CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : CodonNum = 816

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S816S816SsyntcAtcG11779890.84027224008-24010
S816S816SsyntcAtcT11771420.12064624008-24010
S816S816SsyntcAtcC1177460.039082424008-24010
S816S816deldelTCA---8282124008-24010
S816S816XnonsyntCatAa73720.98630124008-24010
S816S816XnonsyntCatGa7310.013698624008-24010
S816S816PnonsynTcaCca1212124008-24010
S816S816LnonsyntCatTa980.88888924008-24010
S816S816del1delTca-ca970.77777824008-24010
S816S816del1deltCat-a920.22222224008-24010
S816S816LnonsyntCAtTG910.11111124008-24010
S816S816del2delTCa--a44124008-24010
S816S816RnonsynTCaCGa33124008-24010
S816S816TnonsynTcaAca33124008-24010
S816S816FnonsyntCAtTT22124008-24010
S816S816AnonsynTcaGca22124008-24010
S816S816VnonsynTCAGTT11124008-24010
S816S816KnonsynTCaAAa11124008-24010
S816S816HnonsynTCACAC11124008-24010

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S816S816StcAtcG9891177All0.000189
S816S816StcAtcT1421177All0.000027
S816S816StcAtcC461177All0.000009
S816S816StcAtcG219230B.1.1.70.000196
S816S816StcAtcT9230B.1.1.70.000008
S816S816StcAtcC2230B.1.1.70.000002
S816S816StcAtcG191191B.1.6120.506631
S816S816StcAtcG156171AY.40.000243
S816S816StcAtcT15171AY.40.000023
S816S816delTCA---8282All0.000016
S816S816XtCatAa7273All0.000014
S816S816XtCatGa173All0
S816S816StcAtcG4549B.1.617.20.000169
S816S816StcAtcT349B.1.617.20.000011
S816S816StcAtcC149B.1.617.20.000004
S816S816StcAtcG3940AY.440.000237
S816S816StcAtcT140AY.440.000006
S816S816StcAtcT2839AY.430.000124
S816S816StcAtcG1139AY.430.000049
S816S816StcAtcG3638AY.330.002404
S816S816StcAtcT238AY.330.000134
S816S816StcAtcG3535AY.5.30.011808
S816S816StcAtcC3333B.1.1.1760.014499
S816S816XtCatAa2727AY.40.000042
S816S816StcAtcG1524AY.250.00009
S816S816StcAtcT724AY.250.000042
S816S816StcAtcC224AY.250.000012
S816S816StcAtcG2123P.10.000331
S816S816StcAtcT223P.10.000032
S816S816StcAtcG2121AY.1140.004853
S816S816StcAtcG1718AY.1020.000451
S816S816StcAtcT118AY.1020.000027
S816S816XtCatAa1717AY.4.50.001827
S816S816StcAtcG1316B.1.2210.000923
S816S816StcAtcT316B.1.2210.000213
S816S816delTCA---1313B.1.1.70.000012
S816S816PTcaCca1212All0.000002
S816S816StcAtcT1212B.1.4290.000282
S816S816StcAtcG811B.1.10.000145
S816S816StcAtcT311B.1.10.000054
S816S816LtCatTa89All0.000002
S816S816del1Tca-ca79All0.000001
S816S816del1tCat-a29All0
S816S816LtCAtTG19All0
S816S816StcAtcT89AY.130.001288
S816S816StcAtcG19AY.130.000161
S816S816StcAtcG59AY.290.000079
S816S816StcAtcT49AY.290.000063
S816S816StcAtcG99B.1.3960.006351
S816S816StcAtcT68AY.4.20.00013
S816S816StcAtcG18AY.4.20.000022
S816S816StcAtcC18AY.4.20.000022
S816S816StcAtcG88AY.990.008395
S816S816StcAtcG88B.1.258.170.000832
S816S816StcAtcG57B.1.1770.000066
S816S816StcAtcC27B.1.1770.000026
S816S816delTCA---77B.1.6210.00062
S816S816StcAtcT46AY.1030.000025
S816S816StcAtcG16AY.1030.000006
S816S816StcAtcC16AY.1030.000006
S816S816StcAtcG66AY.200.000233
S816S816StcAtcT36AY.30.00003
