CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 831

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	831	A831V		nonsyn	gCt	gTt	2087	2084	0.998563	24053-24055
S	831	A831V		nonsyn	gCT	gTC	2087	2	0.000958313	24053-24055
S	831	A831V		nonsyn	gCT	gTG	2087	1	0.000479157	24053-24055
S	831	A831S		nonsyn	Gct	Tct	1111	1111	1	24053-24055
S	831	A831A		syn	gcT	gcC	502	362	0.721116	24053-24055
S	831	A831A		syn	gcT	gcA	502	119	0.237052	24053-24055
S	831	A831A		syn	gcT	gcG	502	21	0.0418327	24053-24055
S	831	A831T		nonsyn	Gct	Act	83	82	0.987952	24053-24055
S	831	A831T		nonsyn	GcT	AcC	83	1	0.0120482	24053-24055
S	831	A831del		del	GCT	---	58	58	1	24053-24055
S	831	A831D		nonsyn	gCt	gAt	16	16	1	24053-24055
S	831	A831G		nonsyn	gCt	gGt	4	4	1	24053-24055
S	831	A831P		nonsyn	Gct	Cct	3	3	1	24053-24055
S	831	A831del1		del	Gct	-ct	2	2	1	24053-24055
S	831	A831del2		del	gCT	g--	2	2	1	24053-24055
S	831	A831I		nonsyn	GCt	ATt	2	1	0.5	24053-24055
S	831	A831I		nonsyn	GCT	ATC	2	1	0.5	24053-24055
S	831	A831F		nonsyn	GCt	TTt	1	1	1	24053-24055

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	831	A831V	gCt	gTt	2084	2087	All	0.000399
S	831	A831V	gCT	gTC	2	2087	All	0
S	831	A831V	gCT	gTG	1	2087	All	0
S	831	A831S	Gct	Tct	1111	1111	All	0.000212
S	831	A831V	gCt	gTt	910	910	B.1.1.7	0.000815
S	831	A831S	Gct	Tct	605	605	AY.26	0.017128
S	831	A831A	gcT	gcC	362	502	All	0.000069
S	831	A831A	gcT	gcA	119	502	All	0.000023
S	831	A831A	gcT	gcG	21	502	All	0.000004
S	831	A831V	gCt	gTt	265	265	AY.4	0.000412
S	831	A831S	Gct	Tct	219	219	B.1.617.2	0.000825
S	831	A831A	gcT	gcC	146	149	AY.44	0.000889
S	831	A831A	gcT	gcG	2	149	AY.44	0.000012
S	831	A831A	gcT	gcA	1	149	AY.44	0.000006
S	831	A831V	gCt	gTt	148	148	AY.43	0.000656
S	831	A831V	gCt	gTt	94	94	B.1.617.2	0.000354
S	831	A831T	Gct	Act	82	83	All	0.000016
S	831	A831T	GcT	AcC	1	83	All	0
S	831	A831A	gcT	gcC	46	68	B.1.1.7	0.000041
S	831	A831A	gcT	gcA	17	68	B.1.1.7	0.000015
S	831	A831A	gcT	gcG	5	68	B.1.1.7	0.000004
S	831	A831V	gCt	gTt	59	59	B.1.1.17	0.983333
S	831	A831del	GCT	---	58	58	All	0.000011
S	831	A831S	Gct	Tct	54	54	B.1.1.7	0.000048
S	831	A831A	gcT	gcA	50	50	B.1.177.21	0.003824
S	831	A831A	gcT	gcC	30	40	B.1.617.2	0.000113
S	831	A831A	gcT	gcA	8	40	B.1.617.2	0.00003
S	831	A831A	gcT	gcG	2	40	B.1.617.2	0.000008
S	831	A831S	Gct	Tct	37	37	AY.44	0.000225
S	831	A831V	gCt	gTt	35	35	AY.25	0.000211
