036
S833F833delTTC---22B.1.1.2360.013793
S833F833FttCttT22B.1.1.2730.013514
S833F833StTctCc22B.1.1.70.000002
S833F833StTctCc22B.1.177.120.000303
S833F833delTTC---22B.1.177.630.005405
S833F833LttCttG12B.1.20.000009
S833F833LTtcCtc12B.1.20.000009
S833F833FttCttT22B.1.2210.000142
S833F833LttCttA22B.1.2630.095238
S833F833StTCtCG12B.1.4270.00005
S833F833StTctCc12B.1.4270.00005
S833F833FttCttT22B.1.5950.000522
S833F833LTtcCtc22B.1.617.20.000008
S833F833delTTC---22B.1.617.20.000008
S833F833YtTctAc22B.1.617.20.000008
S833F833FttCttT110.055556
S833F833delTTC---11A0.000387
S833F833ATTCGCT11All0
S833F833FttCttT11AY.1000.000046
S833F833StTctCc11AY.1020.000027
S833F833VTtcGtc11AY.1030.000006
S833F833ITtcAtc11AY.1170.000085
S833F833delTTC---11AY.1190.000035
S833F833StTctCc11AY.1190.000035
S833F833delTTC---11AY.1200.000037
S833F833FttCttT11AY.1200.000037
S833F833FttCttT11AY.160.00038
S833F833LTtcCtc11AY.250.000006
S833F833CtTctGc11AY.250.000006
S833F833delTTC---11AY.250.000006
S833F833VTtcGtc11AY.30.00001
S833F833StTctCc11AY.3.10.000085
S833F833FttCttT11AY.390.000025
S833F833ITtcAtc11AY.40.000002
S833F833StTctCc11AY.40.000002
S833F833del1Ttc-tc11AY.4.50.000107
S833F833LTtcCtc11AY.4.50.000107
S833F833FttCttT11AY.420.00004
S833F833VTtcGtc11AY.430.000004
S833F833ATTCGCT11AY.430.000004
S833F833LTtcCtc11AY.430.000004
S833F833YtTctAc11AY.430.000004
S833F833YtTctAc11AY.440.000006
S833F833FttCttT11AY.450.000122
S833F833delTTC---11AY.46.20.000635
S833F833FttCttT11AY.46.40.000165
S833F833FttCttT11AY.5.40.000277
S833F833YtTctAc11AY.550.000917
S833F833FttCttT11AY.670.000464
S833F833StTctCc11AY.680.000274
S833F833VTtcGtc11AY.690.000187
S833F833FttCttT11AY.710.000475
S833F833FttCttT11AY.75.10.00018
S833F833VTtcGtc11AY.850.000427
S833F833FttCttT11AY.9.20.000037
S833F833delTTC---11AY.9.20.000037
S833F833delTTC---11AY.98.10.000048
S833F833StTctCc11AY.99.20.000092
S833F833StTctCc11B.1.10.000018
S833F833FttCttT11B.1.1.1530.001095
S833F833FttCttT11B.1.1.250.000569
S833F833FttCttT11B.1.1.280.000311
S833F833FttCttT11B.1.1.3050.003861
S833F833VTtcGtc11B.1.1.3690.000446
S833F833delTTC---11B.1.1.4090.002833
S833F833CtTctGc11B.1.1.70.000001
S833F833del1Ttc-tc11B.1.1.70.000001
S833F833FttCttT11B.1.1600.000031
S833F833delTTC---11B.1.1770.000013
S833F833LTtcCtc11B.1.1770.000013
S833F833StTctCc11B.1.1770.000013
S833F833delTTC---11B.1.177.170.000821
S833F833LTtcCtc11B.1.177.580.001332
S833F833YtTctAc11B.1.20.000009
S833F833FttCttT11B.1.20.000009
S833F833delTTC---11B.1.20.000009
S833F833YtTctAc11B.1.2340.000132
S833F833delTTC---11B.1.2580.000067
S833F833VTtcGtc11B.1.258.100.011364
S833F833StTctCc11B.1.3510.00003
S833F833FttCttT11B.1.351.20.000303
S833F833VTtcGtc11B.1.3950.007042
S833F833FttCttT11B.1.4020.009804
S833F833YtTctAc11B.1.4110.003704
S833F833LttCttG11B.1.4270.00005
S833F833VTtcGtc11B.1.4290.000024
S833F833StTctCc11B.1.438.10.000107
S833F833YtTctAc11B.1.4990.00105
S833F833FttCttT11B.1.5260.000024
S833F833FttCttT11B.1.5460.003704
S833F833StTctCc11B.1.617.10.000129
S833F833ITtcAtc11B.1.617.20.000004
S833F833delTTC---11B.1.6380.052632
S833F833ITtCAtA11B.6.60.000889
S833F833LttCttA11B.6.60.000889
S833F833FttCttT11C.160.00106
S833F833delTTC---11C.370.000116
S833F833StTctCc11D.20.000075
S833F833FttCttT11D.20.000075
S833F833delTTC---11P.1.130.000898
S833F833FttCttT11P.1.150.000232
S833F833FttCttT11P.1.70.000319
S833F833delTTC---11Q.20.000613
S833F833LTtcCtc11W.10.008696