CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 831

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S831A831VnonsyngCtgTt208720840.99856324053-24055
S831A831VnonsyngCTgTC208720.00095831324053-24055
S831A831VnonsyngCTgTG208710.00047915724053-24055
S831A831SnonsynGctTct11111111124053-24055
S831A831AsyngcTgcC5023620.72111624053-24055
S831A831AsyngcTgcA5021190.23705224053-24055
S831A831AsyngcTgcG502210.041832724053-24055
S831A831TnonsynGctAct83820.98795224053-24055
S831A831TnonsynGcTAcC8310.012048224053-24055
S831A831deldelGCT---5858124053-24055
S831A831DnonsyngCtgAt1616124053-24055
S831A831GnonsyngCtgGt44124053-24055
S831A831PnonsynGctCct33124053-24055
S831A831del1delGct-ct22124053-24055
S831A831del2delgCTg--22124053-24055
S831A831InonsynGCtATt210.524053-24055
S831A831InonsynGCTATC210.524053-24055
S831A831FnonsynGCtTTt11124053-24055

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S831A831VgCtgTt20842087All0.000399
S831A831VgCTgTC22087All0
S831A831VgCTgTG12087All0
S831A831SGctTct11111111All0.000212
S831A831VgCtgTt910910B.1.1.70.000815
S831A831SGctTct605605AY.260.017128
S831A831AgcTgcC362502All0.000069
S831A831AgcTgcA119502All0.000023
S831A831AgcTgcG21502All0.000004
S831A831VgCtgTt265265AY.40.000412
S831A831SGctTct219219B.1.617.20.000825
S831A831AgcTgcC146149AY.440.000889
S831A831AgcTgcG2149AY.440.000012
S831A831AgcTgcA1149AY.440.000006
S831A831VgCtgTt148148AY.430.000656
S831A831VgCtgTt9494B.1.617.20.000354
S831A831TGctAct8283All0.000016
S831A831TGcTAcC183All0
S831A831AgcTgcC4668B.1.1.70.000041
S831A831AgcTgcA1768B.1.1.70.000015
S831A831AgcTgcG568B.1.1.70.000004
S831A831VgCtgTt5959B.1.1.170.983333
S831A831delGCT---5858All0.000011
S831A831SGctTct5454B.1.1.70.000048
S831A831AgcTgcA5050B.1.177.210.003824
S831A831AgcTgcC3040B.1.617.20.000113
S831A831AgcTgcA840B.1.617.20.00003
S831A831AgcTgcG240B.1.617.20.000008
S831A831SGctTct3737AY.440.000225
S831A831VgCtgTt3535AY.250.000211
S831A831VgCtgTt3333AY.1030.000205
S831A831SGctTct3131AY.40.000048
S831A831VgCtgTt3131AY.610.003248
S831A831SGctTct2626AY.1190.000918
S831A831AgcTgcC2025AY.40.000031
S831A831AgcTgcA325AY.40.000005
S831A831AgcTgcG225AY.40.000003
S831A831VgCtgTt2424AY.540.002288
S831A831VgCtgTt2222B.1.1600.000686
S831A831VgCtgTt2222P.10.000347
S831A831SGctTct1919AY.430.000084
S831A831VgCtgTt1818AY.30.000179
S831A831VgCtgTt1818AY.75.10.003246
S831A831VgCtgTt1818B.1.20.000158
S831A831VgCtgTt1717AY.260.000481
S831A831TGctAct1717B.1.1770.000224
S831A831VgCtgTt1717B.1.4270.000858
S831A831DgCtgAt1616All0.000003
S831A831TGctAct1616AY.440.000097
S831A831VgCtgTt1515AY.440.000091
S831A831VgCtgTt1313AY.1020.000345