S	831	A831V	gCt	gTt	33	33	AY.103	0.000205
S	831	A831S	Gct	Tct	31	31	AY.4	0.000048
S	831	A831V	gCt	gTt	31	31	AY.61	0.003248
S	831	A831S	Gct	Tct	26	26	AY.119	0.000918
S	831	A831A	gcT	gcC	20	25	AY.4	0.000031
S	831	A831A	gcT	gcA	3	25	AY.4	0.000005
S	831	A831A	gcT	gcG	2	25	AY.4	0.000003
S	831	A831V	gCt	gTt	24	24	AY.54	0.002288
S	831	A831V	gCt	gTt	22	22	B.1.160	0.000686
S	831	A831V	gCt	gTt	22	22	P.1	0.000347
S	831	A831S	Gct	Tct	19	19	AY.43	0.000084
S	831	A831V	gCt	gTt	18	18	AY.3	0.000179
S	831	A831V	gCt	gTt	18	18	AY.75.1	0.003246
S	831	A831V	gCt	gTt	18	18	B.1.2	0.000158
S	831	A831V	gCt	gTt	17	17	AY.26	0.000481
S	831	A831T	Gct	Act	17	17	B.1.177	0.000224
S	831	A831V	gCt	gTt	17	17	B.1.427	0.000858
S	831	A831D	gCt	gAt	16	16	All	0.000003
S	831	A831T	Gct	Act	16	16	AY.44	0.000097
S	831	A831V	gCt	gTt	15	15	AY.44	0.000091
S	831	A831V	gCt	gTt	13	13	AY.102	0.000345
S	831	A831A	gcT	gcC	13	13	AY.71	0.006176
S	831	A831del	GCT	---	13	13	B.1.1.7	0.000012
S	831	A831V	gCt	gTt	13	13	B.1.177	0.000171
S	831	A831S	Gct	Tct	12	12	B.1.160	0.000374
S	831	A831A	gcT	gcC	11	12	B.1.526	0.000259
S	831	A831A	gcT	gcG	1	12	B.1.526	0.000024
S	831	A831V	gCt	gTt	11	11	AY.114	0.002542
S	831	A831V	gCt	gTt	11	11	AY.20	0.000428
S	831	A831V	gCt	gTt	11	11	AY.39	0.000272
S	831	A831A	gcT	gcC	6	11	B.1.2	0.000053
S	831	A831A	gcT	gcA	5	11	B.1.2	0.000044
S	831	A831A	gcT	gcA	11	11	C.37	0.001277
S	831	A831V	gCt	gTt	10	10	AY.23	0.000697
S	831	A831A	gcT	gcC	7	10	AY.43	0.000031
S	831	A831A	gcT	gcA	3	10	AY.43	0.000013
S	831	A831S	Gct	Tct	10	10	AY.5.3	0.003374
S	831	A831V	gCt	gTt	10	10	B.1	0.000092
S	831	A831V	gCt	gTt	9	9	B.1.351	0.000268
S	831	A831V	gCt	gTt	8	8	AY.35	0.001864
S	831	A831V	gCt	gTt	8	8	AY.9.2	0.000294
S	831	A831V	gCt	gTt	8	8	B.1.1	0.000145
S	831	A831T	Gct	Act	8	8	B.1.617.2	0.00003
S	831	A831S	Gct	Tct	7	7	A.2.2	0.011824
S	831	A831V	gCt	gTt	7	7	AY.16	0.002658
S	831	A831V	gCt	gTt	7	7	AY.42	0.000282
S	831	A831T	Gct	Act	7	7	B.1.1.7	0.000006
S	831	A831V	gCt	gTt	7	7	B.1.429	0.000165
S	831	A831S	Gct	Tct	7	7	B.1.526	0.000165
S	831	A831V	gCt	gTt	6	6	AY.29	0.000095
S	831	A831A	gcT	gcA	5	6	B.1.1.216	0.004452
S	831	A831A	gcT	gcC	1	6	B.1.1.216	0.00089
S	831	A831V	gCt	gTt	6	6	B.1.177.7	0.000989
S	831	A831A	gcT	gcC	6	6	B.1.351	0.000178
S	831	A831V	gCt	gTt	6	6	R.1	0.00054
S	831	A831S	Gct	Tct	5	5	AY.103	0.000031
S	831	A831A	gcT	gcC	5	5	AY.121	0.000677