S816S816StcAtcG36AY.30.00003
S816S816delTCA---66AY.430.000027
S816S816StcAtcG66B.1.2430.000418
S816S816StcAtcT66B.1.5950.001566
S816S816StcAtcG45AY.1130.00057
S816S816StcAtcT15AY.1130.000142
S816S816StcAtcG55AY.1190.000177
S816S816StcAtcG55AY.390.000124
S816S816XtCatAa55AY.90.000338
S816S816delTCA---55B.10.000046
S816S816StcAtcG45B.10.000037
S816S816StcAtcT15B.10.000009
S816S816delTCA---55P.10.000079
S816S816delTCA---55P.1.150.001162
S816S816del2TCa--a44All0.000001
S816S816StcAtcG44AY.39.10.000158
S816S816delTCA---44AY.4.50.00043
S816S816StcAtcG44AY.460.000416
S816S816StcAtcT44AY.480.00186
S816S816StcAtcG44AY.98.10.000194
S816S816XtCatAa44B.10.000037
S816S816StcAtcT44B.1.1.700.001364
S816S816StcAtcT24B.1.20.000018
S816S816StcAtcG24B.1.20.000018
S816S816StcAtcG44B.1.360.000584
S816S816TTcaAca33All0.000001
S816S816RTCaCGa33All0.000001
S816S816StcAtcG33AY.3.10.000256
S816S816XtCatAa33AY.430.000013
S816S816LtCatTa33AY.430.000013
S816S816XtCatAa33AY.80.001818
S816S816RTCaCGa33B.10.000027
S816S816StcAtcC23B.1.1.5190.000079
S816S816StcAtcG13B.1.1.5190.00004
S816S816StcAtcG33B.1.2580.0002
S816S816StcAtcG33B.1.5260.000071
S816S816delTCA---33B.1.617.20.000011
S816S816PTcaCca220.111111
S816S816ATcaGca22All0
S816S816FtCAtTT22All0
S816S816StcAtcG22AU.20.004843
S816S816StcAtcG22AY.1060.00067
S816S816StcAtcG22AY.1090.001479
S816S816StcAtcG22AY.1160.000574
S816S816XtCatAa22AY.1200.000074
S816S816StcAtcG12AY.1200.000037
S816S816StcAtcT12AY.1200.000037
S816S816StcAtcG12AY.1210.000135
S816S816StcAtcT12AY.1210.000135
S816S816StcAtcG22AY.20.000712
S816S816StcAtcG12AY.230.00007
S816S816StcAtcT12AY.230.00007
S816S816delTCA---22AY.250.000012
S816S816StcAtcG22AY.320.001065
S816S816delTCA---22AY.40.000003
S816S816del1Tca-ca12AY.430.000004
S816S816del1tCat-a12AY.430.000004
S816S816StcAtcG22AY.60.000082
S816S816StcAtcG22AY.670.000929
S816S816delTCA---22B.1.1.2360.013793
S816S816StcAtcG22B.1.1.3110.000716
S816S816StcAtcG22B.1.1.330.000842
S816S816del1Tca-ca22B.1.1.70.000002
S816S816StcAtcG22B.1.177.210.000153
S816S816StcAtcG22B.1.177.440.001038
S816S816delTCA---22B.1.177.630.005405
S816S816StcAtcG22B.1.258.110.000793
S816S816StcAtcG22B.1.3510.000059
S816S816StcAtcG22B.1.5820.000981
S816S816del1Tca-ca22B.1.617.20.000008
S816S816PTcaCca22D.20.00015
S816S816StcAtcT22P.1.140.000096
S816S816XtCatGa110.055556
S816S816LtCatTa110.055556
S816S816delTCA---11A0.000387
S816S816XtCatAa11A0.000387
S816S816StcAtcT11A.2.5.10.004808
S816S816HTCACAC11All0
S816S816KTCaAAa11All0
S816S816VTCAGTT11All0
S816S816delTCA---11AY.100.00053
S816S816StcAtcG11AY.1000.000046
S816S816PTcaCca11AY.1030.000006
S816S816StcAtcG11AY.1080.001103
S816S816del1tCat-a11AY.1170.000085
S816S816delTCA---11AY.1200.000037
S816S816StcAtcG11AY.160.00038
S816S816XtCatAa11AY.170.008197
S816S816KTCaAAa11AY.230.00007
S816S816delTCA---11AY.240.000431
S816S816ATcaGca11AY.30.00001
S816S816StcAtcG11AY.350.000233
S816S816PTcaCca11AY.40.000002
S816S816StcAtcT11AY.420.00004
S816S816PTcaCca11AY.430.000004