S831A831AgcTgcC1313AY.710.006176
S831A831delGCT---1313B.1.1.70.000012
S831A831VgCtgTt1313B.1.1770.000171
S831A831SGctTct1212B.1.1600.000374
S831A831AgcTgcC1112B.1.5260.000259
S831A831AgcTgcG112B.1.5260.000024
S831A831VgCtgTt1111AY.1140.002542
S831A831VgCtgTt1111AY.200.000428
S831A831VgCtgTt1111AY.390.000272
S831A831AgcTgcC611B.1.20.000053
S831A831AgcTgcA511B.1.20.000044
S831A831AgcTgcA1111C.370.001277
S831A831VgCtgTt1010AY.230.000697
S831A831AgcTgcC710AY.430.000031
S831A831AgcTgcA310AY.430.000013
S831A831SGctTct1010AY.5.30.003374
S831A831VgCtgTt1010B.10.000092
S831A831VgCtgTt99B.1.3510.000268
S831A831VgCtgTt88AY.350.001864
S831A831VgCtgTt88AY.9.20.000294
S831A831VgCtgTt88B.1.10.000145
S831A831TGctAct88B.1.617.20.00003
S831A831SGctTct77A.2.20.011824
S831A831VgCtgTt77AY.160.002658
S831A831VgCtgTt77AY.420.000282
S831A831TGctAct77B.1.1.70.000006
S831A831VgCtgTt77B.1.4290.000165
S831A831SGctTct77B.1.5260.000165
S831A831VgCtgTt66AY.290.000095
S831A831AgcTgcA56B.1.1.2160.004452
S831A831AgcTgcC16B.1.1.2160.00089
S831A831VgCtgTt66B.1.177.70.000989
S831A831AgcTgcC66B.1.3510.000178
S831A831VgCtgTt66R.10.00054
S831A831SGctTct55AY.1030.000031
S831A831AgcTgcC55AY.1210.000677
S831A831SGctTct55AY.390.000124
S831A831TGctAct55AY.4.20.000108
S831A831delGCT---55AY.430.000022
S831A831TGctAct55AY.430.000022
S831A831SGctTct55AY.46.60.000361
S831A831SGctTct55AY.710.002375
S831A831VgCtgTt45AY.750.000224
S831A831VgCTgTC15AY.750.000056
S831A831AgcTgcC45B.10.000037
S831A831AgcTgcA15B.10.000009
S831A831VgCtgTt55B.1.1.1760.002197
S831A831VgCtgTt55B.1.2430.000348
S831A831VgCtgTt55B.1.6370.000365
S831A831VgCtgTt55B.380.119048
S831A831AgcTgcC45D.20.0003
S831A831AgcTgcG15D.20.000075
S831A831VgCtgTt44A.2.50.001996
S831A831GgCtgGt44All0.000001
S831A831AgcTgcC24AY.1020.000053
S831A831AgcTgcA14AY.1020.000027
S831A831AgcTgcG14AY.1020.000027
S831A831AgcTgcC44AY.1030.000025
S831A831VgCtgTt44AY.1160.001147
S831A831SGctTct44AY.250.000024
S831A831AgcTgcC44AY.390.000099
S831A831VgCtgTt44AY.4.20.000087
S831A831VgCtgTt44AY.46.60.000289
S831A831SGctTct44AY.470.000124
S831A831AgcTgcC34AY.470.000093
S831A831AgcTgcA14AY.470.000031
S831A831VgCtgTt44AY.50.000083
S831A831VgCtgTt44AY.5.40.001107
S831A831VgCtgTt44AY.90.00027
S831A831AgcTgcC44AY.980.000316
S831A831VgCtgTt34AY.98.10.000145
S831A831VgCTgTC14AY.98.10.000048
S831A831VgCtgTt44AY.99.20.000369
S831A831VgCtgTt44B.1.1.440.009639
S831A831VgCtgTt44B.1.1.5190.000159
S831A831DgCtgAt44B.1.1.70.000004
S831A831VgCtgTt44B.1.160.70.008316
S831A831VgCtgTt44D.20.0003
S831A831AgcTgcC34P.10.000047
S831A831AgcTgcA14P.10.000016
S831A831PGctCct33All0.000001