S	831	A831S	Gct	Tct	5	5	AY.39	0.000124
S	831	A831T	Gct	Act	5	5	AY.4.2	0.000108
S	831	A831del	GCT	---	5	5	AY.43	0.000022
S	831	A831T	Gct	Act	5	5	AY.43	0.000022
S	831	A831S	Gct	Tct	5	5	AY.46.6	0.000361
S	831	A831S	Gct	Tct	5	5	AY.71	0.002375
S	831	A831V	gCt	gTt	4	5	AY.75	0.000224
S	831	A831V	gCT	gTC	1	5	AY.75	0.000056
S	831	A831A	gcT	gcC	4	5	B.1	0.000037
S	831	A831A	gcT	gcA	1	5	B.1	0.000009
S	831	A831V	gCt	gTt	5	5	B.1.1.176	0.002197
S	831	A831V	gCt	gTt	5	5	B.1.243	0.000348
S	831	A831V	gCt	gTt	5	5	B.1.637	0.000365
S	831	A831V	gCt	gTt	5	5	B.38	0.119048
S	831	A831A	gcT	gcC	4	5	D.2	0.0003
S	831	A831A	gcT	gcG	1	5	D.2	0.000075
S	831	A831V	gCt	gTt	4	4	A.2.5	0.001996
S	831	A831G	gCt	gGt	4	4	All	0.000001
S	831	A831A	gcT	gcC	2	4	AY.102	0.000053
S	831	A831A	gcT	gcA	1	4	AY.102	0.000027
S	831	A831A	gcT	gcG	1	4	AY.102	0.000027
S	831	A831A	gcT	gcC	4	4	AY.103	0.000025
S	831	A831V	gCt	gTt	4	4	AY.116	0.001147
S	831	A831S	Gct	Tct	4	4	AY.25	0.000024
S	831	A831A	gcT	gcC	4	4	AY.39	0.000099
S	831	A831V	gCt	gTt	4	4	AY.4.2	0.000087
S	831	A831V	gCt	gTt	4	4	AY.46.6	0.000289
S	831	A831S	Gct	Tct	4	4	AY.47	0.000124
S	831	A831A	gcT	gcC	3	4	AY.47	0.000093
S	831	A831A	gcT	gcA	1	4	AY.47	0.000031
S	831	A831V	gCt	gTt	4	4	AY.5	0.000083
S	831	A831V	gCt	gTt	4	4	AY.5.4	0.001107
S	831	A831V	gCt	gTt	4	4	AY.9	0.00027
S	831	A831A	gcT	gcC	4	4	AY.98	0.000316
S	831	A831V	gCt	gTt	3	4	AY.98.1	0.000145
S	831	A831V	gCT	gTC	1	4	AY.98.1	0.000048
S	831	A831V	gCt	gTt	4	4	AY.99.2	0.000369
S	831	A831V	gCt	gTt	4	4	B.1.1.44	0.009639
S	831	A831V	gCt	gTt	4	4	B.1.1.519	0.000159
S	831	A831D	gCt	gAt	4	4	B.1.1.7	0.000004
S	831	A831V	gCt	gTt	4	4	B.1.160.7	0.008316
S	831	A831V	gCt	gTt	4	4	D.2	0.0003
S	831	A831A	gcT	gcC	3	4	P.1	0.000047
S	831	A831A	gcT	gcA	1	4	P.1	0.000016
S	831	A831P	Gct	Cct	3	3	All	0.000001
S	831	A831V	gCt	gTt	3	3	AY.119	0.000106
S	831	A831A	gcT	gcC	2	3	AY.23	0.000139
S	831	A831A	gcT	gcG	1	3	AY.23	0.00007
S	831	A831S	Gct	Tct	3	3	AY.33	0.0002
S	831	A831V	gCt	gTt	3	3	AY.33	0.0002
S	831	A831del	GCT	---	3	3	AY.4.5	0.000322
S	831	A831V	gCt	gTt	3	3	AY.45	0.000365
S	831	A831V	gCt	gTt	3	3	AY.46	0.000312
S	831	A831S	Gct	Tct	3	3	AY.61	0.000314
S	831	A831V	gCt	gTt	3	3	AY.62	0.001307
S	831	A831V	gCt	gTt	3	3	AY.7.1	0.000338
S	831	A831A	gcT	gcC	2	3	AY.98.1	0.000097
S	831	A831A	gcT	gcG	1	3	AY.98.1	0.000048
S	831	A831S	Gct	Tct	3	3	B.1	0.000027