S816S816FtCAtTT11AY.430.000004
S816S816delTCA---11AY.440.000006
S816S816del2TCa--a11AY.440.000006
S816S816PTcaCca11AY.440.000006
S816S816StcAtcG11AY.450.000122
S816S816delTCA---11AY.46.20.000635
S816S816StcAtcG11AY.46.60.000072
S816S816StcAtcG11AY.470.000031
S816S816StcAtcG11AY.50.000021
S816S816XtCatAa11AY.520.000814
S816S816StcAtcT11AY.530.000288
S816S816delTCA---11AY.680.000274
S816S816StcAtcG11AY.680.000274
S816S816TTcaAca11AY.690.000187
S816S816TTcaAca11AY.710.000475
S816S816StcAtcG11AY.740.000116
S816S816StcAtcG11AY.750.000056
S816S816delTCA---11AY.750.000056
S816S816LtCAtTG11AY.750.000056
S816S816del1Tca-ca11AY.750.000056
S816S816XtCatAa11AY.870.000833
S816S816StcAtcG11AY.9.20.000037
S816S816StcAtcT11AY.930.000273
S816S816delTCA---11AY.98.10.000048
S816S816XtCatAa11B0.000128
S816S816LtCatTa11B.10.000009
S816S816del2TCa--a11B.10.000009
S816S816delTCA---11B.1.10.000018
S816S816PTcaCca11B.1.10.000018
S816S816delTCA---11B.1.1.1390.022727
S816S816TTcaAca11B.1.1.1740.003378
S816S816StcAtcG11B.1.1.2070.001182
S816S816LtCatTa11B.1.1.2160.00089
S816S816delTCA---11B.1.1.2910.000742
S816S816StcAtcG11B.1.1.3060.000438
S816S816PTcaCca11B.1.1.3060.000438
S816S816delTCA---11B.1.1.3150.008475
S816S816del2TCa--a11B.1.1.3720.000689
S816S816delTCA---11B.1.1.4090.002833
S816S816StcAtcG11B.1.1.5260.003546
S816S816VTCAGTT11B.1.1.70.000001
S816S816del2TCa--a11B.1.1.70.000001
S816S816XtCatAa11B.1.1.70.000001
S816S816PTcaCca11B.1.1.70.000001
S816S816HTCACAC11B.1.1.70.000001
S816S816StcAtcG11B.1.1110.001175
S816S816delTCA---11B.1.1600.000031
S816S816delTCA---11B.1.1770.000013
S816S816delTCA---11B.1.177.170.000821
S816S816delTCA---11B.1.177.510.004566
S816S816StcAtcG11B.1.177.560.000668
S816S816XtCatAa11B.1.20.000009
S816S816delTCA---11B.1.20.000009
S816S816StcAtcC11B.1.214.20.0006
S816S816StcAtcC11B.1.220.001318
S816S816LtCatTa11B.1.2390.001221
S816S816delTCA---11B.1.2580.000067
S816S816XtCatAa11B.1.3010.005917
S816S816delTCA---11B.1.3510.00003
S816S816StcAtcG11B.1.351.20.000303
S816S816StcAtcG11B.1.36.100.004785
S816S816ATcaGca11B.1.36.290.000517
S816S816StcAtcT11B.1.36.390.002217
S816S816StcAtcG11B.1.466.20.000391
S816S816StcAtcT11B.1.4990.00105
S816S816StcAtcG11B.1.5090.000866
S816S816XtCatAa11B.1.5260.000024
S816S816StcAtcG11B.1.5580.004566
S816S816delTCA---11B.1.5610.000397
S816S816StcAtcG11B.1.5760.000907
S816S816StcAtcT11B.1.5960.000087
S816S816XtCatAa11B.1.5990.00365
S816S816FtCAtTT11B.1.617.10.000129
S816S816PTcaCca11B.1.617.10.000129
S816S816LtCatTa11B.1.617.10.000129
S816S816StcAtcG11B.1.621.10.000506
S816S816XtCatAa11B.1.6230.000536
S816S816delTCA---11B.1.6380.052632
S816S816StcAtcG11B.400.000364
S816S816StcAtcG11C.350.000774
S816S816delTCA---11C.370.000116
S816S816StcAtcG11P.1.10.000318
S816S816delTCA---11P.1.130.000898
S816S816StcAtcT11P.1.150.000232
S816S816StcAtcG11P.1.170.000162
S816S816delTCA---11P.1.70.000319
S816S816StcAtcG11P.20.000187
S816S816del1Tca-ca11Q.80.000165
S816S816StcAtcG11R.10.00009