S831A831VgCtgTt33AY.1190.000106
S831A831AgcTgcC23AY.230.000139
S831A831AgcTgcG13AY.230.00007
S831A831SGctTct33AY.330.0002
S831A831VgCtgTt33AY.330.0002
S831A831delGCT---33AY.4.50.000322
S831A831VgCtgTt33AY.450.000365
S831A831VgCtgTt33AY.460.000312
S831A831SGctTct33AY.610.000314
S831A831VgCtgTt33AY.620.001307
S831A831VgCtgTt33AY.7.10.000338
S831A831AgcTgcC23AY.98.10.000097
S831A831AgcTgcG13AY.98.10.000048
S831A831SGctTct33B.10.000027
S831A831VgCtgTt33B.1.351.30.002629
S831A831SGctTct33B.1.36.290.001552
S831A831VgCtgTt33B.1.36.290.001552
S831A831AgcTgcC33B.1.5230.007353
S831A831TGctAct33B.1.6210.000266
S831A831delGCT---33B.1.6210.000266
S831A831delGCT---33P.10.000047
S831A831delGCT---33P.1.150.000697
S831A831VgCtgTt33Q.10.000379
S831A831VgCtgTt33Z.10.008671
S831A831delGCT---220.111111
S831A831VgCtgTt120.055556
S831A831VgCTgTG120.055556
S831A831del1Gct-ct22All0
S831A831del2gCTg--22All0
S831A831IGCtATt12All0
S831A831IGCTATC12All0
S831A831SGctTct22AY.1000.000092
S831A831TGctAct22AY.1020.000053
S831A831TGctAct22AY.1030.000012
S831A831VgCtgTt22AY.1130.000285
S831A831SGctTct22AY.1210.000271
S831A831VgCtgTt22AY.16.10.00094
S831A831VgCtgTt22AY.20.000712
S831A831AgcTgcG12AY.250.000006
S831A831AgcTgcC12AY.250.000006
S831A831VgCtgTt22AY.270.000129
S831A831VgCtgTt22AY.360.000296
S831A831DgCtgAt22AY.40.000003
S831A831TGctAct22AY.40.000003
S831A831delGCT---22AY.40.000003
S831A831TGctAct22AY.420.00008
S831A831GgCtgGt22AY.430.000009
S831A831VgCtgTt22AY.470.000062
S831A831SGctTct22AY.50.000041
S831A831AgcTgcC22AY.50.000041
S831A831VgCtgTt22AY.550.001835
S831A831VgCtgTt22AY.60.000082
S831A831AgcTgcC22AY.730.001331
S831A831VgCtgTt22AY.980.000158
S831A831TGctAct12AY.98.10.000048
S831A831TGcTAcC12AY.98.10.000048
S831A831IGCTATC12AY.98.10.000048
S831A831IGCtATt12AY.98.10.000048
S831A831delGCT---22B.10.000018
S831A831AgcTgcC22B.1.10.000036
S831A831delGCT---22B.1.1.2360.013793
S831A831AgcTgcA22B.1.1.2610.017241
S831A831VgCtgTt22B.1.1.3180.000604
S831A831AgcTgcC22B.1.177.150.001262
S831A831VgCtgTt22B.1.177.450.000762
S831A831delGCT---22B.1.177.630.005405
S831A831VgCtgTt22B.1.2340.000264
S831A831AgcTgcC22B.1.360.000292
S831A831AgcTgcA12B.1.4290.000024
S831A831AgcTgcC12B.1.4290.000024
S831A831VgCtgTt22B.1.466.20.000782
S831A831SGctTct22B.1.5090.001732
S831A831SGctTct22B.1.5250.000226
S831A831SGctTct22B.1.617.10.000258
S831A831delGCT---22B.1.617.20.000008
S831A831DgCtgAt22B.1.617.20.000008
S831A831VgCtgTt22B.260.029412
S831A831VgCtgTt22P.1.150.000465
S831A831SGctTct22Q.80.00033
S831A831AgcTgcG110.055556
S831A831VgCtgTt11A0.000387
S831A831delGCT---11A0.000387
S831A831VgCtgTt11A.2.5.20.001572