S	831	A831V	gCt	gTt	3	3	B.1.351.3	0.002629
S	831	A831S	Gct	Tct	3	3	B.1.36.29	0.001552
S	831	A831V	gCt	gTt	3	3	B.1.36.29	0.001552
S	831	A831A	gcT	gcC	3	3	B.1.523	0.007353
S	831	A831T	Gct	Act	3	3	B.1.621	0.000266
S	831	A831del	GCT	---	3	3	B.1.621	0.000266
S	831	A831del	GCT	---	3	3	P.1	0.000047
S	831	A831del	GCT	---	3	3	P.1.15	0.000697
S	831	A831V	gCt	gTt	3	3	Q.1	0.000379
S	831	A831V	gCt	gTt	3	3	Z.1	0.008671
S	831	A831del	GCT	---	2	2		0.111111
S	831	A831V	gCt	gTt	1	2		0.055556
S	831	A831V	gCT	gTG	1	2		0.055556
S	831	A831del1	Gct	-ct	2	2	All	0
S	831	A831del2	gCT	g--	2	2	All	0
S	831	A831I	GCt	ATt	1	2	All	0
S	831	A831I	GCT	ATC	1	2	All	0
S	831	A831S	Gct	Tct	2	2	AY.100	0.000092
S	831	A831T	Gct	Act	2	2	AY.102	0.000053
S	831	A831T	Gct	Act	2	2	AY.103	0.000012
S	831	A831V	gCt	gTt	2	2	AY.113	0.000285
S	831	A831S	Gct	Tct	2	2	AY.121	0.000271
S	831	A831V	gCt	gTt	2	2	AY.16.1	0.00094
S	831	A831V	gCt	gTt	2	2	AY.2	0.000712
S	831	A831A	gcT	gcG	1	2	AY.25	0.000006
S	831	A831A	gcT	gcC	1	2	AY.25	0.000006
S	831	A831V	gCt	gTt	2	2	AY.27	0.000129
S	831	A831V	gCt	gTt	2	2	AY.36	0.000296
S	831	A831D	gCt	gAt	2	2	AY.4	0.000003
S	831	A831T	Gct	Act	2	2	AY.4	0.000003
S	831	A831del	GCT	---	2	2	AY.4	0.000003
S	831	A831T	Gct	Act	2	2	AY.42	0.00008
S	831	A831G	gCt	gGt	2	2	AY.43	0.000009
S	831	A831V	gCt	gTt	2	2	AY.47	0.000062
S	831	A831S	Gct	Tct	2	2	AY.5	0.000041
S	831	A831A	gcT	gcC	2	2	AY.5	0.000041
S	831	A831V	gCt	gTt	2	2	AY.55	0.001835
S	831	A831V	gCt	gTt	2	2	AY.6	0.000082
S	831	A831A	gcT	gcC	2	2	AY.73	0.001331
S	831	A831V	gCt	gTt	2	2	AY.98	0.000158
S	831	A831T	Gct	Act	1	2	AY.98.1	0.000048
S	831	A831T	GcT	AcC	1	2	AY.98.1	0.000048
S	831	A831I	GCT	ATC	1	2	AY.98.1	0.000048
S	831	A831I	GCt	ATt	1	2	AY.98.1	0.000048
S	831	A831del	GCT	---	2	2	B.1	0.000018
S	831	A831A	gcT	gcC	2	2	B.1.1	0.000036
S	831	A831del	GCT	---	2	2	B.1.1.236	0.013793
S	831	A831A	gcT	gcA	2	2	B.1.1.261	0.017241
S	831	A831V	gCt	gTt	2	2	B.1.1.318	0.000604
S	831	A831A	gcT	gcC	2	2	B.1.177.15	0.001262
S	831	A831V	gCt	gTt	2	2	B.1.177.45	0.000762
S	831	A831del	GCT	---	2	2	B.1.177.63	0.005405
S	831	A831V	gCt	gTt	2	2	B.1.234	0.000264
S	831	A831A	gcT	gcC	2	2	B.1.36	0.000292
S	831	A831A	gcT	gcA	1	2	B.1.429	0.000024
S	831	A831A	gcT	gcC	1	2	B.1.429	0.000024
S	831	A831V	gCt	gTt	2	2	B.1.466.2	0.000782
S	831	A831S	Gct	Tct	2	2	B.1.509	0.001732
S	831	A831S	Gct	Tct	2	2	B.1.525	0.000226