S831A831AgcTgcG11A.250.018182
S831A831FGCtTTt11All0
S831A831VgCtgTt11AY.10.000396
S831A831VgCtgTt11AY.1000.000046
S831A831del1Gct-ct11AY.1030.000006
S831A831VgCtgTt11AY.1100.000113
S831A831VgCtgTt11AY.1170.000085
S831A831AgcTgcC11AY.1170.000085
S831A831AgcTgcC11AY.1180.000063
S831A831VgCtgTt11AY.1180.000063
S831A831delGCT---11AY.1190.000035
S831A831AgcTgcC11AY.1190.000035
S831A831SGctTct11AY.120.000316
S831A831TGctAct11AY.1200.000037
S831A831delGCT---11AY.1200.000037
S831A831DgCtgAt11AY.1200.000037
S831A831VgCtgTt11AY.1200.000037
S831A831VgCtgTt11AY.1210.000135
S831A831VgCtgTt11AY.140.000088
S831A831AgcTgcC11AY.140.000088
S831A831AgcTgcC11AY.200.000039
S831A831DgCtgAt11AY.250.000006
S831A831delGCT---11AY.250.000006
S831A831AgcTgcA11AY.260.000028
S831A831FGCtTTt11AY.260.000028
S831A831delGCT---11AY.290.000016
S831A831TGctAct11AY.290.000016
S831A831TGctAct11AY.30.00001
S831A831AgcTgcC11AY.30.00001
S831A831TGctAct11AY.330.000067
S831A831AgcTgcC11AY.340.000097
S831A831VgCtgTt11AY.340.000097
S831A831VgCtgTt11AY.34.10.00051
S831A831SGctTct11AY.360.000148
S831A831VgCtgTt11AY.39.10.00004
S831A831AgcTgcA11AY.39.10.00004
S831A831DgCtgAt11AY.39.10.00004
S831A831SGctTct11AY.39.10.00004
S831A831SGctTct11AY.4.20.000022
S831A831TGctAct11AY.450.000122
S831A831SGctTct11AY.450.000122
S831A831SGctTct11AY.460.000104
S831A831delGCT---11AY.46.20.000635
S831A831SGctTct11AY.46.30.000934
S831A831VgCtgTt11AY.46.40.000165
S831A831TGctAct11AY.46.50.000198
S831A831SGctTct11AY.5.40.000277
S831A831VgCtgTt11AY.520.000814
S831A831AgcTgcC11AY.550.000917
S831A831GgCtgGt11AY.550.000917
S831A831SGctTct11AY.550.000917
S831A831VgCtgTt11AY.590.00053
S831A831DgCtgAt11AY.610.000105
S831A831SGctTct11AY.670.000464
S831A831VgCtgTt11AY.670.000464
S831A831VgCtgTt11AY.680.000274
S831A831AgcTgcA11AY.700.000209
S831A831VgCtgTt11AY.700.000209
S831A831AgcTgcG11AY.750.000056
S831A831SGctTct11AY.75.10.00018
S831A831SGctTct11AY.780.001541
S831A831TGctAct11AY.840.000437
S831A831TGctAct11AY.850.000427
S831A831VgCtgTt11AY.870.000833
S831A831SGctTct11AY.870.000833
S831A831VgCtgTt11AY.9.10.000084
S831A831SGctTct11AY.9.20.000037
S831A831delGCT---11AY.9.20.000037
S831A831SGctTct11AY.980.000079
S831A831SGctTct11AY.98.10.000048
S831A831SGctTct11B0.000128
S831A831DgCtgAt11B.10.000009
S831A831del2gCTg--11B.1.10.000018
S831A831DgCtgAt11B.1.10.000018
S831A831delGCT---11B.1.10.000018
S831A831VgCtgTt11B.1.1.10.000327
S831A831SGctTct11B.1.1.1350.004695
S831A831DgCtgAt11B.1.1.1940.00495
S831A831AgcTgcC11B.1.1.2130.021739
S831A831VgCtgTt11B.1.1.2320.001815
S831A831SGctTct11B.1.1.250.000569
S831A831VgCtgTt11B.1.1.2530.002506
S831A831AgcTgcC11B.1.1.3060.000438