S	831	A831S	Gct	Tct	2	2	B.1.617.1	0.000258
S	831	A831del	GCT	---	2	2	B.1.617.2	0.000008
S	831	A831D	gCt	gAt	2	2	B.1.617.2	0.000008
S	831	A831V	gCt	gTt	2	2	B.26	0.029412
S	831	A831V	gCt	gTt	2	2	P.1.15	0.000465
S	831	A831S	Gct	Tct	2	2	Q.8	0.00033
S	831	A831A	gcT	gcG	1	1		0.055556
S	831	A831V	gCt	gTt	1	1	A	0.000387
S	831	A831del	GCT	---	1	1	A	0.000387
S	831	A831V	gCt	gTt	1	1	A.2.5.2	0.001572
S	831	A831A	gcT	gcG	1	1	A.25	0.018182
S	831	A831F	GCt	TTt	1	1	All	0
S	831	A831V	gCt	gTt	1	1	AY.1	0.000396
S	831	A831V	gCt	gTt	1	1	AY.100	0.000046
S	831	A831del1	Gct	-ct	1	1	AY.103	0.000006
S	831	A831V	gCt	gTt	1	1	AY.110	0.000113
S	831	A831V	gCt	gTt	1	1	AY.117	0.000085
S	831	A831A	gcT	gcC	1	1	AY.117	0.000085
S	831	A831A	gcT	gcC	1	1	AY.118	0.000063
S	831	A831V	gCt	gTt	1	1	AY.118	0.000063
S	831	A831del	GCT	---	1	1	AY.119	0.000035
S	831	A831A	gcT	gcC	1	1	AY.119	0.000035
S	831	A831S	Gct	Tct	1	1	AY.12	0.000316
S	831	A831T	Gct	Act	1	1	AY.120	0.000037
S	831	A831del	GCT	---	1	1	AY.120	0.000037
S	831	A831D	gCt	gAt	1	1	AY.120	0.000037
S	831	A831V	gCt	gTt	1	1	AY.120	0.000037
S	831	A831V	gCt	gTt	1	1	AY.121	0.000135
S	831	A831V	gCt	gTt	1	1	AY.14	0.000088
S	831	A831A	gcT	gcC	1	1	AY.14	0.000088
S	831	A831A	gcT	gcC	1	1	AY.20	0.000039
S	831	A831D	gCt	gAt	1	1	AY.25	0.000006
S	831	A831del	GCT	---	1	1	AY.25	0.000006
S	831	A831A	gcT	gcA	1	1	AY.26	0.000028
S	831	A831F	GCt	TTt	1	1	AY.26	0.000028
S	831	A831del	GCT	---	1	1	AY.29	0.000016
S	831	A831T	Gct	Act	1	1	AY.29	0.000016
S	831	A831T	Gct	Act	1	1	AY.3	0.00001
S	831	A831A	gcT	gcC	1	1	AY.3	0.00001
S	831	A831T	Gct	Act	1	1	AY.33	0.000067
S	831	A831A	gcT	gcC	1	1	AY.34	0.000097
S	831	A831V	gCt	gTt	1	1	AY.34	0.000097
S	831	A831V	gCt	gTt	1	1	AY.34.1	0.00051
S	831	A831S	Gct	Tct	1	1	AY.36	0.000148
S	831	A831V	gCt	gTt	1	1	AY.39.1	0.00004
S	831	A831A	gcT	gcA	1	1	AY.39.1	0.00004
S	831	A831D	gCt	gAt	1	1	AY.39.1	0.00004
S	831	A831S	Gct	Tct	1	1	AY.39.1	0.00004
S	831	A831S	Gct	Tct	1	1	AY.4.2	0.000022
S	831	A831T	Gct	Act	1	1	AY.45	0.000122
S	831	A831S	Gct	Tct	1	1	AY.45	0.000122
S	831	A831S	Gct	Tct	1	1	AY.46	0.000104
S	831	A831del	GCT	---	1	1	AY.46.2	0.000635
S	831	A831S	Gct	Tct	1	1	AY.46.3	0.000934
S	831	A831V	gCt	gTt	1	1	AY.46.4	0.000165
S	831	A831T	Gct	Act	1	1	AY.46.5	0.000198
S	831	A831S	Gct	Tct	1	1	AY.5.4	0.000277
S	831	A831V	gCt	gTt	1	1	AY.52	0.000814