S831A831VgCtgTt11B.1.1.3120.001912
S831A831VgCtgTt11B.1.1.3170.000412
S831A831VgCtgTt11B.1.1.330.000421
S831A831SGctTct11B.1.1.3750.011905
S831A831PGctCct11B.1.1.3760.005952
S831A831VgCtgTt11B.1.1.40.002976
S831A831delGCT---11B.1.1.4090.002833
S831A831AgcTgcC11B.1.1.4130.006897
S831A831AgcTgcC11B.1.1.500.000679
S831A831AgcTgcG11B.1.1.5190.00004
S831A831VgCtgTt11B.1.1.830.00271
S831A831AgcTgcA11B.1.1600.000031
S831A831VgCtgTt11B.1.160.160.000929
S831A831VgCtgTt11B.1.1640.014925
S831A831SGctTct11B.1.1770.000013
S831A831delGCT---11B.1.1770.000013
S831A831AgcTgcC11B.1.1770.000013
S831A831VgCtgTt11B.1.177.160.000664
S831A831delGCT---11B.1.177.170.000821
S831A831TGctAct11B.1.177.440.000519
S831A831AgcTgcA11B.1.177.70.000165
S831A831VgCtgTt11B.1.177.730.000566
S831A831SGctTct11B.1.177.810.000189
S831A831TGctAct11B.1.1900.01
S831A831VgCtgTt11B.1.1920.009259
S831A831PGctCct11B.1.20.000009
S831A831delGCT---11B.1.20.000009
S831A831AgcTgcC11B.1.2140.003663
S831A831VgCtgTt11B.1.214.20.0006
S831A831AgcTgcC11B.1.214.20.0006
S831A831AgcTgcC11B.1.2320.000537
S831A831VgCtgTt11B.1.2580.000067
S831A831delGCT---11B.1.2580.000067
S831A831VgCtgTt11B.1.258.170.000104
S831A831AgcTgcC11B.1.2790.000514
S831A831SGctTct11B.1.3110.000275
S831A831AgcTgcC11B.1.3360.002439
S831A831VgCtgTt11B.1.3490.000715
S831A831SGctTct11B.1.3510.00003
S831A831DgCtgAt11B.1.3510.00003
S831A831VgCtgTt11B.1.360.000146
S831A831SGctTct11B.1.36.220.001208
S831A831VgCtgTt11B.1.36.360.000602
S831A831SGctTct11B.1.36.380.001642
S831A831AgcTgcC11B.1.3690.000285
S831A831AgcTgcA11B.1.3960.000706
S831A831VgCtgTt11B.1.4000.000429
S831A831SGctTct11B.1.4270.00005
S831A831PGctCct11B.1.4290.000024
S831A831AgcTgcC11B.1.466.20.000391
S831A831VgCtgTt11B.1.5170.000427
S831A831VgCtgTt11B.1.5300.007143
S831A831VgCtgTt11B.1.5600.00463
S831A831VgCtgTt11B.1.5610.000397
S831A831AgcTgcC11B.1.5640.000426
S831A831TGctAct11B.1.5770.000687
S831A831AgcTgcA11B.1.5960.000087
S831A831SGctTct11B.1.5970.00463
S831A831SGctTct11B.1.6090.000479
S831A831AgcTgcC11B.1.617.10.000129
S831A831GgCtgGt11B.1.617.20.000004
S831A831del1Gct-ct11B.1.617.20.000004
S831A831TGctAct11B.1.6370.000073
S831A831delGCT---11B.1.6380.052632
S831A831VgCtgTt11B.1.760.011364
S831A831VgCtgTt11B.150.017544
S831A831VgCtgTt11B.60.00091
S831A831SGctTct11B.60.00091
S831A831AgcTgcA11B.6.60.000889
S831A831AgcTgcA11C.36.10.004149
S831A831VgCtgTt11C.36.30.000567
S831A831delGCT---11C.370.000116
S831A831AgcTgcC11N.50.001767
S831A831delGCT---11P.1.130.000898
S831A831VgCtgTt11P.1.170.000162
S831A831del2gCTg--11Q.20.000613
S831A831AgcTgcC11Q.40.000455
S831A831VgCtgTt11W.30.005263