S	831	A831A	gcT	gcC	1	1	AY.55	0.000917
S	831	A831G	gCt	gGt	1	1	AY.55	0.000917
S	831	A831S	Gct	Tct	1	1	AY.55	0.000917
S	831	A831V	gCt	gTt	1	1	AY.59	0.00053
S	831	A831D	gCt	gAt	1	1	AY.61	0.000105
S	831	A831S	Gct	Tct	1	1	AY.67	0.000464
S	831	A831V	gCt	gTt	1	1	AY.67	0.000464
S	831	A831V	gCt	gTt	1	1	AY.68	0.000274
S	831	A831A	gcT	gcA	1	1	AY.70	0.000209
S	831	A831V	gCt	gTt	1	1	AY.70	0.000209
S	831	A831A	gcT	gcG	1	1	AY.75	0.000056
S	831	A831S	Gct	Tct	1	1	AY.75.1	0.00018
S	831	A831S	Gct	Tct	1	1	AY.78	0.001541
S	831	A831T	Gct	Act	1	1	AY.84	0.000437
S	831	A831T	Gct	Act	1	1	AY.85	0.000427
S	831	A831V	gCt	gTt	1	1	AY.87	0.000833
S	831	A831S	Gct	Tct	1	1	AY.87	0.000833
S	831	A831V	gCt	gTt	1	1	AY.9.1	0.000084
S	831	A831S	Gct	Tct	1	1	AY.9.2	0.000037
S	831	A831del	GCT	---	1	1	AY.9.2	0.000037
S	831	A831S	Gct	Tct	1	1	AY.98	0.000079
S	831	A831S	Gct	Tct	1	1	AY.98.1	0.000048
S	831	A831S	Gct	Tct	1	1	B	0.000128
S	831	A831D	gCt	gAt	1	1	B.1	0.000009
S	831	A831del2	gCT	g--	1	1	B.1.1	0.000018
S	831	A831D	gCt	gAt	1	1	B.1.1	0.000018
S	831	A831del	GCT	---	1	1	B.1.1	0.000018
S	831	A831V	gCt	gTt	1	1	B.1.1.1	0.000327
S	831	A831S	Gct	Tct	1	1	B.1.1.135	0.004695
S	831	A831D	gCt	gAt	1	1	B.1.1.194	0.00495
S	831	A831A	gcT	gcC	1	1	B.1.1.213	0.021739
S	831	A831V	gCt	gTt	1	1	B.1.1.232	0.001815
S	831	A831S	Gct	Tct	1	1	B.1.1.25	0.000569
S	831	A831V	gCt	gTt	1	1	B.1.1.253	0.002506
S	831	A831A	gcT	gcC	1	1	B.1.1.306	0.000438
S	831	A831V	gCt	gTt	1	1	B.1.1.312	0.001912
S	831	A831V	gCt	gTt	1	1	B.1.1.317	0.000412
S	831	A831V	gCt	gTt	1	1	B.1.1.33	0.000421
S	831	A831S	Gct	Tct	1	1	B.1.1.375	0.011905
S	831	A831P	Gct	Cct	1	1	B.1.1.376	0.005952
S	831	A831V	gCt	gTt	1	1	B.1.1.4	0.002976
S	831	A831del	GCT	---	1	1	B.1.1.409	0.002833
S	831	A831A	gcT	gcC	1	1	B.1.1.413	0.006897
S	831	A831A	gcT	gcC	1	1	B.1.1.50	0.000679
S	831	A831A	gcT	gcG	1	1	B.1.1.519	0.00004
S	831	A831V	gCt	gTt	1	1	B.1.1.83	0.00271
S	831	A831A	gcT	gcA	1	1	B.1.160	0.000031
S	831	A831V	gCt	gTt	1	1	B.1.160.16	0.000929
S	831	A831V	gCt	gTt	1	1	B.1.164	0.014925
S	831	A831S	Gct	Tct	1	1	B.1.177	0.000013
S	831	A831del	GCT	---	1	1	B.1.177	0.000013
S	831	A831A	gcT	gcC	1	1	B.1.177	0.000013
S	831	A831V	gCt	gTt	1	1	B.1.177.16	0.000664
S	831	A831del	GCT	---	1	1	B.1.177.17	0.000821
S	831	A831T	Gct	Act	1	1	B.1.177.44	0.000519
S	831	A831A	gcT	gcA	1	1	B.1.177.7	0.000165
S	831	A831V	gCt	gTt	1	1	B.1.177.73	0.000566
S	831	A831S	Gct	Tct	1	1	B.1.177.81	0.000189
S	831	A831T	Gct	Act	1	1	B.1.190	0.01
S	831	A831V	gCt	gTt	1	1	B.1.192	0.009259
S	831	A831P	Gct	Cct	1	1	B.1.2	0.000009
S	831	A831del	GCT	---	1	1	B.1.2	0.000009
S	831	A831A	gcT	gcC	1	1	B.1.214	0.003663
S	831	A831V	gCt	gTt	1	1	B.1.214.2	0.0006
S	831	A831A	gcT	gcC	1	1	B.1.214.2	0.0006
S	831	A831A	gcT	gcC	1	1	B.1.232	0.000537
S	831	A831V	gCt	gTt	1	1	B.1.258	0.000067
S	831	A831del	GCT	---	1	1	B.1.258	0.000067
S	831	A831V	gCt	gTt	1	1	B.1.258.17	0.000104
S	831	A831A	gcT	gcC	1	1	B.1.279	0.000514
S	831	A831S	Gct	Tct	1	1	B.1.311	0.000275
S	831	A831A	gcT	gcC	1	1	B.1.336	0.002439
S	831	A831V	gCt	gTt	1	1	B.1.349	0.000715
S	831	A831S	Gct	Tct	1	1	B.1.351	0.00003
S	831	A831D	gCt	gAt	1	1	B.1.351	0.00003
S	831	A831V	gCt	gTt	1	1	B.1.36	0.000146
S	831	A831S	Gct	Tct	1	1	B.1.36.22	0.001208
S	831	A831V	gCt	gTt	1	1	B.1.36.36	0.000602
S	831	A831S	Gct	Tct	1	1	B.1.36.38	0.001642
S	831	A831A	gcT	gcC	1	1	B.1.369	0.000285
S	831	A831A	gcT	gcA	1	1	B.1.396	0.000706
S	831	A831V	gCt	gTt	1	1	B.1.400	0.000429
S	831	A831S	Gct	Tct	1	1	B.1.427	0.00005
S	831	A831P	Gct	Cct	1	1	B.1.429	0.000024
S	831	A831A	gcT	gcC	1	1	B.1.466.2	0.000391
S	831	A831V	gCt	gTt	1	1	B.1.517	0.000427
S	831	A831V	gCt	gTt	1	1	B.1.530	0.007143
S	831	A831V	gCt	gTt	1	1	B.1.560	0.00463
S	831	A831V	gCt	gTt	1	1	B.1.561	0.000397
S	831	A831A	gcT	gcC	1	1	B.1.564	0.000426
S	831	A831T	Gct	Act	1	1	B.1.577	0.000687
S	831	A831A	gcT	gcA	1	1	B.1.596	0.000087
S	831	A831S	Gct	Tct	1	1	B.1.597	0.00463
S	831	A831S	Gct	Tct	1	1	B.1.609	0.000479
S	831	A831A	gcT	gcC	1	1	B.1.617.1	0.000129
S	831	A831G	gCt	gGt	1	1	B.1.617.2	0.000004
S	831	A831del1	Gct	-ct	1	1	B.1.617.2	0.000004
S	831	A831T	Gct	Act	1	1	B.1.637	0.000073
S	831	A831del	GCT	---	1	1	B.1.638	0.052632
S	831	A831V	gCt	gTt	1	1	B.1.76	0.011364
S	831	A831V	gCt	gTt	1	1	B.15	0.017544
S	831	A831V	gCt	gTt	1	1	B.6	0.00091
S	831	A831S	Gct	Tct	1	1	B.6	0.00091
S	831	A831A	gcT	gcA	1	1	B.6.6	0.000889
S	831	A831A	gcT	gcA	1	1	C.36.1	0.004149
S	831	A831V	gCt	gTt	1	1	C.36.3	0.000567
S	831	A831del	GCT	---	1	1	C.37	0.000116
S	831	A831A	gcT	gcC	1	1	N.5	0.001767
S	831	A831del	GCT	---	1	1	P.1.13	0.000898
S	831	A831V	gCt	gTt	1	1	P.1.17	0.000162
S	831	A831del2	gCT	g--	1	1	Q.2	0.000613
S	831	A831A	gcT	gcC	1	1	Q.4	0.000455
S	831	A831V	gCt	gTt	1	1	W.3	0.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.